RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 NISCHQ9Y2I1 1504 aa40.14■■■■■ 4.02
VIM-203ENST00000469543 SHROOM4Q9ULL8 1493 aa34.46■■■■□ 3.11
VIM-203ENST00000469543 CCDC180Q9P1Z9 1646 aa33.99■■■■□ 3.03
VIM-203ENST00000469543 ZCCHC6Q5VYS8 1495 aaKnown RBP33.85■■■■□ 3.01
VIM-203ENST00000469543 DCAF8L2P0C7V8 631 aa33.85■■■■□ 3.01
VIM-203ENST00000469543 SUPT5HO00267 1087 aaKnown RBP33.68■■■□□ 2.98
VIM-203ENST00000469543 DCAF1Q9Y4B6 1507 aa32.71■■■□□ 2.83
VIM-203ENST00000469543 CHIC1Q5VXU3 224 aa32.47■■■□□ 2.79
VIM-203ENST00000469543 MYO15BQ96JP2 1530 aa32.29■■■□□ 2.76
VIM-203ENST00000469543 SCRIBQ14160 1630 aa32.15■■■□□ 2.74
VIM-203ENST00000469543 ABCC9O60706 1549 aa32.14■■■□□ 2.74
VIM-203ENST00000469543 RSF1Q96T23 1441 aaPredicted RBP31.78■■■□□ 2.68
VIM-203ENST00000469543 LOC105371045A0A1W2PR82 267 aa31.71■■■□□ 2.67
VIM-203ENST00000469543 NACADO15069 1562 aa31.58■■■□□ 2.65
VIM-203ENST00000469543 CECR2Q9BXF3 1484 aa31.53■■■□□ 2.64
VIM-203ENST00000469543 RB1CC1Q8TDY2 1594 aa31.4■■■□□ 2.62
VIM-203ENST00000469543 PCGF6Q9BYE7 350 aa31.36■■■□□ 2.61
VIM-203ENST00000469543 MROH2BQ7Z745 1585 aa31.31■■■□□ 2.6
VIM-203ENST00000469543 TRIM41Q8WV44 630 aa31.25■■■□□ 2.59
VIM-203ENST00000469543 FAM9AQ8IZU1 332 aaPredicted RBP31.2■■■□□ 2.58
VIM-203ENST00000469543 WIZO95785 1651 aa31.12■■■□□ 2.57
VIM-203ENST00000469543 EHMT2Q96KQ7 1210 aa31.11■■■□□ 2.57
VIM-203ENST00000469543 HRCP23327 699 aa30.98■■■□□ 2.55
VIM-203ENST00000469543 PABPN1Q86U42 306 aaKnown RBP eCLIP30.87■■■□□ 2.53
VIM-203ENST00000469543 BAZ1AQ9NRL2 1556 aaPredicted RBP30.78■■■□□ 2.52
VIM-203ENST00000469543 UNC13AQ9UPW8 1703 aa30.76■■■□□ 2.51
VIM-203ENST00000469543 PPARGC1BQ86YN6 1023 aaKnown RBP30.69■■■□□ 2.5
VIM-203ENST00000469543 TRIM26Q12899 539 aaPredicted RBP30.6■■■□□ 2.49
VIM-203ENST00000469543 SMARCA4P51532 1647 aa30.58■■■□□ 2.49
VIM-203ENST00000469543 CCDC88BA6NC98 1476 aa30.5■■■□□ 2.47
VIM-203ENST00000469543 TOP2AP11388 1531 aaKnown RBP30.45■■■□□ 2.47
VIM-203ENST00000469543 BICRAQ9NZM4 1560 aa30.44■■■□□ 2.46
VIM-203ENST00000469543 ABCC8Q09428 1581 aa30.42■■■□□ 2.46
VIM-203ENST00000469543 EIF4G1Q04637 1599 aaKnown RBP30.4■■■□□ 2.46
VIM-203ENST00000469543 SMARCA2P51531 1590 aa30.36■■■□□ 2.45
VIM-203ENST00000469543 SOGA1O94964 1423 aa30.13■■■□□ 2.41
VIM-203ENST00000469543 RUSC2Q8N2Y8 1516 aa30.03■■■□□ 2.4
VIM-203ENST00000469543 TTBK1Q5TCY1 1321 aaPredicted RBP29.99■■■□□ 2.39
VIM-203ENST00000469543 ATAD2BQ9ULI0 1458 aa29.94■■■□□ 2.38
VIM-203ENST00000469543 PEG3Q9GZU2 1588 aa29.9■■■□□ 2.38
VIM-203ENST00000469543 CSRNP3Q8WYN3 585 aa29.88■■■□□ 2.37
VIM-203ENST00000469543 UBTFP17480 764 aaKnown RBP29.85■■■□□ 2.37
VIM-203ENST00000469543 BAZ1BQ9UIG0 1483 aaKnown RBP29.83■■■□□ 2.37
VIM-203ENST00000469543 WRNQ14191 1432 aaPredicted RBP eCLIP29.83■■■□□ 2.37
VIM-203ENST00000469543 CEP162Q5TB80 1403 aa29.75■■■□□ 2.35
VIM-203ENST00000469543 SYNJ1O43426 1573 aa29.69■■■□□ 2.34
VIM-203ENST00000469543 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP29.67■■■□□ 2.34
VIM-203ENST00000469543 TNIKQ9UKE5 1360 aa29.64■■■□□ 2.34
VIM-203ENST00000469543 ZEB1P37275 1124 aaPredicted RBP29.63■■■□□ 2.33
VIM-203ENST00000469543 EEA1Q15075 1411 aa29.57■■■□□ 2.32
VIM-203ENST00000469543 RANGAP1P46060 587 aaPredicted RBP29.57■■■□□ 2.32
VIM-203ENST00000469543 GOLGA3Q08378 1498 aa29.49■■■□□ 2.31
VIM-203ENST00000469543 CCER1Q8TC90 406 aaPredicted RBP29.45■■■□□ 2.3
VIM-203ENST00000469543 RAPGEF2Q9Y4G8 1499 aa29.34■■■□□ 2.29
VIM-203ENST00000469543 NCAPD3P42695 1498 aa29.33■■■□□ 2.29
VIM-203ENST00000469543 CEP164Q9UPV0 1460 aa29.33■■■□□ 2.29
VIM-203ENST00000469543 CLIP1P30622 1438 aa29.24■■■□□ 2.27
VIM-203ENST00000469543 TOP2BQ02880 1626 aa29.23■■■□□ 2.27
VIM-203ENST00000469543 KIF21BO75037 1637 aa29.21■■■□□ 2.27
VIM-203ENST00000469543 HMGXB3Q12766 1538 aa29.19■■■□□ 2.26
VIM-203ENST00000469543 CUX1P39880 1505 aa29.11■■■□□ 2.25
VIM-203ENST00000469543 HNRNPUL2Q1KMD3 747 aaKnown RBP29.11■■■□□ 2.25
VIM-203ENST00000469543 CFTRP13569 1480 aa29.06■■■□□ 2.24
VIM-203ENST00000469543 BIVM-ERCC5R4GMW8 1640 aa29.06■■■□□ 2.24
VIM-203ENST00000469543 VPS8Q8N3P4 1428 aa29.02■■■□□ 2.24
VIM-203ENST00000469543 APLP2Q06481 763 aa29■■■□□ 2.23
VIM-203ENST00000469543 PRXQ9BXM0 1461 aa28.95■■■□□ 2.23
VIM-203ENST00000469543 KIF27Q86VH2 1401 aa28.88■■■□□ 2.21
VIM-203ENST00000469543 CADPSQ9ULU8 1353 aa28.84■■■□□ 2.21
VIM-203ENST00000469543 KANK4Q5T7N3 995 aaPredicted RBP28.83■■■□□ 2.21
VIM-203ENST00000469543 CC2D2AQ9P2K1 1620 aa28.8■■■□□ 2.2
VIM-203ENST00000469543 ERICH3Q5RHP9 1530 aa28.78■■■□□ 2.2
VIM-203ENST00000469543 ARAP1Q96P48 1450 aa28.77■■■□□ 2.2
VIM-203ENST00000469543 CUX2O14529 1486 aa28.74■■■□□ 2.19
VIM-203ENST00000469543 IGF1RP08069 1367 aa28.71■■■□□ 2.19
VIM-203ENST00000469543 DIEXFQ68CQ4 756 aaKnown RBP28.69■■■□□ 2.18
VIM-203ENST00000469543 FGD5Q6ZNL6 1462 aa28.65■■■□□ 2.18
VIM-203ENST00000469543 NESP48681 1621 aa28.6■■■□□ 2.17
VIM-203ENST00000469543 DNAJC5BQ9UF47 199 aa28.6■■■□□ 2.17
VIM-203ENST00000469543 ARHGAP35Q9NRY4 1499 aa28.6■■■□□ 2.17
VIM-203ENST00000469543 PRDM2Q13029 1718 aa28.56■■■□□ 2.16
VIM-203ENST00000469543 FANCD2Q9BXW9 1451 aa28.56■■■□□ 2.16
VIM-203ENST00000469543 CARMIL1Q5VZK9 1371 aa28.55■■■□□ 2.16
VIM-203ENST00000469543 P3H3Q8IVL6 736 aa28.55■■■□□ 2.16
VIM-203ENST00000469543 RAD54L2Q9Y4B4 1467 aa28.51■■■□□ 2.15
VIM-203ENST00000469543 ITGAEP38570 1179 aa28.51■■■□□ 2.15
VIM-203ENST00000469543 SCAF1Q9H7N4 1312 aaKnown RBP28.5■■■□□ 2.15
VIM-203ENST00000469543 ZNF316A6NFI3 1004 aaPredicted RBP28.48■■■□□ 2.15
VIM-203ENST00000469543 ATP1B4Q9UN42 357 aaPredicted RBP28.4■■■□□ 2.14
VIM-203ENST00000469543 NEUROD1Q13562 356 aa28.34■■■□□ 2.13
VIM-203ENST00000469543 POLA1P09884 1462 aaPredicted RBP28.34■■■□□ 2.13
VIM-203ENST00000469543 TOPBP1Q92547 1522 aa28.33■■■□□ 2.12
VIM-203ENST00000469543 DHX57Q6P158 1386 aaKnown RBP28.3■■■□□ 2.12
VIM-203ENST00000469543 RRBP1Q9P2E9 1410 aaKnown RBP28.28■■■□□ 2.12
VIM-203ENST00000469543 CCNB3Q8WWL7 1395 aa28.27■■■□□ 2.12
VIM-203ENST00000469543 DNMBPQ6XZF7 1577 aa28.26■■■□□ 2.11
VIM-203ENST00000469543 TDRD9Q8NDG6 1382 aaKnown RBP28.23■■■□□ 2.11
VIM-203ENST00000469543 ACIN1Q9UKV3 1341 aaKnown RBP28.21■■■□□ 2.11
VIM-203ENST00000469543 ABCA10Q8WWZ4 1543 aa28.2■■■□□ 2.11
VIM-203ENST00000469543 FHOD3Q2V2M9 1422 aa28.19■■■□□ 2.1
Retrieved 100 of 20,778 RNA–protein pairs in 57.3 ms