RNA–Protein interactions for RNA: ENST00000524111.5

SREK1-215, Transcript of splicing regulatory glutamic acid and lysine rich protein 1, humanhuman

TSL 5

Gene SREK1, Length 4,074 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SREK1-215ENST00000524111 NISCHQ9Y2I1 1504 aa17.24■□□□□ 0.35
SREK1-215ENST00000524111 DCAF8L2P0C7V8 631 aa15.7■□□□□ 0.1
SREK1-215ENST00000524111 SHROOM4Q9ULL8 1493 aa15.58■□□□□ 0.08
SREK1-215ENST00000524111 SUPT5HO00267 1087 aaKnown RBP15.36■□□□□ 0.05
SREK1-215ENST00000524111 EHMT2Q96KQ7 1210 aa14.53□□□□□ -0.08
SREK1-215ENST00000524111 ZCCHC6Q5VYS8 1495 aaKnown RBP14.44□□□□□ -0.1
SREK1-215ENST00000524111 CHIC1Q5VXU3 224 aa14.37□□□□□ -0.11
SREK1-215ENST00000524111 FAM9AQ8IZU1 332 aaPredicted RBP14.35□□□□□ -0.11
SREK1-215ENST00000524111 CCDC180Q9P1Z9 1646 aa14.29□□□□□ -0.12
SREK1-215ENST00000524111 ABCC9O60706 1549 aa14.27□□□□□ -0.13
SREK1-215ENST00000524111 PCGF6Q9BYE7 350 aa14.24□□□□□ -0.13
SREK1-215ENST00000524111 LOC105371045A0A1W2PR82 267 aa14.23□□□□□ -0.13
SREK1-215ENST00000524111 TRIM41Q8WV44 630 aa14.12□□□□□ -0.15
SREK1-215ENST00000524111 SCRIBQ14160 1630 aa14.01□□□□□ -0.17
SREK1-215ENST00000524111 MYO15BQ96JP2 1530 aa14□□□□□ -0.17
SREK1-215ENST00000524111 TTBK1Q5TCY1 1321 aaPredicted RBP13.98□□□□□ -0.17
SREK1-215ENST00000524111 PPARGC1BQ86YN6 1023 aaKnown RBP13.95□□□□□ -0.18
SREK1-215ENST00000524111 PABPN1Q86U42 306 aaKnown RBP eCLIP13.92□□□□□ -0.18
SREK1-215ENST00000524111 RANGAP1P46060 587 aaPredicted RBP13.78□□□□□ -0.2
SREK1-215ENST00000524111 HRCP23327 699 aa13.77□□□□□ -0.2
SREK1-215ENST00000524111 RSF1Q96T23 1441 aaPredicted RBP13.76□□□□□ -0.21
SREK1-215ENST00000524111 DCAF1Q9Y4B6 1507 aa13.76□□□□□ -0.21
SREK1-215ENST00000524111 CECR2Q9BXF3 1484 aa13.69□□□□□ -0.22
SREK1-215ENST00000524111 TRIM26Q12899 539 aaPredicted RBP13.67□□□□□ -0.22
SREK1-215ENST00000524111 UBTFP17480 764 aaKnown RBP13.66□□□□□ -0.22
SREK1-215ENST00000524111 RB1CC1Q8TDY2 1594 aa13.54□□□□□ -0.24
SREK1-215ENST00000524111 NACADO15069 1562 aa13.52□□□□□ -0.25
SREK1-215ENST00000524111 MROH2BQ7Z745 1585 aa13.51□□□□□ -0.25
SREK1-215ENST00000524111 CCER1Q8TC90 406 aaPredicted RBP13.49□□□□□ -0.25
SREK1-215ENST00000524111 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.44□□□□□ -0.26
SREK1-215ENST00000524111 APLP2Q06481 763 aa13.42□□□□□ -0.26
SREK1-215ENST00000524111 WIZO95785 1651 aa13.37□□□□□ -0.27
SREK1-215ENST00000524111 ZEB1P37275 1124 aaPredicted RBP13.32□□□□□ -0.28
SREK1-215ENST00000524111 HNRNPUL2Q1KMD3 747 aaKnown RBP13.32□□□□□ -0.28
SREK1-215ENST00000524111 CSRNP3Q8WYN3 585 aa13.31□□□□□ -0.28
SREK1-215ENST00000524111 BAZ1AQ9NRL2 1556 aaPredicted RBP13.27□□□□□ -0.28
SREK1-215ENST00000524111 ATP1B4Q9UN42 357 aaPredicted RBP13.27□□□□□ -0.29
SREK1-215ENST00000524111 ABCC8Q09428 1581 aa13.25□□□□□ -0.29
SREK1-215ENST00000524111 CCDC88BA6NC98 1476 aa13.21□□□□□ -0.29
SREK1-215ENST00000524111 SOGA1O94964 1423 aa13.2□□□□□ -0.3
SREK1-215ENST00000524111 ITGAEP38570 1179 aa13.19□□□□□ -0.3
SREK1-215ENST00000524111 WRNQ14191 1432 aaPredicted RBP eCLIP13.1□□□□□ -0.31
SREK1-215ENST00000524111 CEP162Q5TB80 1403 aa13.09□□□□□ -0.31
SREK1-215ENST00000524111 SMARCA4P51532 1647 aa13.08□□□□□ -0.32
SREK1-215ENST00000524111 RUSC2Q8N2Y8 1516 aa13.08□□□□□ -0.32
SREK1-215ENST00000524111 BAZ1BQ9UIG0 1483 aaKnown RBP13.08□□□□□ -0.32
SREK1-215ENST00000524111 YTHDC1Q96MU7 727 aaKnown RBP13.07□□□□□ -0.32
SREK1-215ENST00000524111 TOP2AP11388 1531 aaKnown RBP13.06□□□□□ -0.32
SREK1-215ENST00000524111 P3H3Q8IVL6 736 aa13.03□□□□□ -0.32
SREK1-215ENST00000524111 SMARCA2P51531 1590 aa12.98□□□□□ -0.33
SREK1-215ENST00000524111 DIEXFQ68CQ4 756 aaKnown RBP12.97□□□□□ -0.33
SREK1-215ENST00000524111 CLIP1P30622 1438 aa12.96□□□□□ -0.34
SREK1-215ENST00000524111 TNIKQ9UKE5 1360 aa12.95□□□□□ -0.34
SREK1-215ENST00000524111 ATAD2BQ9ULI0 1458 aa12.95□□□□□ -0.34
SREK1-215ENST00000524111 GOLGA3Q08378 1498 aa12.93□□□□□ -0.34
SREK1-215ENST00000524111 FAM50AQ14320 339 aaKnown RBP12.88□□□□□ -0.35
SREK1-215ENST00000524111 EEA1Q15075 1411 aa12.88□□□□□ -0.35
SREK1-215ENST00000524111 BICRAQ9NZM4 1560 aa12.87□□□□□ -0.35
SREK1-215ENST00000524111 ARID3CA6NKF2 412 aa12.85□□□□□ -0.35
SREK1-215ENST00000524111 CEP164Q9UPV0 1460 aa12.84□□□□□ -0.35
SREK1-215ENST00000524111 CENPBP07199 599 aaPredicted RBP12.84□□□□□ -0.35
SREK1-215ENST00000524111 UNC13AQ9UPW8 1703 aa12.83□□□□□ -0.36
SREK1-215ENST00000524111 RAPGEF2Q9Y4G8 1499 aa12.81□□□□□ -0.36
SREK1-215ENST00000524111 ZNF316A6NFI3 1004 aaPredicted RBP12.78□□□□□ -0.36
SREK1-215ENST00000524111 NEUROD1Q13562 356 aa12.78□□□□□ -0.36
SREK1-215ENST00000524111 KANK4Q5T7N3 995 aaPredicted RBP12.78□□□□□ -0.36
SREK1-215ENST00000524111 SYNJ1O43426 1573 aa12.75□□□□□ -0.37
SREK1-215ENST00000524111 KIF27Q86VH2 1401 aa12.74□□□□□ -0.37
SREK1-215ENST00000524111 CUX2O14529 1486 aa12.71□□□□□ -0.37
SREK1-215ENST00000524111 VPS8Q8N3P4 1428 aa12.7□□□□□ -0.38
SREK1-215ENST00000524111 GTF3C3Q9Y5Q9 886 aa12.68□□□□□ -0.38
SREK1-215ENST00000524111 SCAF1Q9H7N4 1312 aaKnown RBP12.68□□□□□ -0.38
SREK1-215ENST00000524111 FBLN2P98095 1184 aa12.67□□□□□ -0.38
SREK1-215ENST00000524111 EIF4G1Q04637 1599 aaKnown RBP12.66□□□□□ -0.38
SREK1-215ENST00000524111 MIER1Q8N108 512 aa12.65□□□□□ -0.38
SREK1-215ENST00000524111 ACIN1Q9UKV3 1341 aaKnown RBP12.63□□□□□ -0.39
SREK1-215ENST00000524111 CARMIL1Q5VZK9 1371 aa12.63□□□□□ -0.39
SREK1-215ENST00000524111 CADPSQ9ULU8 1353 aa12.62□□□□□ -0.39
SREK1-215ENST00000524111 DNAJC5BQ9UF47 199 aa12.62□□□□□ -0.39
SREK1-215ENST00000524111 HIRIP3Q9BW71 556 aaPredicted RBP12.61□□□□□ -0.39
SREK1-215ENST00000524111 NCAPD3P42695 1498 aa12.61□□□□□ -0.39
SREK1-215ENST00000524111 CNGB1Q14028 1251 aaPredicted RBP12.6□□□□□ -0.39
SREK1-215ENST00000524111 TDRD9Q8NDG6 1382 aaKnown RBP12.59□□□□□ -0.39
SREK1-215ENST00000524111 CHIC2Q9UKJ5 165 aa12.58□□□□□ -0.4
SREK1-215ENST00000524111 TRIM52Q96A61 297 aa12.57□□□□□ -0.4
SREK1-215ENST00000524111 CUX1P39880 1505 aa12.54□□□□□ -0.4
SREK1-215ENST00000524111 SIN3AQ96ST3 1273 aa12.53□□□□□ -0.4
SREK1-215ENST00000524111 IGF1RP08069 1367 aa12.53□□□□□ -0.4
SREK1-215ENST00000524111 KIF21BO75037 1637 aa12.53□□□□□ -0.4
SREK1-215ENST00000524111 PEG3Q9GZU2 1588 aa12.52□□□□□ -0.4
SREK1-215ENST00000524111 CCNB3Q8WWL7 1395 aa12.52□□□□□ -0.41
SREK1-215ENST00000524111 RAD54L2Q9Y4B4 1467 aa12.51□□□□□ -0.41
SREK1-215ENST00000524111 NESP48681 1621 aa12.51□□□□□ -0.41
SREK1-215ENST00000524111 CFTRP13569 1480 aa12.51□□□□□ -0.41
SREK1-215ENST00000524111 MTUS2Q5JR59 1369 aa12.5□□□□□ -0.41
SREK1-215ENST00000524111 ARAP1Q96P48 1450 aa12.5□□□□□ -0.41
SREK1-215ENST00000524111 POLR3GLQ9BT43 218 aa12.5□□□□□ -0.41
SREK1-215ENST00000524111 FGD5Q6ZNL6 1462 aa12.5□□□□□ -0.41
SREK1-215ENST00000524111 FANCD2Q9BXW9 1451 aa12.49□□□□□ -0.41
SREK1-215ENST00000524111 DDX10Q13206 875 aaKnown RBP12.48□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 53 ms