RNA–Protein interactions for RNA: ENST00000474226.1

UFD1-207, Transcript of ubiquitin recognition factor in ER associated degradation 1, humanhuman

TSL 5

Gene UFD1, Length 293 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UFD1-207ENST00000474226 AEBP2Q6ZN18 517 aaPredicted RBP24.83■■□□□ 1.57
UFD1-207ENST00000474226 CHIC1Q5VXU3 224 aa24■■□□□ 1.43
UFD1-207ENST00000474226 SENP3Q9H4L4 574 aaPredicted RBP21.14■□□□□ 0.97
UFD1-207ENST00000474226 PHF23Q9BUL5 403 aaPredicted RBP21.07■□□□□ 0.96
UFD1-207ENST00000474226 FOXD1Q16676 465 aa19.64■□□□□ 0.73
UFD1-207ENST00000474226 PLPPR3Q6T4P5 718 aa19.39■□□□□ 0.69
UFD1-207ENST00000474226 PPP6R1Q9UPN7 881 aa18.68■□□□□ 0.58
UFD1-207ENST00000474226 ADRA2BP18089 450 aa18.66■□□□□ 0.58
UFD1-207ENST00000474226 PIAS4Q8N2W9 510 aaPredicted RBP18.48■□□□□ 0.55
UFD1-207ENST00000474226 MSH5O43196 834 aa18.23■□□□□ 0.51
UFD1-207ENST00000474226 SCAF1Q9H7N4 1312 aaKnown RBP17.11■□□□□ 0.33
UFD1-207ENST00000474226 POTEDQ86YR6 584 aa17.06■□□□□ 0.32
UFD1-207ENST00000474226 PPP4R3CPQ6ZMV5 832 aa17.05■□□□□ 0.32
UFD1-207ENST00000474226 MAPK8IP2Q13387 824 aaPredicted RBP17.01■□□□□ 0.31
UFD1-207ENST00000474226 DMRT2Q9Y5R5 561 aa16.82■□□□□ 0.28
UFD1-207ENST00000474226 CNKSR2Q8WXI2 1034 aa16.63■□□□□ 0.25
UFD1-207ENST00000474226 NCBP3Q53F19 620 aaKnown RBP16.54■□□□□ 0.24
UFD1-207ENST00000474226 RNF216Q9NWF9 866 aaPredicted RBP16.37■□□□□ 0.21
UFD1-207ENST00000474226 HOXD11P31277 338 aaPredicted RBP16.36■□□□□ 0.21
UFD1-207ENST00000474226 KCNA4P22459 653 aa16.35■□□□□ 0.21
UFD1-207ENST00000474226 NPM3O75607 178 aaKnown RBP16.28■□□□□ 0.2
UFD1-207ENST00000474226 DCAF8L1A6NGE4 600 aa16.15■□□□□ 0.18
UFD1-207ENST00000474226 DNAJC5BQ9UF47 199 aa15.81■□□□□ 0.12
UFD1-207ENST00000474226 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.63■□□□□ 0.096e-6■□□□□ 11
UFD1-207ENST00000474226 RNF39Q9H2S5 420 aa15.59■□□□□ 0.09
UFD1-207ENST00000474226 SLC4A1APQ9BWU0 796 aaKnown RBP15.53■□□□□ 0.08
UFD1-207ENST00000474226 SLC4A2P04920 1241 aa15.42■□□□□ 0.06
UFD1-207ENST00000474226 CACNB1Q02641 598 aaPredicted RBP15.4■□□□□ 0.06
UFD1-207ENST00000474226 C1QBPQ07021 282 aaKnown RBP15.39■□□□□ 0.05
UFD1-207ENST00000474226 U3KPZ7 1027 aaPredicted RBP15.32■□□□□ 0.04
UFD1-207ENST00000474226 FOXD4L1Q9NU39 408 aa15.13■□□□□ 0.01
UFD1-207ENST00000474226 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.06■□□□□ 0
UFD1-207ENST00000474226 HNRNPUL2Q1KMD3 747 aaKnown RBP15.06■□□□□ 0
UFD1-207ENST00000474226 MYCNP04198 464 aaPredicted RBP15.05■□□□□ -0
UFD1-207ENST00000474226 ZBTB22O15209 634 aa15.02■□□□□ -0
UFD1-207ENST00000474226 SAMD1Q6SPF0 538 aaPredicted RBP14.99□□□□□ -0.01
UFD1-207ENST00000474226 APLP2Q06481 763 aa14.97□□□□□ -0.01
UFD1-207ENST00000474226 SPINK5Q9NQ38 1064 aaPredicted RBP14.97□□□□□ -0.01
UFD1-207ENST00000474226 CAPN15O75808 1086 aa14.95□□□□□ -0.02
UFD1-207ENST00000474226 TRHP20396 242 aaPredicted RBP14.82□□□□□ -0.04
UFD1-207ENST00000474226 ZNF219Q9P2Y4 722 aaPredicted RBP14.8□□□□□ -0.04
UFD1-207ENST00000474226 EHMT2Q96KQ7 1210 aa14.79□□□□□ -0.04
UFD1-207ENST00000474226 DSG3P32926 999 aa14.74□□□□□ -0.05
UFD1-207ENST00000474226 CSRNP3Q8WYN3 585 aa14.72□□□□□ -0.05
UFD1-207ENST00000474226 ATF5Q9Y2D1 282 aaPredicted RBP14.66□□□□□ -0.06
UFD1-207ENST00000474226 ABCB7O75027 752 aa14.63□□□□□ -0.07
UFD1-207ENST00000474226 ATXN8OSP0DMR3 200 aa14.61□□□□□ -0.07
UFD1-207ENST00000474226 POLA2Q14181 598 aa14.5□□□□□ -0.09
UFD1-207ENST00000474226 ZBTB12Q9Y330 459 aaPredicted RBP14.25□□□□□ -0.13
UFD1-207ENST00000474226 FBLN2P98095 1184 aa14.09□□□□□ -0.15
UFD1-207ENST00000474226 RBM42Q9BTD8 480 aaKnown RBP14.07□□□□□ -0.16
UFD1-207ENST00000474226 OSCARQ8IYS5 282 aa14.03□□□□□ -0.16
UFD1-207ENST00000474226 MKRN4PQ13434 485 aaPredicted RBP14□□□□□ -0.17
UFD1-207ENST00000474226 SPDYE2BA6NHP3 402 aa13.83□□□□□ -0.2
UFD1-207ENST00000474226 SPDYE6P0CI01 402 aa13.83□□□□□ -0.2
UFD1-207ENST00000474226 SPDYE2Q495Y8 402 aa13.83□□□□□ -0.2
UFD1-207ENST00000474226 AKT1S1Q96B36 256 aa13.83□□□□□ -0.2
UFD1-207ENST00000474226 ZNF692Q9BU19 519 aaPredicted RBP13.75□□□□□ -0.21
UFD1-207ENST00000474226 REM2Q8IYK8 340 aaPredicted RBP13.7□□□□□ -0.22
UFD1-207ENST00000474226 SSUH2Q9Y2M2 353 aa13.69□□□□□ -0.22
UFD1-207ENST00000474226 SPDYE4A6NLX3 237 aa13.59□□□□□ -0.23
UFD1-207ENST00000474226 CHRDL2Q6WN34 429 aa13.59□□□□□ -0.23
UFD1-207ENST00000474226 PABPN1Q86U42 306 aaKnown RBP eCLIP13.56□□□□□ -0.24
UFD1-207ENST00000474226 PITPNM1O00562 1244 aa13.54□□□□□ -0.24
UFD1-207ENST00000474226 SPDYE1Q8NFV5 336 aaPredicted RBP13.5□□□□□ -0.25
UFD1-207ENST00000474226 POTEHQ6S545 545 aa13.47□□□□□ -0.25
UFD1-207ENST00000474226 CLEC11AQ9Y240 323 aa13.47□□□□□ -0.25
UFD1-207ENST00000474226 FKBP8Q14318 412 aa13.35□□□□□ -0.27
UFD1-207ENST00000474226 PIP4P2Q8N4L2 257 aa13.35□□□□□ -0.27
UFD1-207ENST00000474226 FXR2P51116 673 aaKnown RBP eCLIP13.34□□□□□ -0.27
UFD1-207ENST00000474226 PRR29P0C7W0 189 aa13.3□□□□□ -0.28
UFD1-207ENST00000474226 PROM2Q8N271 834 aa13.28□□□□□ -0.28
UFD1-207ENST00000474226 STAG3Q9UJ98 1225 aa13.28□□□□□ -0.28
UFD1-207ENST00000474226 PRKAR2AP13861 404 aaKnown RBP13.22□□□□□ -0.29
UFD1-207ENST00000474226 CHADLQ6NUI6 762 aa13.15□□□□□ -0.3
UFD1-207ENST00000474226 CREBZFQ9NS37 354 aa13.05□□□□□ -0.32
UFD1-207ENST00000474226 HAX1O00165 279 aa13.02□□□□□ -0.33
UFD1-207ENST00000474226 FARP1Q9Y4F1 1045 aaPredicted RBP13□□□□□ -0.33
UFD1-207ENST00000474226 FBXO3Q9UK99 471 aa12.95□□□□□ -0.34
UFD1-207ENST00000474226 MIER1Q8N108 512 aa12.92□□□□□ -0.34
UFD1-207ENST00000474226 PLEKHG5O94827 1062 aa12.9□□□□□ -0.34
UFD1-207ENST00000474226 C19orf67A6NJJ6 358 aa12.89□□□□□ -0.35
UFD1-207ENST00000474226 PLCD3Q8N3E9 789 aa12.88□□□□□ -0.35
UFD1-207ENST00000474226 MNX1P50219 401 aaPredicted RBP12.87□□□□□ -0.35
UFD1-207ENST00000474226 NPM1P06748 294 aaKnown RBP eCLIP12.85□□□□□ -0.35
UFD1-207ENST00000474226 EVX2Q03828 476 aa12.85□□□□□ -0.35
UFD1-207ENST00000474226 SP7Q8TDD2 431 aaPredicted RBP12.83□□□□□ -0.36
UFD1-207ENST00000474226 CD44P16070 742 aaKnown RBP12.82□□□□□ -0.36
UFD1-207ENST00000474226 VASPP50552 380 aaPredicted RBP12.77□□□□□ -0.37
UFD1-207ENST00000474226 ZBTB47Q9UFB7 747 aaPredicted RBP12.75□□□□□ -0.37
UFD1-207ENST00000474226 PAK3O75914 559 aaPredicted RBP12.72□□□□□ -0.37
UFD1-207ENST00000474226 ZRANB1Q9UGI0 708 aa12.71□□□□□ -0.37
UFD1-207ENST00000474226 KLHL34Q8N239 644 aa12.64□□□□□ -0.39
UFD1-207ENST00000474226 ZNF579Q8NAF0 562 aaKnown RBP12.63□□□□□ -0.39
UFD1-207ENST00000474226 TSPYL2Q9H2G4 693 aaPredicted RBP12.63□□□□□ -0.39
UFD1-207ENST00000474226 RASEFQ8IZ41 740 aa12.61□□□□□ -0.39
UFD1-207ENST00000474226 GABBR2O75899 941 aa12.6□□□□□ -0.39
UFD1-207ENST00000474226 NUBP1P53384 320 aa12.6□□□□□ -0.39
UFD1-207ENST00000474226 IFNLR1Q8IU57 520 aaPredicted RBP12.57□□□□□ -0.4
UFD1-207ENST00000474226 CLCN6P51797 869 aa12.56□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms