RNA–Protein interactions for RNA: ENST00000541286.5

SFSWAP-210, Transcript of splicing factor SWAP, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SFSWAP, Length 3,219 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-210ENST00000541286 NISCHQ9Y2I1 1504 aa31.44■■■□□ 2.62
SFSWAP-210ENST00000541286 CCDC180Q9P1Z9 1646 aa27.21■■□□□ 1.95
SFSWAP-210ENST00000541286 DCAF8L2P0C7V8 631 aa26.91■■□□□ 1.9
SFSWAP-210ENST00000541286 ABCC9O60706 1549 aa26.84■■□□□ 1.89
SFSWAP-210ENST00000541286 ZCCHC6Q5VYS8 1495 aaKnown RBP26.28■■□□□ 1.8
SFSWAP-210ENST00000541286 SHROOM4Q9ULL8 1493 aa26.19■■□□□ 1.78
SFSWAP-210ENST00000541286 SCRIBQ14160 1630 aa25.59■■□□□ 1.69
SFSWAP-210ENST00000541286 DCAF1Q9Y4B6 1507 aa25.59■■□□□ 1.69
SFSWAP-210ENST00000541286 NACADO15069 1562 aa25.54■■□□□ 1.68
SFSWAP-210ENST00000541286 RB1CC1Q8TDY2 1594 aa25.5■■□□□ 1.67
SFSWAP-210ENST00000541286 PABPN1Q86U42 306 aaKnown RBP eCLIP25.48■■□□□ 1.677e-7■■□□□ 12.9
SFSWAP-210ENST00000541286 MYO15BQ96JP2 1530 aa25.32■■□□□ 1.64
SFSWAP-210ENST00000541286 UNC13AQ9UPW8 1703 aa25.16■■□□□ 1.62
SFSWAP-210ENST00000541286 SUPT5HO00267 1087 aaKnown RBP24.97■■□□□ 1.59
SFSWAP-210ENST00000541286 BICRAQ9NZM4 1560 aa24.94■■□□□ 1.58
SFSWAP-210ENST00000541286 CECR2Q9BXF3 1484 aa24.81■■□□□ 1.56
SFSWAP-210ENST00000541286 MROH2BQ7Z745 1585 aa24.5■■□□□ 1.51
SFSWAP-210ENST00000541286 RSF1Q96T23 1441 aaPredicted RBP24.41■■□□□ 1.5
SFSWAP-210ENST00000541286 WIZO95785 1651 aa24.29■■□□□ 1.48
SFSWAP-210ENST00000541286 DNAJC5BQ9UF47 199 aa24.26■■□□□ 1.47
SFSWAP-210ENST00000541286 SMARCA4P51532 1647 aa24.24■■□□□ 1.47
SFSWAP-210ENST00000541286 EIF4G1Q04637 1599 aaKnown RBP24.21■■□□□ 1.47
SFSWAP-210ENST00000541286 BAZ1AQ9NRL2 1556 aaPredicted RBP24.2■■□□□ 1.46
SFSWAP-210ENST00000541286 CC2D2AQ9P2K1 1620 aa24.02■■□□□ 1.44
SFSWAP-210ENST00000541286 ATAD2BQ9ULI0 1458 aa24■■□□□ 1.43
SFSWAP-210ENST00000541286 BAZ1BQ9UIG0 1483 aaKnown RBP23.86■■□□□ 1.41
SFSWAP-210ENST00000541286 SMARCA2P51531 1590 aa23.76■■□□□ 1.39
SFSWAP-210ENST00000541286 TOP2AP11388 1531 aaKnown RBP23.73■■□□□ 1.39
SFSWAP-210ENST00000541286 CCDC88BA6NC98 1476 aa23.73■■□□□ 1.39
SFSWAP-210ENST00000541286 NCAPD3P42695 1498 aa23.7■■□□□ 1.38
SFSWAP-210ENST00000541286 PEG3Q9GZU2 1588 aa23.7■■□□□ 1.38
SFSWAP-210ENST00000541286 PPARGC1BQ86YN6 1023 aaKnown RBP23.65■■□□□ 1.38
SFSWAP-210ENST00000541286 HRCP23327 699 aa23.57■■□□□ 1.36
SFSWAP-210ENST00000541286 CHIC1Q5VXU3 224 aa23.56■■□□□ 1.36
SFSWAP-210ENST00000541286 HMGXB3Q12766 1538 aa23.51■■□□□ 1.35
SFSWAP-210ENST00000541286 PCGF6Q9BYE7 350 aa23.48■■□□□ 1.35
SFSWAP-210ENST00000541286 NESP48681 1621 aa23.48■■□□□ 1.35
SFSWAP-210ENST00000541286 ABCC8Q09428 1581 aa23.32■■□□□ 1.32
SFSWAP-210ENST00000541286 EHMT2Q96KQ7 1210 aa23.25■■□□□ 1.31
SFSWAP-210ENST00000541286 CADPSQ9ULU8 1353 aa23.22■■□□□ 1.31
SFSWAP-210ENST00000541286 FAM9AQ8IZU1 332 aaPredicted RBP23.21■■□□□ 1.31
SFSWAP-210ENST00000541286 TRIM41Q8WV44 630 aa23.2■■□□□ 1.3
SFSWAP-210ENST00000541286 LOC105371045A0A1W2PR82 267 aa23.19■■□□□ 1.3
SFSWAP-210ENST00000541286 CFTRP13569 1480 aa23.15■■□□□ 1.3
SFSWAP-210ENST00000541286 FANCD2Q9BXW9 1451 aa23.02■■□□□ 1.28
SFSWAP-210ENST00000541286 WRNQ14191 1432 aaPredicted RBP eCLIP22.96■■□□□ 1.279e-6■■■■■ 50.1
SFSWAP-210ENST00000541286 SYNJ1O43426 1573 aa22.94■■□□□ 1.26
SFSWAP-210ENST00000541286 KIF21AQ7Z4S6 1674 aa22.93■■□□□ 1.26
SFSWAP-210ENST00000541286 ERCC6Q03468 1493 aa22.89■■□□□ 1.25
SFSWAP-210ENST00000541286 LAMC3Q9Y6N6 1575 aa22.88■■□□□ 1.25
SFSWAP-210ENST00000541286 CUX1P39880 1505 aa22.87■■□□□ 1.25
SFSWAP-210ENST00000541286 PDS5BQ9NTI5 1447 aa22.84■■□□□ 1.25
SFSWAP-210ENST00000541286 RUSC2Q8N2Y8 1516 aa22.84■■□□□ 1.25
SFSWAP-210ENST00000541286 CEP164Q9UPV0 1460 aa22.83■■□□□ 1.25
SFSWAP-210ENST00000541286 SOGA1O94964 1423 aa22.82■■□□□ 1.24
SFSWAP-210ENST00000541286 URB2Q14146 1524 aaKnown RBP22.79■■□□□ 1.24
SFSWAP-210ENST00000541286 RAD54L2Q9Y4B4 1467 aa22.75■■□□□ 1.23
SFSWAP-210ENST00000541286 PRDM2Q13029 1718 aa22.73■■□□□ 1.23
SFSWAP-210ENST00000541286 TOPBP1Q92547 1522 aa22.69■■□□□ 1.22
SFSWAP-210ENST00000541286 FGD5Q6ZNL6 1462 aa22.68■■□□□ 1.22
SFSWAP-210ENST00000541286 TOP2BQ02880 1626 aa22.64■■□□□ 1.22
SFSWAP-210ENST00000541286 TDRD9Q8NDG6 1382 aaKnown RBP22.62■■□□□ 1.21
SFSWAP-210ENST00000541286 POLA1P09884 1462 aaPredicted RBP22.61■■□□□ 1.21
SFSWAP-210ENST00000541286 RANGAP1P46060 587 aaPredicted RBP22.59■■□□□ 1.21
SFSWAP-210ENST00000541286 SCAF1Q9H7N4 1312 aaKnown RBP22.58■■□□□ 1.21
SFSWAP-210ENST00000541286 MRC2Q9UBG0 1479 aa22.58■■□□□ 1.21
SFSWAP-210ENST00000541286 DNMBPQ6XZF7 1577 aa22.55■■□□□ 1.2
SFSWAP-210ENST00000541286 TRIM26Q12899 539 aaPredicted RBP22.55■■□□□ 1.2
SFSWAP-210ENST00000541286 PELP1Q8IZL8 1130 aaKnown RBP22.55■■□□□ 1.2
SFSWAP-210ENST00000541286 BIVM-ERCC5R4GMW8 1640 aa22.54■■□□□ 1.2
SFSWAP-210ENST00000541286 CUX2O14529 1486 aa22.53■■□□□ 1.2
SFSWAP-210ENST00000541286 THOC2Q8NI27 1593 aaKnown RBP22.5■■□□□ 1.19
SFSWAP-210ENST00000541286 ZNF608Q9ULD9 1512 aaPredicted RBP22.49■■□□□ 1.19
SFSWAP-210ENST00000541286 AQRO60306 1485 aaKnown RBP eCLIP22.49■■□□□ 1.197e-7■■■■□ 22.4
SFSWAP-210ENST00000541286 CSRNP3Q8WYN3 585 aa22.45■■□□□ 1.18
SFSWAP-210ENST00000541286 WDR62O43379 1518 aa22.41■■□□□ 1.18
SFSWAP-210ENST00000541286 UBTFP17480 764 aaKnown RBP22.36■■□□□ 1.17
SFSWAP-210ENST00000541286 FBLN2P98095 1184 aa22.35■■□□□ 1.17
SFSWAP-210ENST00000541286 KIF27Q86VH2 1401 aa22.32■■□□□ 1.16
SFSWAP-210ENST00000541286 TARBP1Q13395 1621 aaKnown RBP22.31■■□□□ 1.16
SFSWAP-210ENST00000541286 IGF1RP08069 1367 aa22.3■■□□□ 1.16
SFSWAP-210ENST00000541286 RAPGEF2Q9Y4G8 1499 aa22.27■■□□□ 1.16
SFSWAP-210ENST00000541286 ABCA10Q8WWZ4 1543 aa22.27■■□□□ 1.16
SFSWAP-210ENST00000541286 GAPVD1Q14C86 1478 aa22.24■■□□□ 1.15
SFSWAP-210ENST00000541286 IFT140Q96RY7 1462 aa22.19■■□□□ 1.14
SFSWAP-210ENST00000541286 TTBK1Q5TCY1 1321 aaPredicted RBP22.19■■□□□ 1.14
SFSWAP-210ENST00000541286 CARMIL1Q5VZK9 1371 aa22.17■■□□□ 1.14
SFSWAP-210ENST00000541286 WDR97A6NE52 1622 aa22.17■■□□□ 1.14
SFSWAP-210ENST00000541286 EIF4G3O43432 1585 aaKnown RBP22.15■■□□□ 1.14
SFSWAP-210ENST00000541286 P3H3Q8IVL6 736 aa22.12■■□□□ 1.13
SFSWAP-210ENST00000541286 ABCA5Q8WWZ7 1642 aa22.11■■□□□ 1.13
SFSWAP-210ENST00000541286 SNAPC4Q5SXM2 1469 aa22.1■■□□□ 1.13
SFSWAP-210ENST00000541286 PRXQ9BXM0 1461 aa22.07■■□□□ 1.12
SFSWAP-210ENST00000541286 EEA1Q15075 1411 aa22.07■■□□□ 1.12
SFSWAP-210ENST00000541286 CHMP7Q8WUX9 453 aaPredicted RBP22.06■■□□□ 1.12
SFSWAP-210ENST00000541286 ZEB1P37275 1124 aaPredicted RBP22.03■■□□□ 1.12
SFSWAP-210ENST00000541286 PBRM1Q86U86 1689 aa22.02■■□□□ 1.12
SFSWAP-210ENST00000541286 GRIN2BQ13224 1484 aa22.02■■□□□ 1.12
SFSWAP-210ENST00000541286 GOLGA3Q08378 1498 aa22.02■■□□□ 1.11
SFSWAP-210ENST00000541286 NEUROD1Q13562 356 aa21.98■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms