Protein–RNA interactions for Protein: Q01081

U2AF1, Splicing factor U2AF 35 kDa subunit, humanhuman

Known RBP eCLIP

Length 240 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
U2AF1Q01081 SFSWAP-210ENST00000541286 3219 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.535e-8■■■□□ 18.1
U2AF1Q01081 SFSWAP-209ENST00000540469 3536 ntTSL 316.03■□□□□ 0.165e-8■■■□□ 18.1
U2AF1Q01081 AFDN-215ENST00000497596 728 ntTSL 210.55□□□□□ -0.722e-8■■■□□ 18.1
U2AF1Q01081 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC29.08■■■□□ 2.255e-9■■■□□ 18
U2AF1Q01081 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC25.41■■□□□ 1.665e-9■■■□□ 18
U2AF1Q01081 AFDN-205ENST00000392108 6812 ntTSL 1 (best) BASIC18.53■□□□□ 0.565e-9■■■□□ 18
U2AF1Q01081 AFDN-203ENST00000366806 5962 ntTSL 1 (best) BASIC18.45■□□□□ 0.545e-9■■■□□ 18
U2AF1Q01081 AFDN-211ENST00000447894 5475 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.425e-9■■■□□ 18
U2AF1Q01081 AFDN-206ENST00000392112 7459 ntTSL 5 BASIC17.26■□□□□ 0.355e-9■■■□□ 18
U2AF1Q01081 AFDN-207ENST00000400822 7593 ntTSL 5 BASIC13.68□□□□□ -0.225e-9■■■□□ 18
U2AF1Q01081 AFDN-204ENST00000366809 4839 ntTSL 1 (best)12.21□□□□□ -0.465e-9■■■□□ 18
U2AF1Q01081 SREK1-212ENST00000522912 2047 ntTSL 1 (best)22.21■■□□□ 1.154e-10■■■□□ 18
U2AF1Q01081 SREK1-209ENST00000520953 2172 ntTSL 520.08■□□□□ 0.84e-10■■■□□ 18
U2AF1Q01081 SREK1-202ENST00000334121 6781 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.144e-10■■■□□ 18
U2AF1Q01081 SREK1-215ENST00000524111 4074 ntTSL 511.39□□□□□ -0.594e-10■■■□□ 18
U2AF1Q01081 SREK1-203ENST00000380918 2433 ntTSL 1 (best) BASIC7.05□□□□□ -1.284e-10■■■□□ 18
U2AF1Q01081 SREK1-210ENST00000521691 580 ntTSL 33.56□□□□□ -1.844e-10■■■□□ 18
U2AF1Q01081 SNHG1-214ENST00000540865 784 ntTSL 56.05□□□□□ -1.443e-8■■■□□ 17.9
U2AF1Q01081 SPTA1-207ENST00000485680 422 ntTSL 35.84□□□□□ -1.471e-9■■■□□ 17.9
U2AF1Q01081 SRRM2-207ENST00000571372 462 ntTSL 311.66□□□□□ -0.541e-6■■■□□ 17.9
U2AF1Q01081 AC005726.2-201ENST00000481916 2091 ntTSL 1 (best)27.83■■■□□ 2.057e-9■■■□□ 17.9
U2AF1Q01081 AC005726.2-202ENST00000531839 1033 ntAPPRIS P5 TSL 215.35■□□□□ 0.057e-9■■■□□ 17.9
U2AF1Q01081 BMP2K-203ENST00000502613 6902 ntTSL 1 (best)6.26□□□□□ -1.412e-7■■■□□ 17.9
U2AF1Q01081 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC28.51■■■□□ 2.163e-6■■■□□ 17.8
U2AF1Q01081 ZNF37BP-204ENST00000473592 2929 ntTSL 1 (best)21.11■□□□□ 0.973e-6■■■□□ 17.8
U2AF1Q01081 ZNF37BP-202ENST00000452075 8637 ntTSL 2 BASIC11.67□□□□□ -0.543e-6■■■□□ 17.8
U2AF1Q01081 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.525e-9■■■□□ 17.8
U2AF1Q01081 MYSM1-206ENST00000489282 698 ntTSL 223.01■■□□□ 1.275e-9■■■□□ 17.8
U2AF1Q01081 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC22.7■■□□□ 1.225e-9■■■□□ 17.8
U2AF1Q01081 DYNC1LI2-212ENST00000568180 573 ntTSL 522.63■■□□□ 1.215e-9■■■□□ 17.8
U2AF1Q01081 MYSM1-205ENST00000483003 378 ntTSL 1 (best)22.39■■□□□ 1.175e-9■■■□□ 17.8
U2AF1Q01081 DYNC1LI2-210ENST00000566150 568 ntTSL 322.28■■□□□ 1.165e-9■■■□□ 17.8
U2AF1Q01081 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC20.86■□□□□ 0.935e-9■■■□□ 17.8
U2AF1Q01081 DYNC1LI2-209ENST00000565532 744 ntTSL 515.44■□□□□ 0.065e-9■■■□□ 17.8
U2AF1Q01081 DYNC1LI2-204ENST00000561727 502 ntTSL 413.68□□□□□ -0.225e-9■■■□□ 17.8
U2AF1Q01081 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC21.69■■□□□ 1.063e-7■■■□□ 17.8
U2AF1Q01081 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC20.58■□□□□ 0.893e-7■■■□□ 17.8
U2AF1Q01081 ABCC3-208ENST00000506464 540 ntTSL 416.32■□□□□ 0.25e-7■■■□□ 17.8
U2AF1Q01081 VWDE-203ENST00000452576 5936 ntTSL 1 (best)15.26■□□□□ 0.033e-7■■■□□ 17.8
U2AF1Q01081 VWDE-201ENST00000275358 5260 ntAPPRIS P1 TSL 5 BASIC14.94□□□□□ -0.023e-7■■■□□ 17.8
U2AF1Q01081 VWDE-205ENST00000521169 4700 ntTSL 513.37□□□□□ -0.273e-7■■■□□ 17.8
U2AF1Q01081 VWDE-206ENST00000614403 4701 ntTSL 1 (best) BASIC13.37□□□□□ -0.273e-7■■■□□ 17.8
U2AF1Q01081 MAT2A-201ENST00000306434 2819 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.41e-7■■■□□ 17.8
U2AF1Q01081 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC22.6■■□□□ 1.215e-16■■■□□ 17.8
U2AF1Q01081 HNRNPU-217ENST00000638952 5678 ntTSL 521.65■■□□□ 1.062e-8■■■□□ 17.8
U2AF1Q01081 HNRNPU-228ENST00000640306 2917 ntTSL 521.25■□□□□ 0.992e-8■■■□□ 17.8
U2AF1Q01081 HNRNPU-205ENST00000444376 6827 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.892e-8■■■□□ 17.8
U2AF1Q01081 HNRNPU-209ENST00000476241 4844 ntTSL 520.46■□□□□ 0.872e-8■■■□□ 17.8
U2AF1Q01081 HNRNPU-214ENST00000638475 2698 ntTSL 519.59■□□□□ 0.732e-8■■■□□ 17.8
U2AF1Q01081 HNRNPU-204ENST00000440865 3207 ntTSL 2 BASIC19.53■□□□□ 0.722e-8■■■□□ 17.8
U2AF1Q01081 HNRNPU-201ENST00000283179 3120 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.72e-8■■■□□ 17.8
U2AF1Q01081 HNRNPU-229ENST00000640440 871 ntTSL 319.29■□□□□ 0.682e-8■■■□□ 17.8
U2AF1Q01081 HNRNPU-226ENST00000640218 6858 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.582e-8■■■□□ 17.8
U2AF1Q01081 RBM8A-202ENST00000484825 542 ntTSL 516.46■□□□□ 0.232e-8■■■□□ 17.8
U2AF1Q01081 RBM8A-209ENST00000634161 464 ntTSL 316.16■□□□□ 0.182e-8■■■□□ 17.8
U2AF1Q01081 RBM8A-203ENST00000498663 764 ntTSL 215.93■□□□□ 0.142e-8■■■□□ 17.8
U2AF1Q01081 HNRNPU-212ENST00000638230 1922 ntTSL 515.39■□□□□ 0.052e-8■■■□□ 17.8
U2AF1Q01081 HNRNPU-224ENST00000640056 2045 ntTSL 512.55□□□□□ -0.42e-8■■■□□ 17.8
U2AF1Q01081 HNRNPU-216ENST00000638716 2640 ntTSL 5 BASIC12.23□□□□□ -0.452e-8■■■□□ 17.8
U2AF1Q01081 HNRNPU-202ENST00000366525 2851 ntTSL 512.04□□□□□ -0.482e-8■■■□□ 17.8
U2AF1Q01081 HNRNPU-219ENST00000639628 4546 ntTSL 1 (best) BASIC11□□□□□ -0.652e-8■■■□□ 17.8
U2AF1Q01081 HNRNPU-222ENST00000639880 4239 ntTSL 510.82□□□□□ -0.682e-8■■■□□ 17.8
U2AF1Q01081 HNRNPU-223ENST00000640001 4227 ntTSL 5 BASIC10.1□□□□□ -0.792e-8■■■□□ 17.8
U2AF1Q01081 HNRNPU-207ENST00000468690 5273 ntTSL 59.91□□□□□ -0.822e-8■■■□□ 17.8
U2AF1Q01081 HNRNPU-206ENST00000465881 883 ntTSL 58.87□□□□□ -0.992e-8■■■□□ 17.8
U2AF1Q01081 HNRNPU-213ENST00000638301 3650 ntTSL 58.56□□□□□ -1.042e-8■■■□□ 17.8
U2AF1Q01081 HNRNPU-220ENST00000639667 3940 ntTSL 27.76□□□□□ -1.172e-8■■■□□ 17.8
U2AF1Q01081 HNRNPU-210ENST00000483966 1069 ntTSL 25.17□□□□□ -1.582e-8■■■□□ 17.8
U2AF1Q01081 HNRNPU-215ENST00000638589 2225 ntTSL 23.98□□□□□ -1.772e-8■■■□□ 17.8
U2AF1Q01081 BAG6-258ENST00000464126 609 ntTSL 219.75■□□□□ 0.752e-15■■■□□ 17.7
U2AF1Q01081 BAG6-249ENST00000441793 783 ntTSL 216.09■□□□□ 0.172e-15■■■□□ 17.7
U2AF1Q01081 BAG6-237ENST00000375976 3644 ntAPPRIS P3 TSL 1 (best) BASIC15.54■□□□□ 0.082e-15■■■□□ 17.7
U2AF1Q01081 BAG6-247ENST00000439687 3104 ntTSL 2 BASIC15.29■□□□□ 0.042e-15■■■□□ 17.7
U2AF1Q01081 BAG6-235ENST00000362049 3626 ntTSL 2 BASIC15.25■□□□□ 0.032e-15■■■□□ 17.7
U2AF1Q01081 BAG6-234ENST00000211379 3779 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.122e-15■■■□□ 17.7
U2AF1Q01081 BAG6-236ENST00000375964 3815 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.182e-15■■■□□ 17.7
U2AF1Q01081 BAG6-238ENST00000422948 513 ntTSL 29.06□□□□□ -0.962e-15■■■□□ 17.7
U2AF1Q01081 DDX39B-217ENST00000474961 974 ntTSL 212.67□□□□□ -0.383e-17■■■□□ 17.7
U2AF1Q01081 DDX39B-218ENST00000478365 439 ntTSL 210.57□□□□□ -0.723e-17■■■□□ 17.7
U2AF1Q01081 RBMX-204ENST00000464781 1852 ntTSL 218.08■□□□□ 0.492e-9■■■□□ 17.7
U2AF1Q01081 RBMX-209ENST00000565438 1292 ntTSL 5 BASIC17.42■□□□□ 0.382e-9■■■□□ 17.7
U2AF1Q01081 RBMX-211ENST00000567262 477 ntTSL 516.4■□□□□ 0.222e-9■■■□□ 17.7
U2AF1Q01081 RBMX-201ENST00000320676 2012 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.122e-9■■■□□ 17.7
U2AF1Q01081 RBMX-207ENST00000562646 2148 ntTSL 1 (best) BASIC12.58□□□□□ -0.42e-9■■■□□ 17.7
U2AF1Q01081 RBMX-202ENST00000419968 940 ntTSL 512.46□□□□□ -0.412e-9■■■□□ 17.7
U2AF1Q01081 RBMX-212ENST00000568578 4887 ntTSL 1 (best)12.35□□□□□ -0.432e-9■■■□□ 17.7
U2AF1Q01081 RBMX-203ENST00000431446 2004 ntTSL 2 BASIC6.74□□□□□ -1.332e-9■■■□□ 17.7
U2AF1Q01081 PRPF38B-201ENST00000370021 3728 ntTSL 1 (best) BASIC13.14□□□□□ -0.319e-7■■■□□ 17.6
U2AF1Q01081 PRPF38B-203ENST00000370025 3693 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.339e-7■■■□□ 17.6
U2AF1Q01081 PRPF38B-205ENST00000485810 1352 ntTSL 24.67□□□□□ -1.669e-7■■■□□ 17.6
U2AF1Q01081 PHF8-203ENST00000338946 4651 ntAPPRIS ALT2 TSL 2 BASIC20.38■□□□□ 0.858e-15■■■□□ 17.6
U2AF1Q01081 PHF8-202ENST00000338154 6062 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.418e-15■■■□□ 17.6
U2AF1Q01081 PHF8-204ENST00000357988 6024 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.158e-15■■■□□ 17.6
U2AF1Q01081 PHF8-201ENST00000322659 2921 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.158e-15■■■□□ 17.6
U2AF1Q01081 PHF8-211ENST00000443302 2724 ntTSL 1 (best)13.59□□□□□ -0.238e-15■■■□□ 17.6
U2AF1Q01081 PHF8-205ENST00000396282 3344 ntTSL 512.79□□□□□ -0.368e-15■■■□□ 17.6
U2AF1Q01081 IARS-207ENST00000467876 298 ntTSL 33.67□□□□□ -1.822e-9■■■□□ 17.6
U2AF1Q01081 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC24.08■■□□□ 1.441e-7■■■□□ 17.6
U2AF1Q01081 CLK1-201ENST00000321356 1888 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.631e-7■■■□□ 17.6
U2AF1Q01081 CLK1-215ENST00000621181 1843 ntTSL 1 (best) BASIC10.42□□□□□ -0.741e-7■■■□□ 17.6
Retrieved 100 of 10,096 protein–RNA pairs in 60.6 ms