RNA–Protein interactions for RNA: ENST00000638041.1

MECP2-225, Transcript of methyl-CpG binding protein 2, humanhuman

TSL 5

Gene MECP2, Length 100 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MECP2-225ENST00000638041 NISCHQ9Y2I1 1504 aa16.91■□□□□ 0.3
MECP2-225ENST00000638041 CCDC180Q9P1Z9 1646 aa15.16■□□□□ 0.02
MECP2-225ENST00000638041 ABCC9O60706 1549 aa14.82□□□□□ -0.04
MECP2-225ENST00000638041 RB1CC1Q8TDY2 1594 aa14.37□□□□□ -0.11
MECP2-225ENST00000638041 DCAF8L2P0C7V8 631 aa14.35□□□□□ -0.11
MECP2-225ENST00000638041 NACADO15069 1562 aa14.31□□□□□ -0.12
MECP2-225ENST00000638041 MYO15BQ96JP2 1530 aa14.18□□□□□ -0.14
MECP2-225ENST00000638041 DCAF1Q9Y4B6 1507 aa14.06□□□□□ -0.16
MECP2-225ENST00000638041 ZCCHC6Q5VYS8 1495 aaKnown RBP14.04□□□□□ -0.16
MECP2-225ENST00000638041 AEBP2Q6ZN18 517 aaPredicted RBP13.99□□□□□ -0.17
MECP2-225ENST00000638041 SHROOM4Q9ULL8 1493 aa13.83□□□□□ -0.2
MECP2-225ENST00000638041 PABPN1Q86U42 306 aaKnown RBP eCLIP13.82□□□□□ -0.2
MECP2-225ENST00000638041 UNC13AQ9UPW8 1703 aa13.79□□□□□ -0.2
MECP2-225ENST00000638041 SCRIBQ14160 1630 aa13.72□□□□□ -0.21
MECP2-225ENST00000638041 BICRAQ9NZM4 1560 aa13.66□□□□□ -0.22
MECP2-225ENST00000638041 CHIC1Q5VXU3 224 aa13.63□□□□□ -0.23
MECP2-225ENST00000638041 DNAJC5BQ9UF47 199 aa13.49□□□□□ -0.25
MECP2-225ENST00000638041 EIF4G1Q04637 1599 aaKnown RBP13.45□□□□□ -0.26
MECP2-225ENST00000638041 CC2D2AQ9P2K1 1620 aa13.4□□□□□ -0.26
MECP2-225ENST00000638041 CECR2Q9BXF3 1484 aa13.39□□□□□ -0.27
MECP2-225ENST00000638041 BAZ1AQ9NRL2 1556 aaPredicted RBP13.21□□□□□ -0.29
MECP2-225ENST00000638041 SMARCA2P51531 1590 aa13.2□□□□□ -0.3
MECP2-225ENST00000638041 NCAPD3P42695 1498 aa13.14□□□□□ -0.31
MECP2-225ENST00000638041 SMARCA4P51532 1647 aa13.13□□□□□ -0.31
MECP2-225ENST00000638041 HMGXB3Q12766 1538 aa13.08□□□□□ -0.31
MECP2-225ENST00000638041 BAZ1BQ9UIG0 1483 aaKnown RBP13.08□□□□□ -0.32
MECP2-225ENST00000638041 ATAD2BQ9ULI0 1458 aa13.08□□□□□ -0.32
MECP2-225ENST00000638041 PEG3Q9GZU2 1588 aa13.02□□□□□ -0.33
MECP2-225ENST00000638041 ERCC6Q03468 1493 aa12.97□□□□□ -0.33
MECP2-225ENST00000638041 MROH2BQ7Z745 1585 aa12.94□□□□□ -0.34
MECP2-225ENST00000638041 LAMC3Q9Y6N6 1575 aa12.88□□□□□ -0.35
MECP2-225ENST00000638041 PDS5BQ9NTI5 1447 aa12.88□□□□□ -0.35
MECP2-225ENST00000638041 CUX2O14529 1486 aa12.82□□□□□ -0.36
MECP2-225ENST00000638041 WIZO95785 1651 aa12.82□□□□□ -0.36
MECP2-225ENST00000638041 RSF1Q96T23 1441 aaPredicted RBP12.81□□□□□ -0.36
MECP2-225ENST00000638041 CADPSQ9ULU8 1353 aa12.79□□□□□ -0.36
MECP2-225ENST00000638041 TOP2AP11388 1531 aaKnown RBP12.77□□□□□ -0.37
MECP2-225ENST00000638041 NESP48681 1621 aa12.7□□□□□ -0.38
MECP2-225ENST00000638041 CEP164Q9UPV0 1460 aa12.66□□□□□ -0.38
MECP2-225ENST00000638041 CFTRP13569 1480 aa12.64□□□□□ -0.39
MECP2-225ENST00000638041 MRC2Q9UBG0 1479 aa12.63□□□□□ -0.39
MECP2-225ENST00000638041 FANCD2Q9BXW9 1451 aa12.61□□□□□ -0.39
MECP2-225ENST00000638041 KIF21AQ7Z4S6 1674 aa12.61□□□□□ -0.39
MECP2-225ENST00000638041 ABCC8Q09428 1581 aa12.58□□□□□ -0.4
MECP2-225ENST00000638041 PRDM2Q13029 1718 aa12.57□□□□□ -0.4
MECP2-225ENST00000638041 THOC2Q8NI27 1593 aaKnown RBP12.57□□□□□ -0.4
MECP2-225ENST00000638041 CCDC88BA6NC98 1476 aa12.57□□□□□ -0.4
MECP2-225ENST00000638041 SUPT5HO00267 1087 aaKnown RBP12.54□□□□□ -0.4
MECP2-225ENST00000638041 WDR62O43379 1518 aa12.53□□□□□ -0.4
MECP2-225ENST00000638041 DNAJC5Q9H3Z4 198 aa12.47□□□□□ -0.41
MECP2-225ENST00000638041 IFT140Q96RY7 1462 aa12.4□□□□□ -0.42
MECP2-225ENST00000638041 DNMBPQ6XZF7 1577 aa12.39□□□□□ -0.43
MECP2-225ENST00000638041 URB2Q14146 1524 aaKnown RBP12.37□□□□□ -0.43
MECP2-225ENST00000638041 TOPBP1Q92547 1522 aa12.36□□□□□ -0.43
MECP2-225ENST00000638041 OSCARQ8IYS5 282 aa12.34□□□□□ -0.43
MECP2-225ENST00000638041 WDR97A6NE52 1622 aa12.29□□□□□ -0.44
MECP2-225ENST00000638041 SOGA1O94964 1423 aa12.28□□□□□ -0.44
MECP2-225ENST00000638041 POLA1P09884 1462 aaPredicted RBP12.23□□□□□ -0.45
MECP2-225ENST00000638041 WRNQ14191 1432 aaPredicted RBP eCLIP12.22□□□□□ -0.45
MECP2-225ENST00000638041 FBLN2P98095 1184 aa12.22□□□□□ -0.45
MECP2-225ENST00000638041 FGD5Q6ZNL6 1462 aa12.21□□□□□ -0.45
MECP2-225ENST00000638041 CHMP7Q8WUX9 453 aaPredicted RBP12.2□□□□□ -0.46
MECP2-225ENST00000638041 EIF4G3O43432 1585 aaKnown RBP12.19□□□□□ -0.46
MECP2-225ENST00000638041 TARBP1Q13395 1621 aaKnown RBP12.17□□□□□ -0.46
MECP2-225ENST00000638041 CUX1P39880 1505 aa12.16□□□□□ -0.46
MECP2-225ENST00000638041 ZNF608Q9ULD9 1512 aaPredicted RBP12.16□□□□□ -0.46
MECP2-225ENST00000638041 GRIN2BQ13224 1484 aa12.16□□□□□ -0.46
MECP2-225ENST00000638041 AQRO60306 1485 aaKnown RBP eCLIP12.15□□□□□ -0.46
MECP2-225ENST00000638041 MAGI1Q96QZ7 1491 aaPredicted RBP12.15□□□□□ -0.46
MECP2-225ENST00000638041 TDRD9Q8NDG6 1382 aaKnown RBP12.14□□□□□ -0.47
MECP2-225ENST00000638041 RAD54L2Q9Y4B4 1467 aa12.14□□□□□ -0.47
MECP2-225ENST00000638041 TOP2BQ02880 1626 aa12.13□□□□□ -0.47
MECP2-225ENST00000638041 GAPVD1Q14C86 1478 aa12.13□□□□□ -0.47
MECP2-225ENST00000638041 ABCA10Q8WWZ4 1543 aa12.11□□□□□ -0.47
MECP2-225ENST00000638041 BIVM-ERCC5R4GMW8 1640 aa12.11□□□□□ -0.47
MECP2-225ENST00000638041 SYNJ1O43426 1573 aa12.09□□□□□ -0.47
MECP2-225ENST00000638041 PHF23Q9BUL5 403 aaPredicted RBP12.08□□□□□ -0.48
MECP2-225ENST00000638041 SYNJ2O15056 1496 aa12.08□□□□□ -0.48
MECP2-225ENST00000638041 SNAPC4Q5SXM2 1469 aa12.08□□□□□ -0.48
MECP2-225ENST00000638041 TRIM41Q8WV44 630 aa12.07□□□□□ -0.48
MECP2-225ENST00000638041 PBRM1Q86U86 1689 aa12.05□□□□□ -0.48
MECP2-225ENST00000638041 CHD1O14646 1710 aa12.04□□□□□ -0.48
MECP2-225ENST00000638041 ERICH3Q5RHP9 1530 aa12.03□□□□□ -0.48
MECP2-225ENST00000638041 KIF27Q86VH2 1401 aa12.03□□□□□ -0.48
MECP2-225ENST00000638041 FAM9AQ8IZU1 332 aaPredicted RBP12.02□□□□□ -0.49
MECP2-225ENST00000638041 FHAD1B1AJZ9 1412 aa12.01□□□□□ -0.49
MECP2-225ENST00000638041 ABCA5Q8WWZ7 1642 aa12□□□□□ -0.49
MECP2-225ENST00000638041 ARHGEF11O15085 1522 aa11.96□□□□□ -0.49
MECP2-225ENST00000638041 GRIN2AQ12879 1464 aa11.95□□□□□ -0.5
MECP2-225ENST00000638041 CYB5RLQ6IPT4 315 aa11.95□□□□□ -0.5
MECP2-225ENST00000638041 RIMBP3CA6NJZ7 1639 aa11.95□□□□□ -0.5
MECP2-225ENST00000638041 RIMBP3BA6NNM3 1639 aa11.95□□□□□ -0.5
MECP2-225ENST00000638041 RIMBP3Q9UFD9 1639 aa11.95□□□□□ -0.5
MECP2-225ENST00000638041 CUL7Q14999 1698 aa11.93□□□□□ -0.5
MECP2-225ENST00000638041 ADAMTS12P58397 1594 aa11.92□□□□□ -0.5
MECP2-225ENST00000638041 CLASP1Q7Z460 1538 aa11.9□□□□□ -0.5
MECP2-225ENST00000638041 NPM1P06748 294 aaKnown RBP eCLIP11.89□□□□□ -0.51
MECP2-225ENST00000638041 NUP160Q12769 1436 aa11.86□□□□□ -0.51
MECP2-225ENST00000638041 TRHP20396 242 aaPredicted RBP11.86□□□□□ -0.51
MECP2-225ENST00000638041 CARMIL1Q5VZK9 1371 aa11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 168 ms