RNA–Protein interactions for RNA: ENST00000302787.2

LETM1-201, Transcript of leucine zipper and EF-hand containing transmembrane protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LETM1, Length 5,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LETM1-201ENST00000302787 DCAF8L2P0C7V8 631 aa36.24■■■■□ 3.39
LETM1-201ENST00000302787 NISCHQ9Y2I1 1504 aa35.16■■■■□ 3.22
LETM1-201ENST00000302787 SUPT5HO00267 1087 aaKnown RBP34.85■■■■□ 3.17
LETM1-201ENST00000302787 SHROOM4Q9ULL8 1493 aa34.25■■■■□ 3.07
LETM1-201ENST00000302787 EHMT2Q96KQ7 1210 aa33.62■■■□□ 2.97
LETM1-201ENST00000302787 PELP1Q8IZL8 1130 aaKnown RBP33■■■□□ 2.87
LETM1-201ENST00000302787 APLP2Q06481 763 aa32.92■■■□□ 2.86
LETM1-201ENST00000302787 FAM9AQ8IZU1 332 aaPredicted RBP32.84■■■□□ 2.85
LETM1-201ENST00000302787 PCGF6Q9BYE7 350 aa32.82■■■□□ 2.84
LETM1-201ENST00000302787 TTBK1Q5TCY1 1321 aaPredicted RBP32.54■■■□□ 2.8
LETM1-201ENST00000302787 ZEB1P37275 1124 aaPredicted RBP32.27■■■□□ 2.76
LETM1-201ENST00000302787 TRIM41Q8WV44 630 aa32.27■■■□□ 2.76
LETM1-201ENST00000302787 CENPBP07199 599 aaPredicted RBP32.13■■■□□ 2.73
LETM1-201ENST00000302787 CCER1Q8TC90 406 aaPredicted RBP32.11■■■□□ 2.73
LETM1-201ENST00000302787 RANGAP1P46060 587 aaPredicted RBP32.06■■■□□ 2.72
LETM1-201ENST00000302787 UBTFP17480 764 aaKnown RBP31.8■■■□□ 2.68
LETM1-201ENST00000302787 ATP1B4Q9UN42 357 aaPredicted RBP31.69■■■□□ 2.66
LETM1-201ENST00000302787 ERICH6Q7L0X2 663 aa31.63■■■□□ 2.65
LETM1-201ENST00000302787 PPARGC1BQ86YN6 1023 aaKnown RBP31.46■■■□□ 2.63
LETM1-201ENST00000302787 TRIM26Q12899 539 aaPredicted RBP31.46■■■□□ 2.63
LETM1-201ENST00000302787 YTHDC1Q96MU7 727 aaKnown RBP31.46■■■□□ 2.63
LETM1-201ENST00000302787 NEFLP07196 543 aa31.3■■■□□ 2.6
LETM1-201ENST00000302787 HRCP23327 699 aa31.3■■■□□ 2.6
LETM1-201ENST00000302787 CHIC1Q5VXU3 224 aa31.13■■■□□ 2.57
LETM1-201ENST00000302787 LOC105371045A0A1W2PR82 267 aa31.11■■■□□ 2.57
LETM1-201ENST00000302787 MYT1Q01538 1121 aa30.98■■■□□ 2.55
LETM1-201ENST00000302787 ITGAEP38570 1179 aa30.82■■■□□ 2.52
LETM1-201ENST00000302787 HNRNPUL2Q1KMD3 747 aaKnown RBP30.74■■■□□ 2.51
LETM1-201ENST00000302787 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP30.5■■■□□ 2.47
LETM1-201ENST00000302787 POLR3GLQ9BT43 218 aa30.48■■■□□ 2.47
LETM1-201ENST00000302787 DIEXFQ68CQ4 756 aaKnown RBP30.37■■■□□ 2.45
LETM1-201ENST00000302787 DAXXQ9UER7 740 aaPredicted RBP30.26■■■□□ 2.44
LETM1-201ENST00000302787 MYT1LQ9UL68 1186 aa30.25■■■□□ 2.43
LETM1-201ENST00000302787 CNGB1Q14028 1251 aaPredicted RBP30.21■■■□□ 2.43
LETM1-201ENST00000302787 FAM50AQ14320 339 aaKnown RBP30.05■■■□□ 2.4
LETM1-201ENST00000302787 ABCC9O60706 1549 aa29.93■■■□□ 2.38
LETM1-201ENST00000302787 PABPN1Q86U42 306 aaKnown RBP eCLIP29.89■■■□□ 2.38
LETM1-201ENST00000302787 NEUROD1Q13562 356 aa29.86■■■□□ 2.37
LETM1-201ENST00000302787 TRIM52Q96A61 297 aa29.83■■■□□ 2.37
LETM1-201ENST00000302787 GTF3C3Q9Y5Q9 886 aa29.82■■■□□ 2.36
LETM1-201ENST00000302787 SLC4A1APQ9BWU0 796 aaKnown RBP29.75■■■□□ 2.35
LETM1-201ENST00000302787 RTL5Q5HYW3 569 aaPredicted RBP29.7■■■□□ 2.35
LETM1-201ENST00000302787 ZNF316A6NFI3 1004 aaPredicted RBP29.69■■■□□ 2.34
LETM1-201ENST00000302787 BCANQ96GW7 911 aa29.66■■■□□ 2.34
LETM1-201ENST00000302787 CLSPNQ9HAW4 1339 aa29.64■■■□□ 2.33
LETM1-201ENST00000302787 ANP32CO43423 234 aa29.63■■■□□ 2.33
LETM1-201ENST00000302787 CSRNP3Q8WYN3 585 aa29.48■■■□□ 2.31
LETM1-201ENST00000302787 ZNF326Q5BKZ1 582 aaKnown RBP29.47■■■□□ 2.31
LETM1-201ENST00000302787 ACIN1Q9UKV3 1341 aaKnown RBP29.44■■■□□ 2.3
LETM1-201ENST00000302787 CDK11AQ9UQ88 783 aaPredicted RBP29.41■■■□□ 2.3
LETM1-201ENST00000302787 P3H3Q8IVL6 736 aa29.29■■■□□ 2.28
LETM1-201ENST00000302787 DCAF1Q9Y4B6 1507 aa29.24■■■□□ 2.27
LETM1-201ENST00000302787 FBLN2P98095 1184 aa29.18■■■□□ 2.26
LETM1-201ENST00000302787 ZCCHC6Q5VYS8 1495 aaKnown RBP29.16■■■□□ 2.26
LETM1-201ENST00000302787 SCRIBQ14160 1630 aa29.11■■■□□ 2.25
LETM1-201ENST00000302787 ARID3CA6NKF2 412 aa29.1■■■□□ 2.25
LETM1-201ENST00000302787 CANXP27824 592 aaKnown RBP29■■■□□ 2.23
LETM1-201ENST00000302787 ZBTB47Q9UFB7 747 aaPredicted RBP28.97■■■□□ 2.23
LETM1-201ENST00000302787 ZNF777Q9ULD5 760 aaPredicted RBP28.94■■■□□ 2.22
LETM1-201ENST00000302787 TONSLQ96HA7 1378 aa28.91■■■□□ 2.22
LETM1-201ENST00000302787 ANP32AP39687 249 aaKnown RBP28.89■■■□□ 2.22
LETM1-201ENST00000302787 FKBP8Q14318 412 aa28.89■■■□□ 2.21
LETM1-201ENST00000302787 DDX10Q13206 875 aaKnown RBP28.8■■■□□ 2.2
LETM1-201ENST00000302787 NEFMP07197 916 aa28.76■■■□□ 2.19
LETM1-201ENST00000302787 HNRNPUQ00839 825 aaKnown RBP eCLIP28.76■■■□□ 2.19
LETM1-201ENST00000302787 NPM2Q86SE8 214 aaKnown RBP28.74■■■□□ 2.19
LETM1-201ENST00000302787 BCL11AQ9H165 835 aa28.74■■■□□ 2.19
LETM1-201ENST00000302787 FAM9BQ8IZU0 186 aa28.66■■■□□ 2.18
LETM1-201ENST00000302787 SLC24A1O60721 1099 aa28.65■■■□□ 2.18
LETM1-201ENST00000302787 MYO15BQ96JP2 1530 aa28.6■■■□□ 2.17
LETM1-201ENST00000302787 CCDC180Q9P1Z9 1646 aa28.6■■■□□ 2.17
LETM1-201ENST00000302787 CHIC2Q9UKJ5 165 aa28.56■■■□□ 2.16
LETM1-201ENST00000302787 MIER1Q8N108 512 aa28.54■■■□□ 2.16
LETM1-201ENST00000302787 SCAF1Q9H7N4 1312 aaKnown RBP28.53■■■□□ 2.16
LETM1-201ENST00000302787 CLIP1P30622 1438 aa28.52■■■□□ 2.16
LETM1-201ENST00000302787 SALL2Q9Y467 1007 aaPredicted RBP28.44■■■□□ 2.14
LETM1-201ENST00000302787 TMC1Q8TDI8 760 aa28.43■■■□□ 2.14
LETM1-201ENST00000302787 CHGAP10645 457 aaKnown RBP28.42■■■□□ 2.14
LETM1-201ENST00000302787 CCDC136Q96JN2 1154 aa28.39■■■□□ 2.14
LETM1-201ENST00000302787 MTUS2Q5JR59 1369 aa28.39■■■□□ 2.14
LETM1-201ENST00000302787 MRS2Q9HD23 443 aa28.38■■■□□ 2.13
LETM1-201ENST00000302787 CEP162Q5TB80 1403 aa28.35■■■□□ 2.13
LETM1-201ENST00000302787 RSF1Q96T23 1441 aaPredicted RBP28.34■■■□□ 2.13
LETM1-201ENST00000302787 HIRIP3Q9BW71 556 aaPredicted RBP28.33■■■□□ 2.13
LETM1-201ENST00000302787 UPF2Q9HAU5 1272 aaKnown RBP28.33■■■□□ 2.13
LETM1-201ENST00000302787 GOLGA3Q08378 1498 aa28.32■■■□□ 2.12
LETM1-201ENST00000302787 GRWD1Q9BQ67 446 aaKnown RBP eCLIP28.31■■■□□ 2.121e-6■■■■□ 20.7
LETM1-201ENST00000302787 EEA1Q15075 1411 aa28.31■■■□□ 2.12
LETM1-201ENST00000302787 HSP90AA1P07900 732 aaKnown RBP28.28■■■□□ 2.12
LETM1-201ENST00000302787 KDM2AQ9Y2K7 1162 aa28.26■■■□□ 2.12
LETM1-201ENST00000302787 GOLGA6L2Q8N9W4 650 aaPredicted RBP28.25■■■□□ 2.11
LETM1-201ENST00000302787 STAG3Q9UJ98 1225 aa28.24■■■□□ 2.11
LETM1-201ENST00000302787 TSPY4P0CV99 314 aa28.24■■■□□ 2.11
LETM1-201ENST00000302787 TSPY10P0CW01 314 aa28.24■■■□□ 2.11
LETM1-201ENST00000302787 IRX6P78412 446 aaPredicted RBP28.24■■■□□ 2.11
LETM1-201ENST00000302787 WDR43Q15061 677 aaKnown RBP eCLIP28.23■■■□□ 2.11
LETM1-201ENST00000302787 ESF1Q9H501 851 aaKnown RBP28.22■■■□□ 2.11
LETM1-201ENST00000302787 EIF4G2P78344 907 aaKnown RBP eCLIP28.22■■■□□ 2.11
LETM1-201ENST00000302787 ANP32BQ92688 251 aaKnown RBP28.21■■■□□ 2.11
LETM1-201ENST00000302787 NBR1Q14596 966 aa28.19■■■□□ 2.1
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms