RNA–Protein interactions for RNA: ENST00000491383.5

KDM3A-214, Transcript of lysine demethylase 3A, humanhuman

TSL 1 (best)

Gene KDM3A, Length 4,485 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
KDM3A-214ENST00000491383 NISCHQ9Y2I1 1504 aa10.21□□□□□ -0.78
KDM3A-214ENST00000491383 CCDC180Q9P1Z9 1646 aa9□□□□□ -0.97
KDM3A-214ENST00000491383 ZCCHC6Q5VYS8 1495 aaKnown RBP8.55□□□□□ -1.04
KDM3A-214ENST00000491383 ABCC9O60706 1549 aa8.54□□□□□ -1.04
KDM3A-214ENST00000491383 PELP1Q8IZL8 1130 aaKnown RBP8.54□□□□□ -1.04
KDM3A-214ENST00000491383 DCAF8L2P0C7V8 631 aa8.48□□□□□ -1.05
KDM3A-214ENST00000491383 DCAF1Q9Y4B6 1507 aa8.48□□□□□ -1.05
KDM3A-214ENST00000491383 MYO15BQ96JP2 1530 aa8.42□□□□□ -1.06
KDM3A-214ENST00000491383 MYT1Q01538 1121 aa8.41□□□□□ -1.06
KDM3A-214ENST00000491383 SLC24A1O60721 1099 aa8.41□□□□□ -1.06
KDM3A-214ENST00000491383 NACADO15069 1562 aa8.4□□□□□ -1.06
KDM3A-214ENST00000491383 RB1CC1Q8TDY2 1594 aa8.36□□□□□ -1.07
KDM3A-214ENST00000491383 SUPT5HO00267 1087 aaKnown RBP8.29□□□□□ -1.08
KDM3A-214ENST00000491383 PCGF6Q9BYE7 350 aa8.25□□□□□ -1.09
KDM3A-214ENST00000491383 SHROOM4Q9ULL8 1493 aa8.22□□□□□ -1.09
KDM3A-214ENST00000491383 SCRIBQ14160 1630 aa8.21□□□□□ -1.1
KDM3A-214ENST00000491383 HRCP23327 699 aa8.17□□□□□ -1.1
KDM3A-214ENST00000491383 CENPBP07199 599 aaPredicted RBP8.12□□□□□ -1.11
KDM3A-214ENST00000491383 PRKCSHP14314 528 aaPredicted RBP8.11□□□□□ -1.11
KDM3A-214ENST00000491383 ZEB1P37275 1124 aaPredicted RBP8.11□□□□□ -1.11
KDM3A-214ENST00000491383 UNC13AQ9UPW8 1703 aa8.1□□□□□ -1.11
KDM3A-214ENST00000491383 BICRAQ9NZM4 1560 aa8.02□□□□□ -1.12
KDM3A-214ENST00000491383 PABPN1Q86U42 306 aaKnown RBP eCLIP8.02□□□□□ -1.13
KDM3A-214ENST00000491383 PPARGC1BQ86YN6 1023 aaKnown RBP7.95□□□□□ -1.14
KDM3A-214ENST00000491383 BAZ1AQ9NRL2 1556 aaPredicted RBP7.92□□□□□ -1.14
KDM3A-214ENST00000491383 CECR2Q9BXF3 1484 aa7.89□□□□□ -1.15
KDM3A-214ENST00000491383 EHMT2Q96KQ7 1210 aa7.89□□□□□ -1.15
KDM3A-214ENST00000491383 TRIM26Q12899 539 aaPredicted RBP7.88□□□□□ -1.15
KDM3A-214ENST00000491383 SMARCA4P51532 1647 aa7.87□□□□□ -1.15
KDM3A-214ENST00000491383 APLP2Q06481 763 aa7.87□□□□□ -1.15
KDM3A-214ENST00000491383 ERICH6Q7L0X2 663 aa7.87□□□□□ -1.15
KDM3A-214ENST00000491383 CCER1Q8TC90 406 aaPredicted RBP7.86□□□□□ -1.15
KDM3A-214ENST00000491383 RSF1Q96T23 1441 aaPredicted RBP7.86□□□□□ -1.15
KDM3A-214ENST00000491383 MROH2BQ7Z745 1585 aa7.85□□□□□ -1.15
KDM3A-214ENST00000491383 TTBK1Q5TCY1 1321 aaPredicted RBP7.83□□□□□ -1.16
KDM3A-214ENST00000491383 YTHDC1Q96MU7 727 aaKnown RBP7.83□□□□□ -1.16
KDM3A-214ENST00000491383 EIF4G1Q04637 1599 aaKnown RBP7.83□□□□□ -1.16
KDM3A-214ENST00000491383 SMARCA2P51531 1590 aa7.81□□□□□ -1.16
KDM3A-214ENST00000491383 DAXXQ9UER7 740 aaPredicted RBP7.79□□□□□ -1.16
KDM3A-214ENST00000491383 WIZO95785 1651 aa7.78□□□□□ -1.16
KDM3A-214ENST00000491383 PEG3Q9GZU2 1588 aa7.78□□□□□ -1.16
KDM3A-214ENST00000491383 FAM9AQ8IZU1 332 aaPredicted RBP7.77□□□□□ -1.17
KDM3A-214ENST00000491383 ATAD2BQ9ULI0 1458 aa7.76□□□□□ -1.17
KDM3A-214ENST00000491383 TOP2AP11388 1531 aaKnown RBP7.75□□□□□ -1.17
KDM3A-214ENST00000491383 BAZ1BQ9UIG0 1483 aaKnown RBP7.75□□□□□ -1.17
KDM3A-214ENST00000491383 GTF3C3Q9Y5Q9 886 aa7.74□□□□□ -1.17
KDM3A-214ENST00000491383 CC2D2AQ9P2K1 1620 aa7.73□□□□□ -1.17
KDM3A-214ENST00000491383 NCAPD3P42695 1498 aa7.73□□□□□ -1.17
KDM3A-214ENST00000491383 HMGXB3Q12766 1538 aa7.73□□□□□ -1.17
KDM3A-214ENST00000491383 NEFLP07196 543 aa7.7□□□□□ -1.18
KDM3A-214ENST00000491383 CHIC1Q5VXU3 224 aa7.7□□□□□ -1.18
KDM3A-214ENST00000491383 ACIN1Q9UKV3 1341 aaKnown RBP7.7□□□□□ -1.18
KDM3A-214ENST00000491383 DIEXFQ68CQ4 756 aaKnown RBP7.68□□□□□ -1.18
KDM3A-214ENST00000491383 LOC105371045A0A1W2PR82 267 aa7.66□□□□□ -1.18
KDM3A-214ENST00000491383 TRIM41Q8WV44 630 aa7.66□□□□□ -1.18
KDM3A-214ENST00000491383 SCAF1Q9H7N4 1312 aaKnown RBP7.65□□□□□ -1.18
KDM3A-214ENST00000491383 CCDC88BA6NC98 1476 aa7.63□□□□□ -1.19
KDM3A-214ENST00000491383 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP7.56□□□□□ -1.2
KDM3A-214ENST00000491383 DNAJC5BQ9UF47 199 aa7.55□□□□□ -1.2
KDM3A-214ENST00000491383 NEUROD1Q13562 356 aa7.54□□□□□ -1.2
KDM3A-214ENST00000491383 PLPPR3Q6T4P5 718 aa7.53□□□□□ -1.2
KDM3A-214ENST00000491383 CADPSQ9ULU8 1353 aa7.53□□□□□ -1.2
KDM3A-214ENST00000491383 CFTRP13569 1480 aa7.52□□□□□ -1.21
KDM3A-214ENST00000491383 LAMC3Q9Y6N6 1575 aa7.51□□□□□ -1.21
KDM3A-214ENST00000491383 PRDM2Q13029 1718 aa7.5□□□□□ -1.21
KDM3A-214ENST00000491383 BCL11AQ9H165 835 aa7.5□□□□□ -1.21
KDM3A-214ENST00000491383 PDS5BQ9NTI5 1447 aa7.47□□□□□ -1.21
KDM3A-214ENST00000491383 RTL5Q5HYW3 569 aaPredicted RBP7.46□□□□□ -1.21
KDM3A-214ENST00000491383 ZNF316A6NFI3 1004 aaPredicted RBP7.46□□□□□ -1.22
KDM3A-214ENST00000491383 UBTFP17480 764 aaKnown RBP7.45□□□□□ -1.22
KDM3A-214ENST00000491383 PLEKHG5O94827 1062 aa7.45□□□□□ -1.22
KDM3A-214ENST00000491383 FANCD2Q9BXW9 1451 aa7.44□□□□□ -1.22
KDM3A-214ENST00000491383 WRNQ14191 1432 aaPredicted RBP eCLIP7.44□□□□□ -1.22
KDM3A-214ENST00000491383 NESP48681 1621 aa7.44□□□□□ -1.22
KDM3A-214ENST00000491383 EIF5BO60841 1220 aaKnown RBP7.43□□□□□ -1.22
KDM3A-214ENST00000491383 BCANQ96GW7 911 aa7.43□□□□□ -1.22
KDM3A-214ENST00000491383 CLSPNQ9HAW4 1339 aa7.43□□□□□ -1.22
KDM3A-214ENST00000491383 CEP164Q9UPV0 1460 aa7.43□□□□□ -1.22
KDM3A-214ENST00000491383 ABCC8Q09428 1581 aa7.42□□□□□ -1.22
KDM3A-214ENST00000491383 RTN4Q9NQC3 1192 aaKnown RBP7.4□□□□□ -1.22
KDM3A-214ENST00000491383 HNRNPUL2Q1KMD3 747 aaKnown RBP7.4□□□□□ -1.22
KDM3A-214ENST00000491383 ERCC6Q03468 1493 aa7.4□□□□□ -1.23
KDM3A-214ENST00000491383 RANGAP1P46060 587 aaPredicted RBP7.39□□□□□ -1.23
KDM3A-214ENST00000491383 ANP32EQ9BTT0 268 aa7.39□□□□□ -1.23
KDM3A-214ENST00000491383 TOP2BQ02880 1626 aa7.38□□□□□ -1.23
KDM3A-214ENST00000491383 BIVM-ERCC5R4GMW8 1640 aa7.38□□□□□ -1.23
KDM3A-214ENST00000491383 NCBP3Q53F19 620 aaKnown RBP7.38□□□□□ -1.23
KDM3A-214ENST00000491383 KIF21AQ7Z4S6 1674 aa7.37□□□□□ -1.23
KDM3A-214ENST00000491383 CDK11AQ9UQ88 783 aaPredicted RBP7.37□□□□□ -1.23
KDM3A-214ENST00000491383 DNMBPQ6XZF7 1577 aa7.37□□□□□ -1.23
KDM3A-214ENST00000491383 SYNJ1O43426 1573 aa7.37□□□□□ -1.23
KDM3A-214ENST00000491383 MRC2Q9UBG0 1479 aa7.36□□□□□ -1.23
KDM3A-214ENST00000491383 MYT1LQ9UL68 1186 aa7.36□□□□□ -1.23
KDM3A-214ENST00000491383 CUX1P39880 1505 aa7.36□□□□□ -1.23
KDM3A-214ENST00000491383 TOPBP1Q92547 1522 aa7.34□□□□□ -1.23
KDM3A-214ENST00000491383 EEA1Q15075 1411 aa7.33□□□□□ -1.24
KDM3A-214ENST00000491383 URB2Q14146 1524 aaKnown RBP7.32□□□□□ -1.24
KDM3A-214ENST00000491383 FGD5Q6ZNL6 1462 aa7.31□□□□□ -1.24
KDM3A-214ENST00000491383 WDR62O43379 1518 aa7.31□□□□□ -1.24
KDM3A-214ENST00000491383 SOGA1O94964 1423 aa7.29□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 65.3 ms