RNA–Protein interactions for RNA: ENST00000316694.7

SHMT1-201, Transcript of serine hydroxymethyltransferase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHMT1, Length 2,464 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-201ENST00000316694 NISCHQ9Y2I1 1504 aa45.21■■■■■ 4.83
SHMT1-201ENST00000316694 SHROOM4Q9ULL8 1493 aa38.66■■■■□ 3.78
SHMT1-201ENST00000316694 CCDC180Q9P1Z9 1646 aa38.44■■■■□ 3.74
SHMT1-201ENST00000316694 ZCCHC6Q5VYS8 1495 aaKnown RBP38.19■■■■□ 3.7
SHMT1-201ENST00000316694 SUPT5HO00267 1087 aaKnown RBP38.01■■■■□ 3.67
SHMT1-201ENST00000316694 DCAF8L2P0C7V8 631 aa37.64■■■■□ 3.62
SHMT1-201ENST00000316694 DCAF1Q9Y4B6 1507 aa37.03■■■■□ 3.52
SHMT1-201ENST00000316694 CHIC1Q5VXU3 224 aa36.97■■■■□ 3.51
SHMT1-201ENST00000316694 MYO15BQ96JP2 1530 aa36.9■■■■□ 3.5
SHMT1-201ENST00000316694 HRCP23327 699 aa36.2■■■■□ 3.39
SHMT1-201ENST00000316694 PCGF6Q9BYE7 350 aa36.12■■■■□ 3.37
SHMT1-201ENST00000316694 SCRIBQ14160 1630 aa36.09■■■■□ 3.37
SHMT1-201ENST00000316694 ABCC9O60706 1549 aa36.01■■■■□ 3.35
SHMT1-201ENST00000316694 LOC105371045A0A1W2PR82 267 aa35.95■■■■□ 3.35
SHMT1-201ENST00000316694 RSF1Q96T23 1441 aaPredicted RBP35.74■■■■□ 3.31
SHMT1-201ENST00000316694 NACADO15069 1562 aa35.59■■■■□ 3.29
SHMT1-201ENST00000316694 PPARGC1BQ86YN6 1023 aaKnown RBP35.48■■■■□ 3.27
SHMT1-201ENST00000316694 RB1CC1Q8TDY2 1594 aa35.39■■■■□ 3.26
SHMT1-201ENST00000316694 TRIM41Q8WV44 630 aa35.35■■■■□ 3.25
SHMT1-201ENST00000316694 TRIM26Q12899 539 aaPredicted RBP35.33■■■■□ 3.25
SHMT1-201ENST00000316694 CECR2Q9BXF3 1484 aa35.32■■■■□ 3.24
SHMT1-201ENST00000316694 MROH2BQ7Z745 1585 aa35.17■■■■□ 3.22
SHMT1-201ENST00000316694 FAM9AQ8IZU1 332 aaPredicted RBP35.13■■■■□ 3.21
SHMT1-201ENST00000316694 WIZO95785 1651 aa34.99■■■■□ 3.19
SHMT1-201ENST00000316694 EHMT2Q96KQ7 1210 aa34.89■■■■□ 3.18
SHMT1-201ENST00000316694 BAZ1AQ9NRL2 1556 aaPredicted RBP34.71■■■■□ 3.15
SHMT1-201ENST00000316694 ZEB1P37275 1124 aaPredicted RBP34.63■■■■□ 3.13
SHMT1-201ENST00000316694 UNC13AQ9UPW8 1703 aa34.6■■■■□ 3.13
SHMT1-201ENST00000316694 SMARCA4P51532 1647 aa34.45■■■■□ 3.11
SHMT1-201ENST00000316694 EIF4G1Q04637 1599 aaKnown RBP34.4■■■■□ 3.1
SHMT1-201ENST00000316694 TOP2AP11388 1531 aaKnown RBP34.37■■■■□ 3.09
SHMT1-201ENST00000316694 CCDC88BA6NC98 1476 aa34.28■■■■□ 3.08
SHMT1-201ENST00000316694 PABPN1Q86U42 306 aaKnown RBP eCLIP34.27■■■■□ 3.08
SHMT1-201ENST00000316694 SMARCA2P51531 1590 aa34.21■■■■□ 3.07
SHMT1-201ENST00000316694 ABCC8Q09428 1581 aa34.18■■■■□ 3.06
SHMT1-201ENST00000316694 BICRAQ9NZM4 1560 aa34.14■■■■□ 3.06
SHMT1-201ENST00000316694 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP33.94■■■■□ 3.02
SHMT1-201ENST00000316694 SOGA1O94964 1423 aa33.89■■■■□ 3.02
SHMT1-201ENST00000316694 CCER1Q8TC90 406 aaPredicted RBP33.87■■■■□ 3.01
SHMT1-201ENST00000316694 CEP162Q5TB80 1403 aa33.84■■■■□ 3.01
SHMT1-201ENST00000316694 TTBK1Q5TCY1 1321 aaPredicted RBP33.82■■■■□ 3
SHMT1-201ENST00000316694 WRNQ14191 1432 aaPredicted RBP eCLIP33.79■■■■□ 3
SHMT1-201ENST00000316694 PEG3Q9GZU2 1588 aa33.76■■■■□ 3
SHMT1-201ENST00000316694 TNIKQ9UKE5 1360 aa33.72■■■□□ 2.99
SHMT1-201ENST00000316694 CSRNP3Q8WYN3 585 aa33.71■■■□□ 2.99
SHMT1-201ENST00000316694 RUSC2Q8N2Y8 1516 aa33.71■■■□□ 2.99
SHMT1-201ENST00000316694 EEA1Q15075 1411 aa33.69■■■□□ 2.98
SHMT1-201ENST00000316694 UBTFP17480 764 aaKnown RBP33.68■■■□□ 2.98
SHMT1-201ENST00000316694 ATAD2BQ9ULI0 1458 aa33.61■■■□□ 2.97
SHMT1-201ENST00000316694 GOLGA3Q08378 1498 aa33.52■■■□□ 2.96
SHMT1-201ENST00000316694 SCAF1Q9H7N4 1312 aaKnown RBP33.51■■■□□ 2.95
SHMT1-201ENST00000316694 BAZ1BQ9UIG0 1483 aaKnown RBP33.51■■■□□ 2.95
SHMT1-201ENST00000316694 SYNJ1O43426 1573 aa33.43■■■□□ 2.94
SHMT1-201ENST00000316694 CEP164Q9UPV0 1460 aa33.3■■■□□ 2.92
SHMT1-201ENST00000316694 DIEXFQ68CQ4 756 aaKnown RBP33.29■■■□□ 2.92
SHMT1-201ENST00000316694 KIF21BO75037 1637 aa33.24■■■□□ 2.91
SHMT1-201ENST00000316694 CLIP1P30622 1438 aa33.17■■■□□ 2.9
SHMT1-201ENST00000316694 ACIN1Q9UKV3 1341 aaKnown RBP33.12■■■□□ 2.89
SHMT1-201ENST00000316694 NEUROD1Q13562 356 aa33.08■■■□□ 2.89
SHMT1-201ENST00000316694 HNRNPUL2Q1KMD3 747 aaKnown RBP33.07■■■□□ 2.88
SHMT1-201ENST00000316694 RAPGEF2Q9Y4G8 1499 aa33.05■■■□□ 2.88
SHMT1-201ENST00000316694 RANGAP1P46060 587 aaPredicted RBP33.03■■■□□ 2.88
SHMT1-201ENST00000316694 VPS8Q8N3P4 1428 aa33.03■■■□□ 2.88
SHMT1-201ENST00000316694 TOP2BQ02880 1626 aa33■■■□□ 2.87
SHMT1-201ENST00000316694 PELP1Q8IZL8 1130 aaKnown RBP32.99■■■□□ 2.87
SHMT1-201ENST00000316694 APLP2Q06481 763 aa32.97■■■□□ 2.87
SHMT1-201ENST00000316694 ZNF316A6NFI3 1004 aaPredicted RBP32.96■■■□□ 2.87
SHMT1-201ENST00000316694 NCAPD3P42695 1498 aa32.96■■■□□ 2.87
SHMT1-201ENST00000316694 CENPBP07199 599 aaPredicted RBP32.93■■■□□ 2.86
SHMT1-201ENST00000316694 HMGXB3Q12766 1538 aa32.91■■■□□ 2.86
SHMT1-201ENST00000316694 BIVM-ERCC5R4GMW8 1640 aa32.87■■■□□ 2.85
SHMT1-201ENST00000316694 GTF3C3Q9Y5Q9 886 aa32.78■■■□□ 2.84
SHMT1-201ENST00000316694 CUX1P39880 1505 aa32.74■■■□□ 2.83
SHMT1-201ENST00000316694 CFTRP13569 1480 aa32.67■■■□□ 2.82
SHMT1-201ENST00000316694 ERICH3Q5RHP9 1530 aa32.66■■■□□ 2.82
SHMT1-201ENST00000316694 PRXQ9BXM0 1461 aa32.65■■■□□ 2.82
SHMT1-201ENST00000316694 YTHDC1Q96MU7 727 aaKnown RBP32.59■■■□□ 2.81
SHMT1-201ENST00000316694 ARAP1Q96P48 1450 aa32.58■■■□□ 2.81
SHMT1-201ENST00000316694 MIER1Q8N108 512 aa32.54■■■□□ 2.8
SHMT1-201ENST00000316694 KIF27Q86VH2 1401 aa32.53■■■□□ 2.8
SHMT1-201ENST00000316694 KANK4Q5T7N3 995 aaPredicted RBP32.48■■■□□ 2.79
SHMT1-201ENST00000316694 PRDM2Q13029 1718 aa32.38■■■□□ 2.77
SHMT1-201ENST00000316694 DHX57Q6P158 1386 aaKnown RBP32.37■■■□□ 2.77
SHMT1-201ENST00000316694 CADPSQ9ULU8 1353 aa32.34■■■□□ 2.77
SHMT1-201ENST00000316694 CLSPNQ9HAW4 1339 aa32.33■■■□□ 2.77
SHMT1-201ENST00000316694 CUX2O14529 1486 aa32.28■■■□□ 2.76
SHMT1-201ENST00000316694 ARHGAP35Q9NRY4 1499 aa32.27■■■□□ 2.76
SHMT1-201ENST00000316694 RRBP1Q9P2E9 1410 aaKnown RBP32.26■■■□□ 2.75
SHMT1-201ENST00000316694 CC2D2AQ9P2K1 1620 aa32.23■■■□□ 2.75
SHMT1-201ENST00000316694 IGF1RP08069 1367 aa32.23■■■□□ 2.75
SHMT1-201ENST00000316694 FGD5Q6ZNL6 1462 aa32.17■■■□□ 2.74
SHMT1-201ENST00000316694 CCNB3Q8WWL7 1395 aa32.17■■■□□ 2.74
SHMT1-201ENST00000316694 ITGAEP38570 1179 aa32.15■■■□□ 2.74
SHMT1-201ENST00000316694 CARMIL1Q5VZK9 1371 aa32.08■■■□□ 2.73
SHMT1-201ENST00000316694 FANCD2Q9BXW9 1451 aa32.03■■■□□ 2.72
SHMT1-201ENST00000316694 TIAM1Q13009 1591 aa31.96■■■□□ 2.71
SHMT1-201ENST00000316694 RAB3GAP2Q9H2M9 1393 aa31.91■■■□□ 2.7
SHMT1-201ENST00000316694 NESP48681 1621 aa31.9■■■□□ 2.7
SHMT1-201ENST00000316694 RAD54L2Q9Y4B4 1467 aa31.9■■■□□ 2.7
SHMT1-201ENST00000316694 MAP3K1Q13233 1512 aa31.87■■■□□ 2.69
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms