Protein–RNA interactions for Protein: Q01081

U2AF1, Splicing factor U2AF 35 kDa subunit, humanhuman

Known RBP eCLIP

Length 240 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
U2AF1Q01081 YAP1-204ENST00000526343 2393 ntTSL 5 BASIC34.68■■■■□ 3.142e-11■■■□□ 18.9
U2AF1Q01081 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC26.06■■□□□ 1.762e-11■■■□□ 18.9
U2AF1Q01081 CADM1-210ENST00000540951 572 ntTSL 325.92■■□□□ 1.743e-11■■■□□ 18.9
U2AF1Q01081 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC24.56■■□□□ 1.522e-11■■■□□ 18.9
U2AF1Q01081 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC23.85■■□□□ 1.412e-11■■■□□ 18.9
U2AF1Q01081 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC23.23■■□□□ 1.312e-11■■■□□ 18.9
U2AF1Q01081 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC22.39■■□□□ 1.182e-11■■■□□ 18.9
U2AF1Q01081 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC22.09■■□□□ 1.132e-11■■■□□ 18.9
U2AF1Q01081 ANAPC5-210ENST00000536416 677 ntTSL 321.81■■□□□ 1.083e-14■■■□□ 18.9
U2AF1Q01081 ANAPC5-211ENST00000536837 509 ntTSL 421.45■■□□□ 1.023e-14■■■□□ 18.9
U2AF1Q01081 CADM1-211ENST00000541434 1112 ntTSL 1 (best)21.04■□□□□ 0.963e-11■■■□□ 18.9
U2AF1Q01081 ANAPC5-201ENST00000261819 2513 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.83e-14■■■□□ 18.9
U2AF1Q01081 ANAPC5-220ENST00000544442 915 ntTSL 518.71■□□□□ 0.593e-14■■■□□ 18.9
U2AF1Q01081 ANAPC5-216ENST00000539871 704 ntTSL 516.67■□□□□ 0.263e-14■■■□□ 18.9
U2AF1Q01081 ANAPC5-205ENST00000534976 3165 ntTSL 512.75□□□□□ -0.373e-14■■■□□ 18.9
U2AF1Q01081 ANAPC5-218ENST00000541887 2400 ntTSL 5 BASIC11.91□□□□□ -0.53e-14■■■□□ 18.9
U2AF1Q01081 YAP1-203ENST00000524575 1638 ntTSL 2 BASIC10.17□□□□□ -0.782e-11■■■□□ 18.9
U2AF1Q01081 ANAPC5-204ENST00000441917 2147 ntTSL 5 BASIC9.28□□□□□ -0.923e-14■■■□□ 18.9
U2AF1Q01081 CADM1-214ENST00000543249 565 ntTSL 47.83□□□□□ -1.163e-11■■■□□ 18.9
U2AF1Q01081 ANAPC5-217ENST00000541652 753 ntTSL 27.03□□□□□ -1.283e-14■■■□□ 18.9
U2AF1Q01081 YAP1-205ENST00000526594 785 ntTSL 36.18□□□□□ -1.422e-11■■■□□ 18.9
U2AF1Q01081 TXLNGY-201ENST00000253320 7299 ntTSL 2 BASIC2.96□□□□□ -1.942e-6■■■□□ 18.9
U2AF1Q01081 OGT-204ENST00000455587 632 ntTSL 311.46□□□□□ -0.571e-10■■■□□ 18.9
U2AF1Q01081 OGT-201ENST00000373701 3310 ntAPPRIS ALT1 TSL 1 (best) BASIC7.97□□□□□ -1.131e-10■■■□□ 18.9
U2AF1Q01081 OGT-210ENST00000488174 7243 ntTSL 57.57□□□□□ -1.21e-10■■■□□ 18.9
U2AF1Q01081 ATP11A-201ENST00000375630 8768 ntAPPRIS ALT2 TSL 5 BASIC15.59■□□□□ 0.092e-6■■■□□ 18.9
U2AF1Q01081 ATP11A-202ENST00000375645 8795 ntAPPRIS P2 TSL 5 BASIC15.37■□□□□ 0.052e-6■■■□□ 18.9
U2AF1Q01081 ATP11A-210ENST00000471555 5786 ntTSL 1 (best)14.13□□□□□ -0.152e-6■■■□□ 18.9
U2AF1Q01081 ATP11A-212ENST00000487903 8858 ntAPPRIS P2 TSL 5 BASIC12.91□□□□□ -0.342e-6■■■□□ 18.9
U2AF1Q01081 KBTBD2-204ENST00000452926 537 ntTSL 418.11■□□□□ 0.492e-15■■■□□ 18.9
U2AF1Q01081 KBTBD2-203ENST00000424468 593 ntTSL 410.5□□□□□ -0.732e-15■■■□□ 18.9
U2AF1Q01081 KBTBD2-202ENST00000423022 556 ntTSL 37.81□□□□□ -1.162e-15■■■□□ 18.9
U2AF1Q01081 KBTBD2-205ENST00000453627 724 ntTSL 36.09□□□□□ -1.432e-15■■■□□ 18.9
U2AF1Q01081 GARS-201ENST00000389266 2634 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.781e-10■■■□□ 18.9
U2AF1Q01081 GARS-208ENST00000485784 761 ntTSL 212.14□□□□□ -0.471e-10■■■□□ 18.9
U2AF1Q01081 GARS-209ENST00000496643 772 ntTSL 27.09□□□□□ -1.271e-10■■■□□ 18.9
U2AF1Q01081 GARS-202ENST00000444666 619 ntTSL 33.58□□□□□ -1.841e-10■■■□□ 18.9
U2AF1Q01081 GARS-204ENST00000465748 447 ntTSL 22.86□□□□□ -1.951e-10■■■□□ 18.9
U2AF1Q01081 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.361e-14■■■□□ 18.9
U2AF1Q01081 RAB17-203ENST00000409576 466 ntTSL 3 BASIC23.31■■□□□ 1.321e-14■■■□□ 18.9
U2AF1Q01081 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC21.69■■□□□ 1.061e-14■■■□□ 18.9
U2AF1Q01081 RAB17-202ENST00000392001 1792 ntTSL 1 (best)20.59■□□□□ 0.891e-14■■■□□ 18.9
U2AF1Q01081 RAB17-206ENST00000414278 1511 ntTSL 220.57■□□□□ 0.881e-14■■■□□ 18.9
U2AF1Q01081 RAB17-205ENST00000411462 663 ntTSL 220.22■□□□□ 0.831e-14■■■□□ 18.9
U2AF1Q01081 RAB17-208ENST00000430445 421 ntTSL 518.39■□□□□ 0.531e-14■■■□□ 18.9
U2AF1Q01081 RAB17-210ENST00000477149 3211 ntTSL 1 (best)16.51■□□□□ 0.231e-14■■■□□ 18.9
U2AF1Q01081 TMEM50B-201ENST00000420455 3062 ntTSL 1 (best)17.67■□□□□ 0.425e-19■■■□□ 18.8
U2AF1Q01081 TMEM50B-209ENST00000484377 695 ntTSL 212.06□□□□□ -0.485e-19■■■□□ 18.8
U2AF1Q01081 TMEM50B-206ENST00000468874 724 ntTSL 59.13□□□□□ -0.955e-19■■■□□ 18.8
U2AF1Q01081 TMEM50B-207ENST00000470682 364 ntTSL 54.29□□□□□ -1.725e-19■■■□□ 18.8
U2AF1Q01081 PSME4-201ENST00000389993 6581 ntTSL 1 (best)18.92■□□□□ 0.622e-8■■■□□ 18.8
U2AF1Q01081 PSME4-202ENST00000404125 7099 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.432e-8■■■□□ 18.8
U2AF1Q01081 SF3B1-210ENST00000482158 772 ntTSL 27.44□□□□□ -1.221e-13■■■□□ 18.8
U2AF1Q01081 SF3B1-208ENST00000470268 2003 ntTSL 26.28□□□□□ -1.41e-13■■■□□ 18.8
U2AF1Q01081 MARS-222ENST00000551172 699 ntTSL 312.23□□□□□ -0.453e-18■■■□□ 18.8
U2AF1Q01081 MARS-229ENST00000552499 555 ntTSL 36.42□□□□□ -1.383e-18■■■□□ 18.8
U2AF1Q01081 GABRE-209ENST00000486255 6176 ntTSL 1 (best)10.7□□□□□ -0.72e-7■■■□□ 18.8
U2AF1Q01081 TSPAN13-202ENST00000466195 568 ntTSL 416.99■□□□□ 0.315e-13■■■□□ 18.8
U2AF1Q01081 CD46-214ENST00000480003 1258 ntAPPRIS ALT2 TSL 5 BASIC12.8□□□□□ -0.366e-10■■■□□ 18.8
U2AF1Q01081 CD46-202ENST00000322918 3124 ntAPPRIS ALT2 TSL 1 (best) BASIC12.07□□□□□ -0.486e-10■■■□□ 18.8
U2AF1Q01081 CD46-205ENST00000358170 3371 ntAPPRIS ALT2 TSL 1 (best) BASIC10.74□□□□□ -0.696e-10■■■□□ 18.8
U2AF1Q01081 CD46-206ENST00000360212 3081 ntAPPRIS ALT2 TSL 1 (best) BASIC10.59□□□□□ -0.716e-10■■■□□ 18.8
U2AF1Q01081 CD46-208ENST00000367042 3326 ntAPPRIS ALT2 TSL 1 (best) BASIC10.43□□□□□ -0.746e-10■■■□□ 18.8
U2AF1Q01081 CD46-209ENST00000367047 3089 ntTSL 5 BASIC9.98□□□□□ -0.816e-10■■■□□ 18.8
U2AF1Q01081 CD46-204ENST00000357714 3188 ntAPPRIS ALT2 TSL 1 (best) BASIC9.66□□□□□ -0.866e-10■■■□□ 18.8
U2AF1Q01081 CD46-203ENST00000354848 3233 ntAPPRIS ALT2 TSL 1 (best) BASIC9.56□□□□□ -0.886e-10■■■□□ 18.8
U2AF1Q01081 CD46-201ENST00000322875 3278 ntAPPRIS P4 TSL 1 (best) BASIC9.54□□□□□ -0.886e-10■■■□□ 18.8
U2AF1Q01081 CD46-207ENST00000367041 3281 ntAPPRIS ALT2 TSL 1 (best) BASIC9.54□□□□□ -0.886e-10■■■□□ 18.8
U2AF1Q01081 CD46-212ENST00000469535 7826 ntTSL 1 (best)8.98□□□□□ -0.976e-10■■■□□ 18.8
U2AF1Q01081 ABCC3-210ENST00000510633 856 ntTSL 319.6■□□□□ 0.736e-7■■■□□ 18.8
U2AF1Q01081 CC2D1A-206ENST00000589138 2435 ntTSL 521.8■■□□□ 1.081e-9■■■□□ 18.8
U2AF1Q01081 CC2D1A-203ENST00000586955 2743 ntTSL 1 (best)20.33■□□□□ 0.841e-9■■■□□ 18.8
U2AF1Q01081 CC2D1A-208ENST00000589606 3117 ntAPPRIS ALT1 TSL 1 (best) BASIC17.84■□□□□ 0.451e-9■■■□□ 18.8
U2AF1Q01081 CC2D1A-201ENST00000318003 3581 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.441e-9■■■□□ 18.8
U2AF1Q01081 DGCR8-209ENST00000495826 4695 ntTSL 1 (best)17.78■□□□□ 0.441e-6■■■□□ 18.8
U2AF1Q01081 DGCR8-203ENST00000407755 4129 ntTSL 1 (best) BASIC15.37■□□□□ 0.051e-6■■■□□ 18.8
U2AF1Q01081 ATP11A-213ENST00000489577 383 ntTSL 514.94□□□□□ -0.029e-10■■■□□ 18.8
U2AF1Q01081 ATP11A-208ENST00000459908 4516 ntTSL 213.92□□□□□ -0.189e-10■■■□□ 18.8
U2AF1Q01081 ATP11A-204ENST00000418678 3163 ntAPPRIS ALT2 TSL 1 (best)9.69□□□□□ -0.869e-10■■■□□ 18.8
U2AF1Q01081 PNISR-207ENST00000478777 2422 ntTSL 211.88□□□□□ -0.511e-13■■■□□ 18.7
U2AF1Q01081 VPS13D-204ENST00000469054 567 ntTSL 315.98■□□□□ 0.155e-7■■■□□ 18.7
U2AF1Q01081 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.172e-6■■■□□ 18.7
U2AF1Q01081 UFD1-204ENST00000447868 596 ntTSL 333.46■■■□□ 2.951e-8■■■□□ 18.7
U2AF1Q01081 UFD1-209ENST00000489406 994 ntTSL 219.87■□□□□ 0.771e-8■■■□□ 18.7
U2AF1Q01081 UFD1-203ENST00000421968 670 ntTSL 315.66■□□□□ 0.11e-8■■■□□ 18.7
U2AF1Q01081 UFD1-210ENST00000494054 588 ntTSL 513.08□□□□□ -0.321e-8■■■□□ 18.7
U2AF1Q01081 UFD1-208ENST00000484101 751 ntTSL 512.58□□□□□ -0.41e-8■■■□□ 18.7
U2AF1Q01081 UFD1-207ENST00000474226 293 ntTSL 55.96□□□□□ -1.461e-8■■■□□ 18.7
U2AF1Q01081 TAF1D-207ENST00000527169 1127 ntTSL 523.54■■□□□ 1.367e-6■■■□□ 18.7
U2AF1Q01081 NAP1L1-202ENST00000393263 1896 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.87e-6■■■□□ 18.7
U2AF1Q01081 NAP1L1-201ENST00000261182 4441 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.437e-6■■■□□ 18.7
U2AF1Q01081 NAP1L1-206ENST00000544816 1597 ntTSL 2 BASIC16.28■□□□□ 0.27e-6■■■□□ 18.7
U2AF1Q01081 NAP1L1-226ENST00000552342 1526 ntTSL 5 BASIC16.27■□□□□ 0.27e-6■■■□□ 18.7
U2AF1Q01081 POLE-201ENST00000320574 7840 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.031e-7■■■□□ 18.7
U2AF1Q01081 NAP1L1-210ENST00000547773 1967 ntTSL 5 BASIC15.07■□□□□ 07e-6■■■□□ 18.7
U2AF1Q01081 POLE-207ENST00000535270 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -01e-7■■■□□ 18.7
U2AF1Q01081 NAP1L1-205ENST00000542344 1675 ntTSL 2 BASIC14.9□□□□□ -0.027e-6■■■□□ 18.7
U2AF1Q01081 POLE-210ENST00000537064 8011 ntTSL 1 (best)13.24□□□□□ -0.291e-7■■■□□ 18.7
U2AF1Q01081 NAP1L1-203ENST00000431879 2031 ntTSL 2 BASIC13.06□□□□□ -0.327e-6■■■□□ 18.7
U2AF1Q01081 NAP1L1-216ENST00000549596 1838 ntTSL 2 BASIC12.64□□□□□ -0.397e-6■■■□□ 18.7
Retrieved 100 of 10,096 protein–RNA pairs in 53.5 ms