RNA–Protein interactions for RNA: ENST00000421968.6

UFD1-203, Transcript of ubiquitin recognition factor in ER associated degradation 1, humanhuman

TSL 3

Gene UFD1, Length 670 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UFD1-203ENST00000421968 NISCHQ9Y2I1 1504 aa31.22■■■□□ 2.59
UFD1-203ENST00000421968 ABCC9O60706 1549 aa29.75■■■□□ 2.35
UFD1-203ENST00000421968 DNAJC5BQ9UF47 199 aa28.97■■■□□ 2.23
UFD1-203ENST00000421968 CCDC180Q9P1Z9 1646 aa28.5■■■□□ 2.15
UFD1-203ENST00000421968 RB1CC1Q8TDY2 1594 aa27.74■■■□□ 2.03
UFD1-203ENST00000421968 PABPN1Q86U42 306 aaKnown RBP eCLIP27.55■■■□□ 2
UFD1-203ENST00000421968 DNAJC5Q9H3Z4 198 aa27.47■■□□□ 1.99
UFD1-203ENST00000421968 NACADO15069 1562 aa27.25■■□□□ 1.95
UFD1-203ENST00000421968 UNC13AQ9UPW8 1703 aa27.09■■□□□ 1.93
UFD1-203ENST00000421968 DCAF8L2P0C7V8 631 aa27.02■■□□□ 1.92
UFD1-203ENST00000421968 BICRAQ9NZM4 1560 aa26.96■■□□□ 1.91
UFD1-203ENST00000421968 CECR2Q9BXF3 1484 aa26.91■■□□□ 1.9
UFD1-203ENST00000421968 CC2D2AQ9P2K1 1620 aa26.77■■□□□ 1.88
UFD1-203ENST00000421968 SHROOM4Q9ULL8 1493 aa26.44■■□□□ 1.82
UFD1-203ENST00000421968 MYO15BQ96JP2 1530 aa26.44■■□□□ 1.82
UFD1-203ENST00000421968 EIF4G1Q04637 1599 aaKnown RBP26.41■■□□□ 1.82
UFD1-203ENST00000421968 CUX2O14529 1486 aa26.08■■□□□ 1.77
UFD1-203ENST00000421968 SCRIBQ14160 1630 aa25.96■■□□□ 1.75
UFD1-203ENST00000421968 TRIM41Q8WV44 630 aa25.84■■□□□ 1.73
UFD1-203ENST00000421968 ERCC6Q03468 1493 aa25.79■■□□□ 1.72
UFD1-203ENST00000421968 DCAF1Q9Y4B6 1507 aa25.68■■□□□ 1.7
UFD1-203ENST00000421968 ZCCHC6Q5VYS8 1495 aaKnown RBP25.6■■□□□ 1.69
UFD1-203ENST00000421968 NESP48681 1621 aa25.2■■□□□ 1.62
UFD1-203ENST00000421968 NCAPD3P42695 1498 aa25.18■■□□□ 1.62
UFD1-203ENST00000421968 THOC2Q8NI27 1593 aaKnown RBP25.13■■□□□ 1.61
UFD1-203ENST00000421968 SMARCA2P51531 1590 aa24.95■■□□□ 1.58
UFD1-203ENST00000421968 ATAD2BQ9ULI0 1458 aa24.95■■□□□ 1.58
UFD1-203ENST00000421968 HMGXB3Q12766 1538 aa24.86■■□□□ 1.57
UFD1-203ENST00000421968 KIF21AQ7Z4S6 1674 aa24.81■■□□□ 1.56
UFD1-203ENST00000421968 LAMC3Q9Y6N6 1575 aa24.8■■□□□ 1.56
UFD1-203ENST00000421968 OSCARQ8IYS5 282 aa24.76■■□□□ 1.55
UFD1-203ENST00000421968 BAZ1AQ9NRL2 1556 aaPredicted RBP24.75■■□□□ 1.55
UFD1-203ENST00000421968 PDS5BQ9NTI5 1447 aa24.73■■□□□ 1.55
UFD1-203ENST00000421968 BAZ1BQ9UIG0 1483 aaKnown RBP24.66■■□□□ 1.54
UFD1-203ENST00000421968 AEBP2Q6ZN18 517 aaPredicted RBP24.61■■□□□ 1.53
UFD1-203ENST00000421968 SMARCA4P51532 1647 aa24.61■■□□□ 1.53
UFD1-203ENST00000421968 MRC2Q9UBG0 1479 aa24.58■■□□□ 1.52
UFD1-203ENST00000421968 WDR62O43379 1518 aa24.52■■□□□ 1.52
UFD1-203ENST00000421968 RIMBP3CA6NJZ7 1639 aa24.52■■□□□ 1.52
UFD1-203ENST00000421968 RIMBP3BA6NNM3 1639 aa24.52■■□□□ 1.52
UFD1-203ENST00000421968 RIMBP3Q9UFD9 1639 aa24.52■■□□□ 1.52
UFD1-203ENST00000421968 TRHP20396 242 aaPredicted RBP24.43■■□□□ 1.5
UFD1-203ENST00000421968 CADPSQ9ULU8 1353 aa24.39■■□□□ 1.49
UFD1-203ENST00000421968 PEG3Q9GZU2 1588 aa24.34■■□□□ 1.49
UFD1-203ENST00000421968 ARHGEF11O15085 1522 aa24.32■■□□□ 1.48
UFD1-203ENST00000421968 CYB5RLQ6IPT4 315 aa24.29■■□□□ 1.48
UFD1-203ENST00000421968 CEP164Q9UPV0 1460 aa24.25■■□□□ 1.47
UFD1-203ENST00000421968 FANCD2Q9BXW9 1451 aa24.12■■□□□ 1.45
UFD1-203ENST00000421968 MROH2BQ7Z745 1585 aa24.06■■□□□ 1.44
UFD1-203ENST00000421968 ARAP1Q96P48 1450 aa24■■□□□ 1.43
UFD1-203ENST00000421968 URB2Q14146 1524 aaKnown RBP23.98■■□□□ 1.43
UFD1-203ENST00000421968 ZNF608Q9ULD9 1512 aaPredicted RBP23.89■■□□□ 1.42
UFD1-203ENST00000421968 CFTRP13569 1480 aa23.83■■□□□ 1.41
UFD1-203ENST00000421968 IFT140Q96RY7 1462 aa23.8■■□□□ 1.4
UFD1-203ENST00000421968 RSF1Q96T23 1441 aaPredicted RBP23.77■■□□□ 1.4
UFD1-203ENST00000421968 CHD1O14646 1710 aa23.73■■□□□ 1.39
UFD1-203ENST00000421968 ILDR1Q86SU0 546 aaPredicted RBP23.72■■□□□ 1.39
UFD1-203ENST00000421968 WIZO95785 1651 aa23.72■■□□□ 1.39
UFD1-203ENST00000421968 FBLN2P98095 1184 aa23.7■■□□□ 1.38
UFD1-203ENST00000421968 EIF4G3O43432 1585 aaKnown RBP23.67■■□□□ 1.38
UFD1-203ENST00000421968 AQRO60306 1485 aaKnown RBP eCLIP23.55■■□□□ 1.361e-7■■■■■ 29.9
UFD1-203ENST00000421968 TOPBP1Q92547 1522 aa23.52■■□□□ 1.36
UFD1-203ENST00000421968 PRDM2Q13029 1718 aa23.46■■□□□ 1.35
UFD1-203ENST00000421968 CLASP1Q7Z460 1538 aa23.41■■□□□ 1.34
UFD1-203ENST00000421968 ABCC8Q09428 1581 aa23.37■■□□□ 1.33
UFD1-203ENST00000421968 TARBP1Q13395 1621 aaKnown RBP23.37■■□□□ 1.33
UFD1-203ENST00000421968 SYNJ1O43426 1573 aa23.31■■□□□ 1.32
UFD1-203ENST00000421968 TOP2AP11388 1531 aaKnown RBP23.31■■□□□ 1.32
UFD1-203ENST00000421968 DNMBPQ6XZF7 1577 aa23.31■■□□□ 1.32
UFD1-203ENST00000421968 GAPVD1Q14C86 1478 aa23.3■■□□□ 1.32
UFD1-203ENST00000421968 CHMP7Q8WUX9 453 aaPredicted RBP23.3■■□□□ 1.32
UFD1-203ENST00000421968 SNAPC4Q5SXM2 1469 aa23.25■■□□□ 1.31
UFD1-203ENST00000421968 TDRD9Q8NDG6 1382 aaKnown RBP23.23■■□□□ 1.31
UFD1-203ENST00000421968 POLA1P09884 1462 aaPredicted RBP23.19■■□□□ 1.3
UFD1-203ENST00000421968 KDM4FA0A1W2PPD8 638 aa23.17■■□□□ 1.3
UFD1-203ENST00000421968 RAD54L2Q9Y4B4 1467 aa23.16■■□□□ 1.3
UFD1-203ENST00000421968 MAGI1Q96QZ7 1491 aaPredicted RBP23.11■■□□□ 1.29
UFD1-203ENST00000421968 SOGA1O94964 1423 aa23.1■■□□□ 1.29
UFD1-203ENST00000421968 CCDC88BA6NC98 1476 aa23.09■■□□□ 1.29
UFD1-203ENST00000421968 KIF13AQ9H1H9 1805 aa23.08■■□□□ 1.28
UFD1-203ENST00000421968 SYNJ2O15056 1496 aa23.07■■□□□ 1.28
UFD1-203ENST00000421968 GRIN2BQ13224 1484 aa23.02■■□□□ 1.28
UFD1-203ENST00000421968 WDR97A6NE52 1622 aa23.01■■□□□ 1.27
UFD1-203ENST00000421968 ERCC6L2Q5T890 1561 aa22.99■■□□□ 1.27
UFD1-203ENST00000421968 FAM69CQ0P6D2 419 aa22.91■■□□□ 1.26
UFD1-203ENST00000421968 FGD5Q6ZNL6 1462 aa22.89■■□□□ 1.25
UFD1-203ENST00000421968 KDM6BO15054 1643 aa22.84■■□□□ 1.25
UFD1-203ENST00000421968 CEP170Q5SW79 1584 aa22.83■■□□□ 1.25
UFD1-203ENST00000421968 PBRM1Q86U86 1689 aa22.82■■□□□ 1.24
UFD1-203ENST00000421968 ABCC10Q5T3U5 1492 aa22.8■■□□□ 1.24
UFD1-203ENST00000421968 HECW2Q9P2P5 1572 aa22.75■■□□□ 1.23
UFD1-203ENST00000421968 FBXO41Q8TF61 875 aa22.73■■□□□ 1.23
UFD1-203ENST00000421968 GRIN2AQ12879 1464 aa22.72■■□□□ 1.23
UFD1-203ENST00000421968 NPM1P06748 294 aaKnown RBP eCLIP22.7■■□□□ 1.22
UFD1-203ENST00000421968 DIP2BQ9P265 1576 aa22.7■■□□□ 1.22
UFD1-203ENST00000421968 ADGRL1O94910 1474 aa22.68■■□□□ 1.22
UFD1-203ENST00000421968 SHROOM2Q13796 1616 aa22.68■■□□□ 1.22
UFD1-203ENST00000421968 CUX1P39880 1505 aa22.67■■□□□ 1.22
UFD1-203ENST00000421968 TSPOAP1O95153 1857 aa22.66■■□□□ 1.22
UFD1-203ENST00000421968 NUP160Q12769 1436 aa22.66■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms