RNA–Protein interactions for RNA: ENST00000354098.7

SHMT1-203, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best) BASIC

Gene SHMT1, Length 1,656 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-203ENST00000354098 NISCHQ9Y2I1 1504 aa52.9■■■■■ 6.06
SHMT1-203ENST00000354098 CCDC180Q9P1Z9 1646 aa46.72■■■■■ 5.07
SHMT1-203ENST00000354098 ABCC9O60706 1549 aa45.37■■■■■ 4.85
SHMT1-203ENST00000354098 ZCCHC6Q5VYS8 1495 aaKnown RBP44.16■■■■■ 4.66
SHMT1-203ENST00000354098 DCAF8L2P0C7V8 631 aa44.12■■■■■ 4.65
SHMT1-203ENST00000354098 NACADO15069 1562 aa43.82■■■■■ 4.61
SHMT1-203ENST00000354098 RB1CC1Q8TDY2 1594 aa43.76■■■■■ 4.6
SHMT1-203ENST00000354098 DCAF1Q9Y4B6 1507 aa43.72■■■■■ 4.59
SHMT1-203ENST00000354098 MYO15BQ96JP2 1530 aa43.7■■■■■ 4.59
SHMT1-203ENST00000354098 UNC13AQ9UPW8 1703 aa42.8■■■■■ 4.44
SHMT1-203ENST00000354098 SCRIBQ14160 1630 aa42.78■■■■■ 4.44
SHMT1-203ENST00000354098 PABPN1Q86U42 306 aaKnown RBP eCLIP42.54■■■■■ 4.4
SHMT1-203ENST00000354098 BICRAQ9NZM4 1560 aa42.49■■■■■ 4.39
SHMT1-203ENST00000354098 SHROOM4Q9ULL8 1493 aa42.23■■■■■ 4.35
SHMT1-203ENST00000354098 EIF4G1Q04637 1599 aaKnown RBP41.3■■■■■ 4.2
SHMT1-203ENST00000354098 DNAJC5BQ9UF47 199 aa41.26■■■■■ 4.2
SHMT1-203ENST00000354098 CECR2Q9BXF3 1484 aa41.23■■■■■ 4.19
SHMT1-203ENST00000354098 CC2D2AQ9P2K1 1620 aa41.02■■■■■ 4.16
SHMT1-203ENST00000354098 BAZ1AQ9NRL2 1556 aaPredicted RBP40.93■■■■■ 4.14
SHMT1-203ENST00000354098 SMARCA4P51532 1647 aa40.93■■■■■ 4.14
SHMT1-203ENST00000354098 MROH2BQ7Z745 1585 aa40.82■■■■■ 4.13
SHMT1-203ENST00000354098 ATAD2BQ9ULI0 1458 aa40.6■■■■■ 4.09
SHMT1-203ENST00000354098 RSF1Q96T23 1441 aaPredicted RBP40.54■■■■■ 4.08
SHMT1-203ENST00000354098 SMARCA2P51531 1590 aa40.52■■■■■ 4.08
SHMT1-203ENST00000354098 PEG3Q9GZU2 1588 aa40.48■■■■■ 4.07
SHMT1-203ENST00000354098 NCAPD3P42695 1498 aa40.48■■■■■ 4.07
SHMT1-203ENST00000354098 WIZO95785 1651 aa40.41■■■■■ 4.06
SHMT1-203ENST00000354098 HMGXB3Q12766 1538 aa40.28■■■■■ 4.04
SHMT1-203ENST00000354098 BAZ1BQ9UIG0 1483 aaKnown RBP40.28■■■■■ 4.04
SHMT1-203ENST00000354098 SUPT5HO00267 1087 aaKnown RBP39.99■■■■□ 3.99
SHMT1-203ENST00000354098 TOP2AP11388 1531 aaKnown RBP39.95■■■■□ 3.99
SHMT1-203ENST00000354098 CCDC88BA6NC98 1476 aa39.54■■■■□ 3.92
SHMT1-203ENST00000354098 NESP48681 1621 aa39.43■■■■□ 3.9
SHMT1-203ENST00000354098 CADPSQ9ULU8 1353 aa39.34■■■■□ 3.89
SHMT1-203ENST00000354098 LAMC3Q9Y6N6 1575 aa39.29■■■■□ 3.88
SHMT1-203ENST00000354098 CFTRP13569 1480 aa39.21■■■■□ 3.87
SHMT1-203ENST00000354098 PDS5BQ9NTI5 1447 aa39.03■■■■□ 3.84
SHMT1-203ENST00000354098 ERCC6Q03468 1493 aa39.01■■■■□ 3.84
SHMT1-203ENST00000354098 KIF21AQ7Z4S6 1674 aa38.91■■■■□ 3.82
SHMT1-203ENST00000354098 FANCD2Q9BXW9 1451 aa38.89■■■■□ 3.82
SHMT1-203ENST00000354098 PRDM2Q13029 1718 aa38.87■■■■□ 3.81
SHMT1-203ENST00000354098 CEP164Q9UPV0 1460 aa38.77■■■■□ 3.8
SHMT1-203ENST00000354098 THOC2Q8NI27 1593 aaKnown RBP38.64■■■■□ 3.78
SHMT1-203ENST00000354098 MRC2Q9UBG0 1479 aa38.61■■■■□ 3.77
SHMT1-203ENST00000354098 URB2Q14146 1524 aaKnown RBP38.5■■■■□ 3.75
SHMT1-203ENST00000354098 WDR62O43379 1518 aa38.46■■■■□ 3.75
SHMT1-203ENST00000354098 CUX2O14529 1486 aa38.35■■■■□ 3.73
SHMT1-203ENST00000354098 TOPBP1Q92547 1522 aa38.33■■■■□ 3.73
SHMT1-203ENST00000354098 DNMBPQ6XZF7 1577 aa38.3■■■■□ 3.72
SHMT1-203ENST00000354098 ABCC8Q09428 1581 aa38.28■■■■□ 3.72
SHMT1-203ENST00000354098 CUX1P39880 1505 aa38.25■■■■□ 3.71
SHMT1-203ENST00000354098 WRNQ14191 1432 aaPredicted RBP eCLIP38.19■■■■□ 3.7
SHMT1-203ENST00000354098 SYNJ1O43426 1573 aa38.08■■■■□ 3.69
SHMT1-203ENST00000354098 POLA1P09884 1462 aaPredicted RBP38.05■■■■□ 3.68
SHMT1-203ENST00000354098 FGD5Q6ZNL6 1462 aa38.04■■■■□ 3.68
SHMT1-203ENST00000354098 TOP2BQ02880 1626 aa38.02■■■■□ 3.68
SHMT1-203ENST00000354098 BIVM-ERCC5R4GMW8 1640 aa38■■■■□ 3.67
SHMT1-203ENST00000354098 IFT140Q96RY7 1462 aa37.93■■■■□ 3.66
SHMT1-203ENST00000354098 RAD54L2Q9Y4B4 1467 aa37.93■■■■□ 3.66
SHMT1-203ENST00000354098 SOGA1O94964 1423 aa37.92■■■■□ 3.66
SHMT1-203ENST00000354098 TARBP1Q13395 1621 aaKnown RBP37.87■■■■□ 3.65
SHMT1-203ENST00000354098 ZNF608Q9ULD9 1512 aaPredicted RBP37.8■■■■□ 3.64
SHMT1-203ENST00000354098 TRIM41Q8WV44 630 aa37.69■■■■□ 3.62
SHMT1-203ENST00000354098 TDRD9Q8NDG6 1382 aaKnown RBP37.68■■■■□ 3.62
SHMT1-203ENST00000354098 ABCA10Q8WWZ4 1543 aa37.66■■■■□ 3.62
SHMT1-203ENST00000354098 AQRO60306 1485 aaKnown RBP eCLIP37.66■■■■□ 3.62
SHMT1-203ENST00000354098 WDR97A6NE52 1622 aa37.65■■■■□ 3.62
SHMT1-203ENST00000354098 EIF4G3O43432 1585 aaKnown RBP37.61■■■■□ 3.61
SHMT1-203ENST00000354098 CHIC1Q5VXU3 224 aa37.6■■■■□ 3.61
SHMT1-203ENST00000354098 GAPVD1Q14C86 1478 aa37.47■■■■□ 3.59
SHMT1-203ENST00000354098 ABCA5Q8WWZ7 1642 aa37.46■■■■□ 3.59
SHMT1-203ENST00000354098 GRIN2BQ13224 1484 aa37.37■■■■□ 3.57
SHMT1-203ENST00000354098 KIF27Q86VH2 1401 aa37.33■■■■□ 3.57
SHMT1-203ENST00000354098 PBRM1Q86U86 1689 aa37.32■■■■□ 3.56
SHMT1-203ENST00000354098 SNAPC4Q5SXM2 1469 aa37.27■■■■□ 3.56
SHMT1-203ENST00000354098 RUSC2Q8N2Y8 1516 aa37.26■■■■□ 3.56
SHMT1-203ENST00000354098 ERICH3Q5RHP9 1530 aa37.2■■■■□ 3.55
SHMT1-203ENST00000354098 MAGI1Q96QZ7 1491 aaPredicted RBP37.19■■■■□ 3.54
SHMT1-203ENST00000354098 IGF1RP08069 1367 aa37.16■■■■□ 3.54
SHMT1-203ENST00000354098 FBLN2P98095 1184 aa37.12■■■■□ 3.53
SHMT1-203ENST00000354098 ADAMTS12P58397 1594 aa37.06■■■■□ 3.52
SHMT1-203ENST00000354098 SYNJ2O15056 1496 aa37.06■■■■□ 3.52
SHMT1-203ENST00000354098 CHMP7Q8WUX9 453 aaPredicted RBP37.05■■■■□ 3.52
SHMT1-203ENST00000354098 CHD1O14646 1710 aa37.03■■■■□ 3.52
SHMT1-203ENST00000354098 FHAD1B1AJZ9 1412 aa37.03■■■■□ 3.52
SHMT1-203ENST00000354098 FAM9AQ8IZU1 332 aaPredicted RBP36.97■■■■□ 3.51
SHMT1-203ENST00000354098 OSCARQ8IYS5 282 aa36.94■■■■□ 3.5
SHMT1-203ENST00000354098 CUL7Q14999 1698 aa36.94■■■■□ 3.5
SHMT1-203ENST00000354098 CARMIL1Q5VZK9 1371 aa36.94■■■■□ 3.5
SHMT1-203ENST00000354098 EEA1Q15075 1411 aa36.91■■■■□ 3.5
SHMT1-203ENST00000354098 GRIN2AQ12879 1464 aa36.9■■■■□ 3.5
SHMT1-203ENST00000354098 CSRNP3Q8WYN3 585 aa36.89■■■■□ 3.5
SHMT1-203ENST00000354098 PRXQ9BXM0 1461 aa36.76■■■■□ 3.48
SHMT1-203ENST00000354098 RAPGEF2Q9Y4G8 1499 aa36.75■■■■□ 3.47
SHMT1-203ENST00000354098 CEP170Q5SW79 1584 aa36.72■■■■□ 3.47
SHMT1-203ENST00000354098 NUP160Q12769 1436 aa36.71■■■■□ 3.47
SHMT1-203ENST00000354098 DNAJC5Q9H3Z4 198 aa36.67■■■■□ 3.46
SHMT1-203ENST00000354098 CLASP1Q7Z460 1538 aa36.64■■■■□ 3.46
SHMT1-203ENST00000354098 KIF21BO75037 1637 aa36.51■■■■□ 3.44
SHMT1-203ENST00000354098 EHMT2Q96KQ7 1210 aa36.51■■■■□ 3.43
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms