RNA–Protein interactions for RNA: ENST00000478365.1

DDX39B-218, Transcript of DExD-box helicase 39B, humanhuman

TSL 2

Gene DDX39B, Length 439 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX39B-218ENST00000478365 NISCHQ9Y2I1 1504 aa19.23■□□□□ 0.67
DDX39B-218ENST00000478365 CCDC180Q9P1Z9 1646 aa17.19■□□□□ 0.34
DDX39B-218ENST00000478365 ABCC9O60706 1549 aa16.67■□□□□ 0.26
DDX39B-218ENST00000478365 AEBP2Q6ZN18 517 aaPredicted RBP16.52■□□□□ 0.24
DDX39B-218ENST00000478365 RB1CC1Q8TDY2 1594 aa16.17■□□□□ 0.18
DDX39B-218ENST00000478365 NACADO15069 1562 aa16.15■□□□□ 0.18
DDX39B-218ENST00000478365 MYO15BQ96JP2 1530 aa16.1■□□□□ 0.17
DDX39B-218ENST00000478365 ZCCHC6Q5VYS8 1495 aaKnown RBP16.03■□□□□ 0.16
DDX39B-218ENST00000478365 DCAF1Q9Y4B6 1507 aa16■□□□□ 0.15
DDX39B-218ENST00000478365 DCAF8L2P0C7V8 631 aa15.96■□□□□ 0.15
DDX39B-218ENST00000478365 UNC13AQ9UPW8 1703 aa15.7■□□□□ 0.1
DDX39B-218ENST00000478365 SHROOM4Q9ULL8 1493 aa15.62■□□□□ 0.09
DDX39B-218ENST00000478365 BICRAQ9NZM4 1560 aa15.57■□□□□ 0.08
DDX39B-218ENST00000478365 SCRIBQ14160 1630 aa15.55■□□□□ 0.08
DDX39B-218ENST00000478365 CHIC1Q5VXU3 224 aa15.55■□□□□ 0.08
DDX39B-218ENST00000478365 PABPN1Q86U42 306 aaKnown RBP eCLIP15.53■□□□□ 0.084e-19■□□□□ 10.8
DDX39B-218ENST00000478365 DNAJC5BQ9UF47 199 aa15.21■□□□□ 0.03
DDX39B-218ENST00000478365 EIF4G1Q04637 1599 aaKnown RBP15.2■□□□□ 0.02
DDX39B-218ENST00000478365 CC2D2AQ9P2K1 1620 aa15.12■□□□□ 0.01
DDX39B-218ENST00000478365 CECR2Q9BXF3 1484 aa15.04■□□□□ -0
DDX39B-218ENST00000478365 BAZ1AQ9NRL2 1556 aaPredicted RBP14.95□□□□□ -0.02
DDX39B-218ENST00000478365 SMARCA4P51532 1647 aa14.92□□□□□ -0.02
DDX39B-218ENST00000478365 SMARCA2P51531 1590 aa14.9□□□□□ -0.02
DDX39B-218ENST00000478365 NCAPD3P42695 1498 aa14.87□□□□□ -0.03
DDX39B-218ENST00000478365 ATAD2BQ9ULI0 1458 aa14.83□□□□□ -0.03
DDX39B-218ENST00000478365 HMGXB3Q12766 1538 aa14.83□□□□□ -0.04
DDX39B-218ENST00000478365 PEG3Q9GZU2 1588 aa14.82□□□□□ -0.04
DDX39B-218ENST00000478365 MROH2BQ7Z745 1585 aa14.76□□□□□ -0.05
DDX39B-218ENST00000478365 BAZ1BQ9UIG0 1483 aaKnown RBP14.75□□□□□ -0.05
DDX39B-218ENST00000478365 RSF1Q96T23 1441 aaPredicted RBP14.61□□□□□ -0.07
DDX39B-218ENST00000478365 WIZO95785 1651 aa14.58□□□□□ -0.07
DDX39B-218ENST00000478365 TOP2AP11388 1531 aaKnown RBP14.52□□□□□ -0.08
DDX39B-218ENST00000478365 LAMC3Q9Y6N6 1575 aa14.51□□□□□ -0.09
DDX39B-218ENST00000478365 ERCC6Q03468 1493 aa14.46□□□□□ -0.09
DDX39B-218ENST00000478365 CADPSQ9ULU8 1353 aa14.42□□□□□ -0.1
DDX39B-218ENST00000478365 PDS5BQ9NTI5 1447 aa14.41□□□□□ -0.1
DDX39B-218ENST00000478365 NESP48681 1621 aa14.39□□□□□ -0.11
DDX39B-218ENST00000478365 CUX2O14529 1486 aa14.37□□□□□ -0.11
DDX39B-218ENST00000478365 CFTRP13569 1480 aa14.33□□□□□ -0.12
DDX39B-218ENST00000478365 CCDC88BA6NC98 1476 aa14.28□□□□□ -0.12
DDX39B-218ENST00000478365 KIF21AQ7Z4S6 1674 aa14.28□□□□□ -0.12
DDX39B-218ENST00000478365 PRDM2Q13029 1718 aa14.27□□□□□ -0.12
DDX39B-218ENST00000478365 THOC2Q8NI27 1593 aaKnown RBP14.26□□□□□ -0.13
DDX39B-218ENST00000478365 CEP164Q9UPV0 1460 aa14.25□□□□□ -0.13
DDX39B-218ENST00000478365 FANCD2Q9BXW9 1451 aa14.24□□□□□ -0.13
DDX39B-218ENST00000478365 MRC2Q9UBG0 1479 aa14.24□□□□□ -0.13
DDX39B-218ENST00000478365 WDR62O43379 1518 aa14.19□□□□□ -0.14
DDX39B-218ENST00000478365 SUPT5HO00267 1087 aaKnown RBP14.16□□□□□ -0.14
DDX39B-218ENST00000478365 ABCC8Q09428 1581 aa14.12□□□□□ -0.15
DDX39B-218ENST00000478365 URB2Q14146 1524 aaKnown RBP14.06□□□□□ -0.16
DDX39B-218ENST00000478365 DNMBPQ6XZF7 1577 aa14.03□□□□□ -0.16
DDX39B-218ENST00000478365 SENP3Q9H4L4 574 aaPredicted RBP14.01□□□□□ -0.17
DDX39B-218ENST00000478365 TOPBP1Q92547 1522 aa14□□□□□ -0.17
DDX39B-218ENST00000478365 IFT140Q96RY7 1462 aa13.98□□□□□ -0.17
DDX39B-218ENST00000478365 POLA1P09884 1462 aaPredicted RBP13.88□□□□□ -0.19
DDX39B-218ENST00000478365 WDR97A6NE52 1622 aa13.88□□□□□ -0.19
DDX39B-218ENST00000478365 CUX1P39880 1505 aa13.86□□□□□ -0.19
DDX39B-218ENST00000478365 PHF23Q9BUL5 403 aaPredicted RBP13.86□□□□□ -0.19
DDX39B-218ENST00000478365 TARBP1Q13395 1621 aaKnown RBP13.85□□□□□ -0.19
DDX39B-218ENST00000478365 DNAJC5Q9H3Z4 198 aa13.84□□□□□ -0.19
DDX39B-218ENST00000478365 FGD5Q6ZNL6 1462 aa13.84□□□□□ -0.19
DDX39B-218ENST00000478365 SOGA1O94964 1423 aa13.82□□□□□ -0.2
DDX39B-218ENST00000478365 WRNQ14191 1432 aaPredicted RBP eCLIP13.81□□□□□ -0.2
DDX39B-218ENST00000478365 EIF4G3O43432 1585 aaKnown RBP13.8□□□□□ -0.2
DDX39B-218ENST00000478365 BIVM-ERCC5R4GMW8 1640 aa13.8□□□□□ -0.2
DDX39B-218ENST00000478365 ZNF608Q9ULD9 1512 aaPredicted RBP13.8□□□□□ -0.2
DDX39B-218ENST00000478365 TOP2BQ02880 1626 aa13.79□□□□□ -0.2
DDX39B-218ENST00000478365 ABCA10Q8WWZ4 1543 aa13.75□□□□□ -0.21
DDX39B-218ENST00000478365 RAD54L2Q9Y4B4 1467 aa13.75□□□□□ -0.21
DDX39B-218ENST00000478365 AQRO60306 1485 aaKnown RBP eCLIP13.73□□□□□ -0.21
DDX39B-218ENST00000478365 SYNJ1O43426 1573 aa13.72□□□□□ -0.21
DDX39B-218ENST00000478365 OSCARQ8IYS5 282 aa13.71□□□□□ -0.21
DDX39B-218ENST00000478365 GRIN2BQ13224 1484 aa13.71□□□□□ -0.21
DDX39B-218ENST00000478365 MAGI1Q96QZ7 1491 aaPredicted RBP13.71□□□□□ -0.21
DDX39B-218ENST00000478365 TDRD9Q8NDG6 1382 aaKnown RBP13.7□□□□□ -0.22
DDX39B-218ENST00000478365 GAPVD1Q14C86 1478 aa13.68□□□□□ -0.22
DDX39B-218ENST00000478365 ABCA5Q8WWZ7 1642 aa13.68□□□□□ -0.22
DDX39B-218ENST00000478365 PBRM1Q86U86 1689 aa13.65□□□□□ -0.22
DDX39B-218ENST00000478365 SNAPC4Q5SXM2 1469 aa13.64□□□□□ -0.23
DDX39B-218ENST00000478365 SYNJ2O15056 1496 aa13.62□□□□□ -0.23
DDX39B-218ENST00000478365 CHD1O14646 1710 aa13.62□□□□□ -0.23
DDX39B-218ENST00000478365 ERICH3Q5RHP9 1530 aa13.61□□□□□ -0.23
DDX39B-218ENST00000478365 CHMP7Q8WUX9 453 aaPredicted RBP13.59□□□□□ -0.23
DDX39B-218ENST00000478365 FBLN2P98095 1184 aa13.57□□□□□ -0.24
DDX39B-218ENST00000478365 KIF27Q86VH2 1401 aa13.56□□□□□ -0.24
DDX39B-218ENST00000478365 FHAD1B1AJZ9 1412 aa13.56□□□□□ -0.24
DDX39B-218ENST00000478365 ADAMTS12P58397 1594 aa13.55□□□□□ -0.24
DDX39B-218ENST00000478365 GRIN2AQ12879 1464 aa13.51□□□□□ -0.25
DDX39B-218ENST00000478365 CUL7Q14999 1698 aa13.5□□□□□ -0.25
DDX39B-218ENST00000478365 CLASP1Q7Z460 1538 aa13.49□□□□□ -0.25
DDX39B-218ENST00000478365 ARHGEF11O15085 1522 aa13.46□□□□□ -0.25
DDX39B-218ENST00000478365 NUP160Q12769 1436 aa13.46□□□□□ -0.26
DDX39B-218ENST00000478365 RIMBP3CA6NJZ7 1639 aa13.46□□□□□ -0.26
DDX39B-218ENST00000478365 RIMBP3BA6NNM3 1639 aa13.46□□□□□ -0.26
DDX39B-218ENST00000478365 RIMBP3Q9UFD9 1639 aa13.46□□□□□ -0.26
DDX39B-218ENST00000478365 TRIM41Q8WV44 630 aa13.44□□□□□ -0.26
DDX39B-218ENST00000478365 IGF1RP08069 1367 aa13.44□□□□□ -0.26
DDX39B-218ENST00000478365 CEP170Q5SW79 1584 aa13.4□□□□□ -0.26
DDX39B-218ENST00000478365 CARMIL1Q5VZK9 1371 aa13.39□□□□□ -0.27
DDX39B-218ENST00000478365 SHROOM2Q13796 1616 aa13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms