Protein–RNA interactions for Protein: Q6P9F5

TRIM40, Tripartite motif-containing protein 40, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM40Q6P9F5 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC21.06■□□□□ 0.96
TRIM40Q6P9F5 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
TRIM40Q6P9F5 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
TRIM40Q6P9F5 PTCHD3P2-201ENST00000424937 1205 ntBASIC21.05■□□□□ 0.96
TRIM40Q6P9F5 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC21.05■□□□□ 0.96
TRIM40Q6P9F5 MIR3181-201ENST00000578512 73 ntBASIC21.05■□□□□ 0.96
TRIM40Q6P9F5 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC21.05■□□□□ 0.96
TRIM40Q6P9F5 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
TRIM40Q6P9F5 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
TRIM40Q6P9F5 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC21.05■□□□□ 0.96
TRIM40Q6P9F5 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
TRIM40Q6P9F5 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC21.05■□□□□ 0.96
TRIM40Q6P9F5 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
TRIM40Q6P9F5 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
TRIM40Q6P9F5 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
TRIM40Q6P9F5 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
TRIM40Q6P9F5 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
TRIM40Q6P9F5 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC21.04■□□□□ 0.96
TRIM40Q6P9F5 AC133637.1-201ENST00000624115 1537 ntBASIC21.04■□□□□ 0.96
TRIM40Q6P9F5 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
TRIM40Q6P9F5 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
TRIM40Q6P9F5 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
TRIM40Q6P9F5 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
TRIM40Q6P9F5 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
TRIM40Q6P9F5 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC21.04■□□□□ 0.96
TRIM40Q6P9F5 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC21.04■□□□□ 0.96
TRIM40Q6P9F5 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC21.04■□□□□ 0.96
TRIM40Q6P9F5 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC21.04■□□□□ 0.96
TRIM40Q6P9F5 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC21.04■□□□□ 0.96
TRIM40Q6P9F5 AL138724.1-201ENST00000606771 1088 ntBASIC21.04■□□□□ 0.96
TRIM40Q6P9F5 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC21.04■□□□□ 0.96
TRIM40Q6P9F5 SF1-220ENST00000626028 704 ntTSL 2 BASIC21.04■□□□□ 0.96
TRIM40Q6P9F5 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
TRIM40Q6P9F5 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC21.04■□□□□ 0.96
TRIM40Q6P9F5 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
TRIM40Q6P9F5 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
TRIM40Q6P9F5 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
TRIM40Q6P9F5 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
TRIM40Q6P9F5 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
TRIM40Q6P9F5 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC21.03■□□□□ 0.96
TRIM40Q6P9F5 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC21.03■□□□□ 0.96
TRIM40Q6P9F5 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
TRIM40Q6P9F5 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC21.03■□□□□ 0.96
TRIM40Q6P9F5 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC21.03■□□□□ 0.96
TRIM40Q6P9F5 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
TRIM40Q6P9F5 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
TRIM40Q6P9F5 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC21.02■□□□□ 0.96
TRIM40Q6P9F5 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
TRIM40Q6P9F5 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC21.02■□□□□ 0.96
TRIM40Q6P9F5 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
TRIM40Q6P9F5 SERBP1P1-201ENST00000396021 1160 ntBASIC21.02■□□□□ 0.96
TRIM40Q6P9F5 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC21.02■□□□□ 0.96
TRIM40Q6P9F5 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC21.02■□□□□ 0.96
TRIM40Q6P9F5 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
TRIM40Q6P9F5 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC21.02■□□□□ 0.95
TRIM40Q6P9F5 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
TRIM40Q6P9F5 GUSBP5-202ENST00000510805 1989 ntBASIC21.01■□□□□ 0.95
TRIM40Q6P9F5 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC21.01■□□□□ 0.95
TRIM40Q6P9F5 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
TRIM40Q6P9F5 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC21.01■□□□□ 0.95
TRIM40Q6P9F5 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC21.01■□□□□ 0.95
TRIM40Q6P9F5 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
TRIM40Q6P9F5 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
TRIM40Q6P9F5 HES6-206ENST00000409574 738 ntTSL 2 BASIC21.01■□□□□ 0.95
TRIM40Q6P9F5 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC21.01■□□□□ 0.95
TRIM40Q6P9F5 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC21.01■□□□□ 0.95
TRIM40Q6P9F5 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC21.01■□□□□ 0.95
TRIM40Q6P9F5 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
TRIM40Q6P9F5 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
TRIM40Q6P9F5 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC21.01■□□□□ 0.95
TRIM40Q6P9F5 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
TRIM40Q6P9F5 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC21■□□□□ 0.95
TRIM40Q6P9F5 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC21■□□□□ 0.95
TRIM40Q6P9F5 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
TRIM40Q6P9F5 ESRRAP2-201ENST00000418437 1549 ntBASIC21■□□□□ 0.95
TRIM40Q6P9F5 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC21■□□□□ 0.95
TRIM40Q6P9F5 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC21■□□□□ 0.95
TRIM40Q6P9F5 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC21■□□□□ 0.95
TRIM40Q6P9F5 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
TRIM40Q6P9F5 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC21■□□□□ 0.95
TRIM40Q6P9F5 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC21■□□□□ 0.95
TRIM40Q6P9F5 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC21■□□□□ 0.95
TRIM40Q6P9F5 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
TRIM40Q6P9F5 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC21■□□□□ 0.95
TRIM40Q6P9F5 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
TRIM40Q6P9F5 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
TRIM40Q6P9F5 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC21■□□□□ 0.95
TRIM40Q6P9F5 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC21■□□□□ 0.95
TRIM40Q6P9F5 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
TRIM40Q6P9F5 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC20.99■□□□□ 0.95
TRIM40Q6P9F5 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC20.99■□□□□ 0.95
TRIM40Q6P9F5 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
TRIM40Q6P9F5 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC20.99■□□□□ 0.95
TRIM40Q6P9F5 AC011298.3-201ENST00000615796 283 ntBASIC20.99■□□□□ 0.95
TRIM40Q6P9F5 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC20.99■□□□□ 0.95
TRIM40Q6P9F5 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC20.99■□□□□ 0.95
TRIM40Q6P9F5 COMT-203ENST00000403184 2217 ntTSL 2 BASIC20.98■□□□□ 0.95
TRIM40Q6P9F5 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
TRIM40Q6P9F5 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
TRIM40Q6P9F5 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 52.7 ms