RNA–Protein interactions for RNA: ENST00000489406.1

UFD1-209, Transcript of ubiquitin recognition factor in ER associated degradation 1, humanhuman

TSL 2

Gene UFD1, Length 994 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UFD1-209ENST00000489406 NISCHQ9Y2I1 1504 aa39.31■■■■□ 3.88
UFD1-209ENST00000489406 ABCC9O60706 1549 aa37.17■■■■□ 3.54
UFD1-209ENST00000489406 DNAJC5BQ9UF47 199 aa36.07■■■■□ 3.36
UFD1-209ENST00000489406 CCDC180Q9P1Z9 1646 aa35.75■■■■□ 3.31
UFD1-209ENST00000489406 RB1CC1Q8TDY2 1594 aa34.71■■■■□ 3.15
UFD1-209ENST00000489406 PABPN1Q86U42 306 aaKnown RBP eCLIP34.46■■■■□ 3.11
UFD1-209ENST00000489406 NACADO15069 1562 aa34.15■■■■□ 3.06
UFD1-209ENST00000489406 DNAJC5Q9H3Z4 198 aa34.01■■■■□ 3.03
UFD1-209ENST00000489406 DCAF8L2P0C7V8 631 aa33.92■■■■□ 3.02
UFD1-209ENST00000489406 UNC13AQ9UPW8 1703 aa33.9■■■■□ 3.02
UFD1-209ENST00000489406 BICRAQ9NZM4 1560 aa33.78■■■■□ 3
UFD1-209ENST00000489406 CECR2Q9BXF3 1484 aa33.58■■■□□ 2.97
UFD1-209ENST00000489406 CC2D2AQ9P2K1 1620 aa33.45■■■□□ 2.95
UFD1-209ENST00000489406 MYO15BQ96JP2 1530 aa33.19■■■□□ 2.9
UFD1-209ENST00000489406 SHROOM4Q9ULL8 1493 aa33.08■■■□□ 2.89
UFD1-209ENST00000489406 EIF4G1Q04637 1599 aaKnown RBP33.05■■■□□ 2.88
UFD1-209ENST00000489406 SCRIBQ14160 1630 aa32.6■■■□□ 2.81
UFD1-209ENST00000489406 CUX2O14529 1486 aa32.47■■■□□ 2.79
UFD1-209ENST00000489406 DCAF1Q9Y4B6 1507 aa32.32■■■□□ 2.76
UFD1-209ENST00000489406 ZCCHC6Q5VYS8 1495 aaKnown RBP32.28■■■□□ 2.76
UFD1-209ENST00000489406 ERCC6Q03468 1493 aa32.16■■■□□ 2.74
UFD1-209ENST00000489406 TRIM41Q8WV44 630 aa32.07■■■□□ 2.72
UFD1-209ENST00000489406 NCAPD3P42695 1498 aa31.58■■■□□ 2.65
UFD1-209ENST00000489406 NESP48681 1621 aa31.56■■■□□ 2.64
UFD1-209ENST00000489406 THOC2Q8NI27 1593 aaKnown RBP31.41■■■□□ 2.62
UFD1-209ENST00000489406 ATAD2BQ9ULI0 1458 aa31.31■■■□□ 2.6
UFD1-209ENST00000489406 SMARCA2P51531 1590 aa31.21■■■□□ 2.59
UFD1-209ENST00000489406 HMGXB3Q12766 1538 aa31.18■■■□□ 2.58
UFD1-209ENST00000489406 KIF21AQ7Z4S6 1674 aa31.04■■■□□ 2.56
UFD1-209ENST00000489406 LAMC3Q9Y6N6 1575 aa31.04■■■□□ 2.56
UFD1-209ENST00000489406 PDS5BQ9NTI5 1447 aa30.95■■■□□ 2.54
UFD1-209ENST00000489406 BAZ1BQ9UIG0 1483 aaKnown RBP30.94■■■□□ 2.54
UFD1-209ENST00000489406 SMARCA4P51532 1647 aa30.93■■■□□ 2.54
UFD1-209ENST00000489406 BAZ1AQ9NRL2 1556 aaPredicted RBP30.88■■■□□ 2.53
UFD1-209ENST00000489406 OSCARQ8IYS5 282 aa30.87■■■□□ 2.53
UFD1-209ENST00000489406 MRC2Q9UBG0 1479 aa30.76■■■□□ 2.51
UFD1-209ENST00000489406 WDR62O43379 1518 aa30.69■■■□□ 2.5
UFD1-209ENST00000489406 PEG3Q9GZU2 1588 aa30.58■■■□□ 2.49
UFD1-209ENST00000489406 CADPSQ9ULU8 1353 aa30.58■■■□□ 2.49
UFD1-209ENST00000489406 RIMBP3CA6NJZ7 1639 aa30.55■■■□□ 2.48
UFD1-209ENST00000489406 RIMBP3BA6NNM3 1639 aa30.55■■■□□ 2.48
UFD1-209ENST00000489406 RIMBP3Q9UFD9 1639 aa30.55■■■□□ 2.48
UFD1-209ENST00000489406 AEBP2Q6ZN18 517 aaPredicted RBP30.44■■■□□ 2.46
UFD1-209ENST00000489406 TRHP20396 242 aaPredicted RBP30.38■■■□□ 2.45
UFD1-209ENST00000489406 CEP164Q9UPV0 1460 aa30.38■■■□□ 2.45
UFD1-209ENST00000489406 ARHGEF11O15085 1522 aa30.33■■■□□ 2.45
UFD1-209ENST00000489406 MROH2BQ7Z745 1585 aa30.32■■■□□ 2.44
UFD1-209ENST00000489406 CYB5RLQ6IPT4 315 aa30.28■■■□□ 2.44
UFD1-209ENST00000489406 FANCD2Q9BXW9 1451 aa30.24■■■□□ 2.43
UFD1-209ENST00000489406 URB2Q14146 1524 aaKnown RBP30.07■■■□□ 2.4
UFD1-209ENST00000489406 ARAP1Q96P48 1450 aa29.95■■■□□ 2.39
UFD1-209ENST00000489406 CFTRP13569 1480 aa29.94■■■□□ 2.38
UFD1-209ENST00000489406 ZNF608Q9ULD9 1512 aaPredicted RBP29.94■■■□□ 2.38
UFD1-209ENST00000489406 WIZO95785 1651 aa29.88■■■□□ 2.37
UFD1-209ENST00000489406 IFT140Q96RY7 1462 aa29.8■■■□□ 2.36
UFD1-209ENST00000489406 RSF1Q96T23 1441 aaPredicted RBP29.69■■■□□ 2.34
UFD1-209ENST00000489406 CHD1O14646 1710 aa29.67■■■□□ 2.34
UFD1-209ENST00000489406 FBLN2P98095 1184 aa29.66■■■□□ 2.34
UFD1-209ENST00000489406 EIF4G3O43432 1585 aaKnown RBP29.65■■■□□ 2.34
UFD1-209ENST00000489406 AQRO60306 1485 aaKnown RBP eCLIP29.53■■■□□ 2.325e-8■■■■□ 24.6
UFD1-209ENST00000489406 TOPBP1Q92547 1522 aa29.51■■■□□ 2.32
UFD1-209ENST00000489406 PRDM2Q13029 1718 aa29.43■■■□□ 2.3
UFD1-209ENST00000489406 TOP2AP11388 1531 aaKnown RBP29.37■■■□□ 2.29
UFD1-209ENST00000489406 TARBP1Q13395 1621 aaKnown RBP29.33■■■□□ 2.29
UFD1-209ENST00000489406 ILDR1Q86SU0 546 aaPredicted RBP29.32■■■□□ 2.28
UFD1-209ENST00000489406 ABCC8Q09428 1581 aa29.31■■■□□ 2.28
UFD1-209ENST00000489406 CLASP1Q7Z460 1538 aa29.3■■■□□ 2.28
UFD1-209ENST00000489406 DNMBPQ6XZF7 1577 aa29.26■■■□□ 2.27
UFD1-209ENST00000489406 CHMP7Q8WUX9 453 aaPredicted RBP29.18■■■□□ 2.26
UFD1-209ENST00000489406 SYNJ1O43426 1573 aa29.16■■■□□ 2.26
UFD1-209ENST00000489406 TDRD9Q8NDG6 1382 aaKnown RBP29.15■■■□□ 2.26
UFD1-209ENST00000489406 SNAPC4Q5SXM2 1469 aa29.15■■■□□ 2.26
UFD1-209ENST00000489406 GAPVD1Q14C86 1478 aa29.14■■■□□ 2.26
UFD1-209ENST00000489406 POLA1P09884 1462 aaPredicted RBP29.13■■■□□ 2.25
UFD1-209ENST00000489406 CCDC88BA6NC98 1476 aa29.1■■■□□ 2.25
UFD1-209ENST00000489406 RAD54L2Q9Y4B4 1467 aa29.1■■■□□ 2.25
UFD1-209ENST00000489406 SOGA1O94964 1423 aa29.01■■■□□ 2.23
UFD1-209ENST00000489406 MAGI1Q96QZ7 1491 aaPredicted RBP28.97■■■□□ 2.23
UFD1-209ENST00000489406 SYNJ2O15056 1496 aa28.91■■■□□ 2.22
UFD1-209ENST00000489406 GRIN2BQ13224 1484 aa28.87■■■□□ 2.21
UFD1-209ENST00000489406 WDR97A6NE52 1622 aa28.85■■■□□ 2.21
UFD1-209ENST00000489406 KDM4FA0A1W2PPD8 638 aa28.85■■■□□ 2.21
UFD1-209ENST00000489406 ERCC6L2Q5T890 1561 aa28.81■■■□□ 2.2
UFD1-209ENST00000489406 KIF13AQ9H1H9 1805 aa28.79■■■□□ 2.2
UFD1-209ENST00000489406 FGD5Q6ZNL6 1462 aa28.78■■■□□ 2.2
UFD1-209ENST00000489406 PBRM1Q86U86 1689 aa28.62■■■□□ 2.17
UFD1-209ENST00000489406 FAM69CQ0P6D2 419 aa28.61■■■□□ 2.17
UFD1-209ENST00000489406 CEP170Q5SW79 1584 aa28.6■■■□□ 2.17
UFD1-209ENST00000489406 CUX1P39880 1505 aa28.54■■■□□ 2.16
UFD1-209ENST00000489406 GRIN2AQ12879 1464 aa28.5■■■□□ 2.15
UFD1-209ENST00000489406 ABCC10Q5T3U5 1492 aa28.5■■■□□ 2.15
UFD1-209ENST00000489406 KDM6BO15054 1643 aa28.48■■■□□ 2.15
UFD1-209ENST00000489406 NUP160Q12769 1436 aa28.43■■■□□ 2.14
UFD1-209ENST00000489406 SHROOM2Q13796 1616 aa28.43■■■□□ 2.14
UFD1-209ENST00000489406 ABCA5Q8WWZ7 1642 aa28.4■■■□□ 2.14
UFD1-209ENST00000489406 NPM1P06748 294 aaKnown RBP eCLIP28.38■■■□□ 2.13
UFD1-209ENST00000489406 DIP2BQ9P265 1576 aa28.37■■■□□ 2.13
UFD1-209ENST00000489406 ABCA10Q8WWZ4 1543 aa28.33■■■□□ 2.13
UFD1-209ENST00000489406 PRG4Q92954 1404 aaPredicted RBP28.32■■■□□ 2.12
UFD1-209ENST00000489406 MAPKBP1O60336 1514 aa28.3■■■□□ 2.12
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms