RNA–Protein interactions for RNA: ENST00000520953.5

SREK1-209, Transcript of splicing regulatory glutamic acid and lysine rich protein 1, humanhuman

TSL 5

Gene SREK1, Length 2,172 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SREK1-209ENST00000520953 NISCHQ9Y2I1 1504 aa35.01■■■■□ 3.2
SREK1-209ENST00000520953 CCDC180Q9P1Z9 1646 aa30.64■■■□□ 2.5
SREK1-209ENST00000520953 ABCC9O60706 1549 aa29.47■■■□□ 2.31
SREK1-209ENST00000520953 ZCCHC6Q5VYS8 1495 aaKnown RBP29.33■■■□□ 2.29
SREK1-209ENST00000520953 DCAF8L2P0C7V8 631 aa29.12■■■□□ 2.25
SREK1-209ENST00000520953 DCAF1Q9Y4B6 1507 aa28.86■■■□□ 2.21
SREK1-209ENST00000520953 MYO15BQ96JP2 1530 aa28.63■■■□□ 2.17
SREK1-209ENST00000520953 NACADO15069 1562 aa28.62■■■□□ 2.17
SREK1-209ENST00000520953 RB1CC1Q8TDY2 1594 aa28.48■■■□□ 2.15
SREK1-209ENST00000520953 SHROOM4Q9ULL8 1493 aa28.44■■■□□ 2.14
SREK1-209ENST00000520953 SCRIBQ14160 1630 aa28.25■■■□□ 2.11
SREK1-209ENST00000520953 UNC13AQ9UPW8 1703 aa28■■■□□ 2.07
SREK1-209ENST00000520953 PABPN1Q86U42 306 aaKnown RBP eCLIP27.75■■■□□ 2.032e-9■□□□□ 8.9
SREK1-209ENST00000520953 BICRAQ9NZM4 1560 aa27.74■■■□□ 2.03
SREK1-209ENST00000520953 CECR2Q9BXF3 1484 aa27.33■■□□□ 1.97
SREK1-209ENST00000520953 SUPT5HO00267 1087 aaKnown RBP27.12■■□□□ 1.93
SREK1-209ENST00000520953 MROH2BQ7Z745 1585 aa27.1■■□□□ 1.93
SREK1-209ENST00000520953 RSF1Q96T23 1441 aaPredicted RBP27.04■■□□□ 1.92
SREK1-209ENST00000520953 BAZ1AQ9NRL2 1556 aaPredicted RBP27.02■■□□□ 1.92
SREK1-209ENST00000520953 SMARCA4P51532 1647 aa27■■□□□ 1.91
SREK1-209ENST00000520953 EIF4G1Q04637 1599 aaKnown RBP26.9■■□□□ 1.9
SREK1-209ENST00000520953 WIZO95785 1651 aa26.86■■□□□ 1.89
SREK1-209ENST00000520953 ATAD2BQ9ULI0 1458 aa26.66■■□□□ 1.86
SREK1-209ENST00000520953 PEG3Q9GZU2 1588 aa26.64■■□□□ 1.85
SREK1-209ENST00000520953 CC2D2AQ9P2K1 1620 aa26.62■■□□□ 1.85
SREK1-209ENST00000520953 SMARCA2P51531 1590 aa26.57■■□□□ 1.84
SREK1-209ENST00000520953 TOP2AP11388 1531 aaKnown RBP26.5■■□□□ 1.83
SREK1-209ENST00000520953 BAZ1BQ9UIG0 1483 aaKnown RBP26.47■■□□□ 1.83
SREK1-209ENST00000520953 NCAPD3P42695 1498 aa26.45■■□□□ 1.82
SREK1-209ENST00000520953 DNAJC5BQ9UF47 199 aa26.41■■□□□ 1.82
SREK1-209ENST00000520953 HMGXB3Q12766 1538 aa26.37■■□□□ 1.81
SREK1-209ENST00000520953 CCDC88BA6NC98 1476 aa26.26■■□□□ 1.79
SREK1-209ENST00000520953 NESP48681 1621 aa25.78■■□□□ 1.72
SREK1-209ENST00000520953 CFTRP13569 1480 aa25.78■■□□□ 1.72
SREK1-209ENST00000520953 CADPSQ9ULU8 1353 aa25.76■■□□□ 1.71
SREK1-209ENST00000520953 CHIC1Q5VXU3 224 aa25.72■■□□□ 1.71
SREK1-209ENST00000520953 ABCC8Q09428 1581 aa25.65■■□□□ 1.7
SREK1-209ENST00000520953 LAMC3Q9Y6N6 1575 aa25.6■■□□□ 1.69
SREK1-209ENST00000520953 PRDM2Q13029 1718 aa25.59■■□□□ 1.69
SREK1-209ENST00000520953 FANCD2Q9BXW9 1451 aa25.5■■□□□ 1.67
SREK1-209ENST00000520953 TRIM41Q8WV44 630 aa25.45■■□□□ 1.66
SREK1-209ENST00000520953 WRNQ14191 1432 aaPredicted RBP eCLIP25.43■■□□□ 1.66
SREK1-209ENST00000520953 KIF21AQ7Z4S6 1674 aa25.42■■□□□ 1.66
SREK1-209ENST00000520953 SYNJ1O43426 1573 aa25.41■■□□□ 1.66
SREK1-209ENST00000520953 PDS5BQ9NTI5 1447 aa25.4■■□□□ 1.66
SREK1-209ENST00000520953 CEP164Q9UPV0 1460 aa25.36■■□□□ 1.65
SREK1-209ENST00000520953 CUX1P39880 1505 aa25.35■■□□□ 1.65
SREK1-209ENST00000520953 TOP2BQ02880 1626 aa25.26■■□□□ 1.64
SREK1-209ENST00000520953 URB2Q14146 1524 aaKnown RBP25.25■■□□□ 1.63
SREK1-209ENST00000520953 BIVM-ERCC5R4GMW8 1640 aa25.24■■□□□ 1.63
SREK1-209ENST00000520953 ERCC6Q03468 1493 aa25.23■■□□□ 1.63
SREK1-209ENST00000520953 TOPBP1Q92547 1522 aa25.19■■□□□ 1.62
SREK1-209ENST00000520953 DNMBPQ6XZF7 1577 aa25.18■■□□□ 1.62
SREK1-209ENST00000520953 MRC2Q9UBG0 1479 aa25.14■■□□□ 1.61
SREK1-209ENST00000520953 FGD5Q6ZNL6 1462 aa25.12■■□□□ 1.61
SREK1-209ENST00000520953 FAM9AQ8IZU1 332 aaPredicted RBP25.08■■□□□ 1.61
SREK1-209ENST00000520953 THOC2Q8NI27 1593 aaKnown RBP25.08■■□□□ 1.61
SREK1-209ENST00000520953 SOGA1O94964 1423 aa25.08■■□□□ 1.6
SREK1-209ENST00000520953 POLA1P09884 1462 aaPredicted RBP25.05■■□□□ 1.6
SREK1-209ENST00000520953 RUSC2Q8N2Y8 1516 aa25.04■■□□□ 1.6
SREK1-209ENST00000520953 WDR62O43379 1518 aa25.03■■□□□ 1.6
SREK1-209ENST00000520953 RAD54L2Q9Y4B4 1467 aa25.02■■□□□ 1.6
SREK1-209ENST00000520953 CUX2O14529 1486 aa24.92■■□□□ 1.58
SREK1-209ENST00000520953 TARBP1Q13395 1621 aaKnown RBP24.86■■□□□ 1.57
SREK1-209ENST00000520953 ABCA10Q8WWZ4 1543 aa24.83■■□□□ 1.57
SREK1-209ENST00000520953 WDR97A6NE52 1622 aa24.83■■□□□ 1.57
SREK1-209ENST00000520953 EHMT2Q96KQ7 1210 aa24.83■■□□□ 1.56
SREK1-209ENST00000520953 LOC105371045A0A1W2PR82 267 aa24.8■■□□□ 1.56
SREK1-209ENST00000520953 KIF27Q86VH2 1401 aa24.79■■□□□ 1.56
SREK1-209ENST00000520953 TDRD9Q8NDG6 1382 aaKnown RBP24.79■■□□□ 1.56
SREK1-209ENST00000520953 CSRNP3Q8WYN3 585 aa24.76■■□□□ 1.55
SREK1-209ENST00000520953 EEA1Q15075 1411 aa24.76■■□□□ 1.55
SREK1-209ENST00000520953 ZNF608Q9ULD9 1512 aaPredicted RBP24.75■■□□□ 1.55
SREK1-209ENST00000520953 IFT140Q96RY7 1462 aa24.75■■□□□ 1.55
SREK1-209ENST00000520953 AQRO60306 1485 aaKnown RBP eCLIP24.7■■□□□ 1.556e-7■□□□□ 10.4
SREK1-209ENST00000520953 ABCA5Q8WWZ7 1642 aa24.69■■□□□ 1.54
SREK1-209ENST00000520953 IGF1RP08069 1367 aa24.67■■□□□ 1.54
SREK1-209ENST00000520953 GAPVD1Q14C86 1478 aa24.65■■□□□ 1.54
SREK1-209ENST00000520953 EIF4G3O43432 1585 aaKnown RBP24.61■■□□□ 1.53
SREK1-209ENST00000520953 PRXQ9BXM0 1461 aa24.57■■□□□ 1.52
SREK1-209ENST00000520953 RAPGEF2Q9Y4G8 1499 aa24.57■■□□□ 1.52
SREK1-209ENST00000520953 PBRM1Q86U86 1689 aa24.56■■□□□ 1.52
SREK1-209ENST00000520953 KIF21BO75037 1637 aa24.54■■□□□ 1.52
SREK1-209ENST00000520953 ERICH3Q5RHP9 1530 aa24.52■■□□□ 1.52
SREK1-209ENST00000520953 CARMIL1Q5VZK9 1371 aa24.51■■□□□ 1.51
SREK1-209ENST00000520953 GRIN2BQ13224 1484 aa24.49■■□□□ 1.51
SREK1-209ENST00000520953 GOLGA3Q08378 1498 aa24.48■■□□□ 1.51
SREK1-209ENST00000520953 CUL7Q14999 1698 aa24.44■■□□□ 1.5
SREK1-209ENST00000520953 SNAPC4Q5SXM2 1469 aa24.44■■□□□ 1.5
SREK1-209ENST00000520953 UBTFP17480 764 aaKnown RBP24.43■■□□□ 1.5
SREK1-209ENST00000520953 ADAMTS12P58397 1594 aa24.4■■□□□ 1.5
SREK1-209ENST00000520953 FHAD1B1AJZ9 1412 aa24.35■■□□□ 1.49
SREK1-209ENST00000520953 TNIKQ9UKE5 1360 aa24.32■■□□□ 1.48
SREK1-209ENST00000520953 MAGI1Q96QZ7 1491 aaPredicted RBP24.31■■□□□ 1.48
SREK1-209ENST00000520953 RANGAP1P46060 587 aaPredicted RBP24.28■■□□□ 1.48
SREK1-209ENST00000520953 FBLN2P98095 1184 aa24.26■■□□□ 1.47
SREK1-209ENST00000520953 SYNJ2O15056 1496 aa24.25■■□□□ 1.47
SREK1-209ENST00000520953 GRIN2AQ12879 1464 aa24.23■■□□□ 1.47
SREK1-209ENST00000520953 CHMP7Q8WUX9 453 aaPredicted RBP24.22■■□□□ 1.47
SREK1-209ENST00000520953 CEP162Q5TB80 1403 aa24.22■■□□□ 1.47
Retrieved 100 of 20,778 RNA–protein pairs in 142.2 ms