RNA–Protein interactions for RNA: ENST00000640001.1

HNRNPU-223, Transcript of heterogeneous nuclear ribonucleoprotein U, human

TSL 5 BASIC

Gene HNRNPU, Length 4,227 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HNRNPU-223	ENST00000640001	NISCH	Q9Y2I1	1504 aa		15.45	■□□□□ 0.06
HNRNPU-223	ENST00000640001	DCAF8L2	P0C7V8	631 aa		13.85	□□□□□ -0.19
HNRNPU-223	ENST00000640001	SHROOM4	Q9ULL8	1493 aa		13.71	□□□□□ -0.22
HNRNPU-223	ENST00000640001	SUPT5H	O00267	1087 aa	Known RBP	13.52	□□□□□ -0.25
HNRNPU-223	ENST00000640001	ZCCHC6	Q5VYS8	1495 aa	Known RBP	12.96	□□□□□ -0.33
HNRNPU-223	ENST00000640001	CCDC180	Q9P1Z9	1646 aa		12.96	□□□□□ -0.33
HNRNPU-223	ENST00000640001	ABCC9	O60706	1549 aa		12.71	□□□□□ -0.37
HNRNPU-223	ENST00000640001	CHIC1	Q5VXU3	224 aa		12.7	□□□□□ -0.38
HNRNPU-223	ENST00000640001	EHMT2	Q96KQ7	1210 aa		12.66	□□□□□ -0.38
HNRNPU-223	ENST00000640001	FAM9A	Q8IZU1	332 aa	Predicted RBP	12.6	□□□□□ -0.39
HNRNPU-223	ENST00000640001	TRIM41	Q8WV44	630 aa		12.53	□□□□□ -0.4
HNRNPU-223	ENST00000640001	SCRIB	Q14160	1630 aa		12.5	□□□□□ -0.41
HNRNPU-223	ENST00000640001	PCGF6	Q9BYE7	350 aa		12.5	□□□□□ -0.41
HNRNPU-223	ENST00000640001	LOC105371045	A0A1W2PR82	267 aa		12.47	□□□□□ -0.41
HNRNPU-223	ENST00000640001	DCAF1	Q9Y4B6	1507 aa		12.46	□□□□□ -0.41
HNRNPU-223	ENST00000640001	PABPN1	Q86U42	306 aa	Known RBP eCLIP	12.32	□□□□□ -0.44
HNRNPU-223	ENST00000640001	MYO15B	Q96JP2	1530 aa		12.32	□□□□□ -0.44
HNRNPU-223	ENST00000640001	RSF1	Q96T23	1441 aa	Predicted RBP	12.27	□□□□□ -0.45
HNRNPU-223	ENST00000640001	NACAD	O15069	1562 aa		12.23	□□□□□ -0.45
HNRNPU-223	ENST00000640001	TTBK1	Q5TCY1	1321 aa	Predicted RBP	12.2	□□□□□ -0.46
HNRNPU-223	ENST00000640001	PPARGC1B	Q86YN6	1023 aa	Known RBP	12.17	□□□□□ -0.46
HNRNPU-223	ENST00000640001	HRC	P23327	699 aa		12.16	□□□□□ -0.46
HNRNPU-223	ENST00000640001	CECR2	Q9BXF3	1484 aa		12.15	□□□□□ -0.46
HNRNPU-223	ENST00000640001	RB1CC1	Q8TDY2	1594 aa		12.15	□□□□□ -0.46
HNRNPU-223	ENST00000640001	TRIM26	Q12899	539 aa	Predicted RBP	12.13	□□□□□ -0.47
HNRNPU-223	ENST00000640001	UBTF	P17480	764 aa	Known RBP	12.1	□□□□□ -0.47
HNRNPU-223	ENST00000640001	RANGAP1	P46060	587 aa	Predicted RBP	12.08	□□□□□ -0.48
HNRNPU-223	ENST00000640001	MROH2B	Q7Z745	1585 aa		12.04	□□□□□ -0.48
HNRNPU-223	ENST00000640001	APLP2	Q06481	763 aa		11.97	□□□□□ -0.49
HNRNPU-223	ENST00000640001	BAZ1A	Q9NRL2	1556 aa	Predicted RBP	11.94	□□□□□ -0.5
HNRNPU-223	ENST00000640001	ZEB1	P37275	1124 aa	Predicted RBP	11.92	□□□□□ -0.5
HNRNPU-223	ENST00000640001	CCER1	Q8TC90	406 aa	Predicted RBP	11.92	□□□□□ -0.5
HNRNPU-223	ENST00000640001	WIZ	O95785	1651 aa		11.91	□□□□□ -0.5
HNRNPU-223	ENST00000640001	CSRNP3	Q8WYN3	585 aa		11.85	□□□□□ -0.51
HNRNPU-223	ENST00000640001	HNRNPUL2-BSCL2	H3BQZ7	746 aa	Predicted RBP	11.8	□□□□□ -0.52
HNRNPU-223	ENST00000640001	CCDC88B	A6NC98	1476 aa		11.79	□□□□□ -0.52
HNRNPU-223	ENST00000640001	ABCC8	Q09428	1581 aa		11.75	□□□□□ -0.53
HNRNPU-223	ENST00000640001	SMARCA4	P51532	1647 aa		11.74	□□□□□ -0.53
HNRNPU-223	ENST00000640001	TOP2A	P11388	1531 aa	Known RBP	11.74	□□□□□ -0.53
HNRNPU-223	ENST00000640001	BAZ1B	Q9UIG0	1483 aa	Known RBP	11.73	□□□□□ -0.53
HNRNPU-223	ENST00000640001	HNRNPUL2	Q1KMD3	747 aa	Known RBP	11.73	□□□□□ -0.53
HNRNPU-223	ENST00000640001	ATP1B4	Q9UN42	357 aa	Predicted RBP	11.72	□□□□□ -0.53
HNRNPU-223	ENST00000640001	WRN	Q14191	1432 aa	Predicted RBP eCLIP	11.7	□□□□□ -0.54
HNRNPU-223	ENST00000640001	SOGA1	O94964	1423 aa		11.69	□□□□□ -0.54
HNRNPU-223	ENST00000640001	CEP162	Q5TB80	1403 aa		11.64	□□□□□ -0.55
HNRNPU-223	ENST00000640001	SMARCA2	P51531	1590 aa		11.62	□□□□□ -0.55
HNRNPU-223	ENST00000640001	EEA1	Q15075	1411 aa		11.61	□□□□□ -0.55
HNRNPU-223	ENST00000640001	ITGAE	P38570	1179 aa		11.6	□□□□□ -0.55
HNRNPU-223	ENST00000640001	ATAD2B	Q9ULI0	1458 aa		11.6	□□□□□ -0.55
HNRNPU-223	ENST00000640001	TNIK	Q9UKE5	1360 aa		11.58	□□□□□ -0.56
HNRNPU-223	ENST00000640001	GOLGA3	Q08378	1498 aa		11.58	□□□□□ -0.56
HNRNPU-223	ENST00000640001	RUSC2	Q8N2Y8	1516 aa		11.55	□□□□□ -0.56
HNRNPU-223	ENST00000640001	CLIP1	P30622	1438 aa		11.55	□□□□□ -0.56
HNRNPU-223	ENST00000640001	BICRA	Q9NZM4	1560 aa		11.53	□□□□□ -0.56
HNRNPU-223	ENST00000640001	CEP164	Q9UPV0	1460 aa		11.51	□□□□□ -0.57
HNRNPU-223	ENST00000640001	UNC13A	Q9UPW8	1703 aa		11.5	□□□□□ -0.57
HNRNPU-223	ENST00000640001	P3H3	Q8IVL6	736 aa		11.49	□□□□□ -0.57
HNRNPU-223	ENST00000640001	DIEXF	Q68CQ4	756 aa	Known RBP	11.45	□□□□□ -0.58
HNRNPU-223	ENST00000640001	YTHDC1	Q96MU7	727 aa	Known RBP	11.44	□□□□□ -0.58
HNRNPU-223	ENST00000640001	KIF27	Q86VH2	1401 aa		11.42	□□□□□ -0.58
HNRNPU-223	ENST00000640001	CENPB	P07199	599 aa	Predicted RBP	11.42	□□□□□ -0.58
HNRNPU-223	ENST00000640001	FAM50A	Q14320	339 aa	Known RBP	11.41	□□□□□ -0.58
HNRNPU-223	ENST00000640001	RAPGEF2	Q9Y4G8	1499 aa		11.38	□□□□□ -0.59
HNRNPU-223	ENST00000640001	SYNJ1	O43426	1573 aa		11.37	□□□□□ -0.59
HNRNPU-223	ENST00000640001	EIF4G1	Q04637	1599 aa	Known RBP	11.37	□□□□□ -0.59
HNRNPU-223	ENST00000640001	NCAPD3	P42695	1498 aa		11.35	□□□□□ -0.59
HNRNPU-223	ENST00000640001	CUX2	O14529	1486 aa		11.34	□□□□□ -0.59
HNRNPU-223	ENST00000640001	VPS8	Q8N3P4	1428 aa		11.34	□□□□□ -0.59
HNRNPU-223	ENST00000640001	ZNF316	A6NFI3	1004 aa	Predicted RBP	11.33	□□□□□ -0.6
HNRNPU-223	ENST00000640001	CADPS	Q9ULU8	1353 aa		11.31	□□□□□ -0.6
HNRNPU-223	ENST00000640001	PEG3	Q9GZU2	1588 aa		11.31	□□□□□ -0.6
HNRNPU-223	ENST00000640001	ARID3C	A6NKF2	412 aa		11.28	□□□□□ -0.6
HNRNPU-223	ENST00000640001	CARMIL1	Q5VZK9	1371 aa		11.28	□□□□□ -0.6
HNRNPU-223	ENST00000640001	KANK4	Q5T7N3	995 aa	Predicted RBP	11.27	□□□□□ -0.6
HNRNPU-223	ENST00000640001	NEUROD1	Q13562	356 aa		11.27	□□□□□ -0.61
HNRNPU-223	ENST00000640001	HMGXB3	Q12766	1538 aa		11.23	□□□□□ -0.61
HNRNPU-223	ENST00000640001	CFTR	P13569	1480 aa		11.22	□□□□□ -0.61
HNRNPU-223	ENST00000640001	FBLN2	P98095	1184 aa		11.22	□□□□□ -0.61
HNRNPU-223	ENST00000640001	KIF21B	O75037	1637 aa		11.21	□□□□□ -0.62
HNRNPU-223	ENST00000640001	TOP2B	Q02880	1626 aa		11.21	□□□□□ -0.62
HNRNPU-223	ENST00000640001	CUX1	P39880	1505 aa		11.2	□□□□□ -0.62
HNRNPU-223	ENST00000640001	FANCD2	Q9BXW9	1451 aa		11.19	□□□□□ -0.62
HNRNPU-223	ENST00000640001	FGD5	Q6ZNL6	1462 aa		11.17	□□□□□ -0.62
HNRNPU-223	ENST00000640001	IGF1R	P08069	1367 aa		11.17	□□□□□ -0.62
HNRNPU-223	ENST00000640001	TDRD9	Q8NDG6	1382 aa	Known RBP	11.17	□□□□□ -0.62
HNRNPU-223	ENST00000640001	CCNB3	Q8WWL7	1395 aa		11.15	□□□□□ -0.62
HNRNPU-223	ENST00000640001	ACIN1	Q9UKV3	1341 aa	Known RBP	11.15	□□□□□ -0.62
HNRNPU-223	ENST00000640001	TRIM52	Q96A61	297 aa		11.15	□□□□□ -0.62
HNRNPU-223	ENST00000640001	MTUS2	Q5JR59	1369 aa		11.15	□□□□□ -0.63
HNRNPU-223	ENST00000640001	PRX	Q9BXM0	1461 aa		11.14	□□□□□ -0.63
HNRNPU-223	ENST00000640001	CC2D2A	Q9P2K1	1620 aa		11.14	□□□□□ -0.63
HNRNPU-223	ENST00000640001	GTF3C3	Q9Y5Q9	886 aa		11.13	□□□□□ -0.63
HNRNPU-223	ENST00000640001	RAD54L2	Q9Y4B4	1467 aa		11.13	□□□□□ -0.63
HNRNPU-223	ENST00000640001	NES	P48681	1621 aa		11.11	□□□□□ -0.63
HNRNPU-223	ENST00000640001	MIER1	Q8N108	512 aa		11.11	□□□□□ -0.63
HNRNPU-223	ENST00000640001	FHAD1	B1AJZ9	1412 aa		11.11	□□□□□ -0.63
HNRNPU-223	ENST00000640001	ARAP1	Q96P48	1450 aa		11.1	□□□□□ -0.63
HNRNPU-223	ENST00000640001	PDS5B	Q9NTI5	1447 aa		11.1	□□□□□ -0.63
HNRNPU-223	ENST00000640001	ERICH3	Q5RHP9	1530 aa		11.1	□□□□□ -0.63
HNRNPU-223	ENST00000640001	FHOD3	Q2V2M9	1422 aa		11.09	□□□□□ -0.63

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