Protein–RNA interactions for Protein: Q8NHQ9

DDX55, ATP-dependent RNA helicase DDX55, humanhuman

Known RBP eCLIP

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55Q8NHQ9 POR-222ENST00000493973 1028 ntTSL 221.35■■□□□ 1.011e-9■■■□□ 18.5
DDX55Q8NHQ9 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.062e-7■■■□□ 18.5
DDX55Q8NHQ9 HDAC1-206ENST00000476391 2409 ntTSL 1 (best)14.82□□□□□ -0.042e-7■■■□□ 18.5
DDX55Q8NHQ9 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.673e-6■■■□□ 18.5
DDX55Q8NHQ9 HDHD3-201ENST00000238379 1834 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.363e-6■■■□□ 18.5
DDX55Q8NHQ9 NME1-205ENST00000465188 521 ntTSL 210.59□□□□□ -0.711e-6■■■□□ 18.5
DDX55Q8NHQ9 TMUB1-206ENST00000488752 584 ntTSL 227.32■■□□□ 1.966e-7■■■□□ 18.4
DDX55Q8NHQ9 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC22.24■■□□□ 1.151e-20■■■□□ 18.4
DDX55Q8NHQ9 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC21.08■□□□□ 0.976e-7■■■□□ 18.4
DDX55Q8NHQ9 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.861e-12■■■□□ 18.4
DDX55Q8NHQ9 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC20.16■□□□□ 0.821e-20■■■□□ 18.4
DDX55Q8NHQ9 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.477e-31■■■□□ 18.4
DDX55Q8NHQ9 BRD3-201ENST00000303407 5652 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.413e-9■■■□□ 18.4
DDX55Q8NHQ9 ETV4-202ENST00000393664 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.161e-12■■■□□ 18.4
DDX55Q8NHQ9 ETV4-203ENST00000538265 2147 ntTSL 2 BASIC15.3■□□□□ 0.041e-12■■■□□ 18.4
DDX55Q8NHQ9 TMUB1-207ENST00000492838 550 ntTSL 513.37□□□□□ -0.276e-7■■■□□ 18.4
DDX55Q8NHQ9 TCIRG1-214ENST00000533005 1655 ntTSL 524.21■■□□□ 1.478e-8■■■□□ 18.4
DDX55Q8NHQ9 TCIRG1-205ENST00000525724 1864 ntTSL 522.24■■□□□ 1.158e-8■■■□□ 18.4
DDX55Q8NHQ9 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC20.37■□□□□ 0.858e-8■■■□□ 18.4
DDX55Q8NHQ9 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.588e-8■■■□□ 18.4
DDX55Q8NHQ9 PHF23-201ENST00000320316 2037 ntAPPRIS P1 TSL 1 (best) BASIC29.24■■■□□ 2.271e-7■■■□□ 18.4
DDX55Q8NHQ9 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC27.47■■□□□ 1.991e-7■■■□□ 18.4
DDX55Q8NHQ9 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC26.53■■□□□ 1.841e-7■■■□□ 18.4
DDX55Q8NHQ9 DDA1-202ENST00000593466 757 ntTSL 324.07■■□□□ 1.441e-7■■■□□ 18.4
DDX55Q8NHQ9 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC23.85■■□□□ 1.411e-7■■■□□ 18.4
DDX55Q8NHQ9 DDA1-204ENST00000596582 502 ntTSL 323.45■■□□□ 1.341e-7■■■□□ 18.4
DDX55Q8NHQ9 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.341e-7■■■□□ 18.4
DDX55Q8NHQ9 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC22.09■■□□□ 1.132e-18■■■□□ 18.4
DDX55Q8NHQ9 C1orf43-207ENST00000470180 1861 ntTSL 519.09■□□□□ 0.652e-18■■■□□ 18.4
DDX55Q8NHQ9 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC18.74■□□□□ 0.592e-18■■■□□ 18.4
DDX55Q8NHQ9 HGS-202ENST00000570355 735 ntTSL 518.7■□□□□ 0.581e-7■■■□□ 18.4
DDX55Q8NHQ9 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC18.04■□□□□ 0.482e-18■■■□□ 18.4
DDX55Q8NHQ9 C1orf43-205ENST00000368519 1163 ntTSL 2 BASIC17.99■□□□□ 0.472e-18■■■□□ 18.4
DDX55Q8NHQ9 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC17.82■□□□□ 0.441e-7■■■□□ 18.4
DDX55Q8NHQ9 HS2ST1-201ENST00000370550 6736 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.281e-7■■■□□ 18.4
DDX55Q8NHQ9 PACSIN2-201ENST00000263246 3249 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.211e-7■■■□□ 18.4
DDX55Q8NHQ9 C1orf43-206ENST00000368521 1708 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.172e-18■■■□□ 18.4
DDX55Q8NHQ9 SLC25A11-205ENST00000576951 893 ntTSL 515.42■□□□□ 0.061e-7■■■□□ 18.4
DDX55Q8NHQ9 CEMIP-201ENST00000220244 7226 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.063e-6■■■□□ 18.4
DDX55Q8NHQ9 CEMIP-202ENST00000356249 7297 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.033e-6■■■□□ 18.4
DDX55Q8NHQ9 CCDC117-202ENST00000421503 3766 ntTSL 2 BASIC14.84□□□□□ -0.031e-7■■■□□ 18.4
DDX55Q8NHQ9 CEMIP-203ENST00000394685 7357 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.083e-6■■■□□ 18.4
DDX55Q8NHQ9 HGS-213ENST00000575078 330 ntTSL 314.56□□□□□ -0.081e-7■■■□□ 18.4
DDX55Q8NHQ9 PACSIN2-202ENST00000337959 3149 ntTSL 5 BASIC14.34□□□□□ -0.111e-7■■■□□ 18.4
DDX55Q8NHQ9 CCDC117-205ENST00000448492 3937 ntTSL 2 BASIC14.32□□□□□ -0.121e-7■■■□□ 18.4
DDX55Q8NHQ9 CCDC117-201ENST00000249064 3985 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.131e-7■■■□□ 18.4
DDX55Q8NHQ9 GMPR2-226ENST00000560139 583 ntTSL 512.91□□□□□ -0.341e-7■■■□□ 18.4
DDX55Q8NHQ9 DDA1-201ENST00000359866 4078 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.441e-7■■■□□ 18.4
DDX55Q8NHQ9 CHP1-201ENST00000334660 3329 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.461e-7■■■□□ 18.4
DDX55Q8NHQ9 SLC25A11-203ENST00000570543 322 ntTSL 511.96□□□□□ -0.491e-7■■■□□ 18.4
DDX55Q8NHQ9 GMPR2-222ENST00000559801 466 ntTSL 211.82□□□□□ -0.521e-7■■■□□ 18.4
DDX55Q8NHQ9 GMPR2-228ENST00000561035 877 ntTSL 511.82□□□□□ -0.521e-7■■■□□ 18.4
DDX55Q8NHQ9 GMPR2-208ENST00000558279 346 ntTSL 29.6□□□□□ -0.871e-7■■■□□ 18.4
DDX55Q8NHQ9 GMPR2-212ENST00000558760 817 ntTSL 29.28□□□□□ -0.921e-7■■■□□ 18.4
DDX55Q8NHQ9 GMPR2-216ENST00000559102 721 ntTSL 39.28□□□□□ -0.921e-7■■■□□ 18.4
DDX55Q8NHQ9 PROX1-201ENST00000261454 8170 ntAPPRIS P1 TSL 1 (best) BASIC9.18□□□□□ -0.942e-18■■■□□ 18.4
DDX55Q8NHQ9 C1orf43-208ENST00000483282 456 ntTSL 39.04□□□□□ -0.962e-18■■■□□ 18.4
DDX55Q8NHQ9 GMPR2-230ENST00000561130 842 ntTSL 38.76□□□□□ -1.011e-7■■■□□ 18.4
DDX55Q8NHQ9 KDM4C-205ENST00000428870 3039 ntTSL 2 BASIC8.55□□□□□ -1.041e-7■■■□□ 18.4
DDX55Q8NHQ9 PROX1-202ENST00000366958 8240 ntAPPRIS P1 TSL 1 (best) BASIC8.26□□□□□ -1.092e-18■■■□□ 18.4
DDX55Q8NHQ9 PACSIN2-211ENST00000507586 362 ntTSL 37.89□□□□□ -1.151e-7■■■□□ 18.4
DDX55Q8NHQ9 GMPR2-219ENST00000559409 601 ntTSL 37.57□□□□□ -1.21e-7■■■□□ 18.4
DDX55Q8NHQ9 PROX1-205ENST00000498508 8498 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.452e-18■■■□□ 18.4
DDX55Q8NHQ9 AC093155.3-201ENST00000370548 2013 ntAPPRIS P1 TSL 2 BASIC5.95□□□□□ -1.461e-7■■■□□ 18.4
DDX55Q8NHQ9 GMPR2-210ENST00000558701 402 ntTSL 34.31□□□□□ -1.721e-7■■■□□ 18.4
DDX55Q8NHQ9 MVD-205ENST00000562981 537 ntTSL 220.9■□□□□ 0.949e-16■■■□□ 18.4
DDX55Q8NHQ9 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.873e-7■■■□□ 18.4
DDX55Q8NHQ9 UBP1-204ENST00000447368 3669 ntAPPRIS ALT1 TSL 2 BASIC13.25□□□□□ -0.293e-7■■■□□ 18.4
DDX55Q8NHQ9 UBP1-212ENST00000492136 7394 ntTSL 27.53□□□□□ -1.23e-7■■■□□ 18.4
DDX55Q8NHQ9 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC29■■■□□ 2.231e-6■■■□□ 18.4
DDX55Q8NHQ9 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC29■■■□□ 2.231e-6■■■□□ 18.4
DDX55Q8NHQ9 YIF1A-207ENST00000484814 541 ntTSL 326.67■■□□□ 1.861e-6■■■□□ 18.4
DDX55Q8NHQ9 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC26.1■■□□□ 1.771e-6■■■□□ 18.4
DDX55Q8NHQ9 YIF1A-209ENST00000494836 540 ntTSL 219.6■□□□□ 0.731e-6■■■□□ 18.4
DDX55Q8NHQ9 YIF1A-208ENST00000485820 653 ntTSL 218.35■□□□□ 0.531e-6■■■□□ 18.4
DDX55Q8NHQ9 YIF1A-211ENST00000526497 516 ntTSL 517.79■□□□□ 0.441e-6■■■□□ 18.4
DDX55Q8NHQ9 SH2B1-209ENST00000563674 719 ntTSL 328.28■■■□□ 2.124e-7■■■□□ 18.4
DDX55Q8NHQ9 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC28.11■■■□□ 2.094e-7■■■□□ 18.4
DDX55Q8NHQ9 ANXA5-206ENST00000511552 1036 ntTSL 327.98■■■□□ 2.074e-7■■■□□ 18.4
DDX55Q8NHQ9 SH2B1-215ENST00000569651 821 ntTSL 523.67■■□□□ 1.384e-7■■■□□ 18.4
DDX55Q8NHQ9 CPNE7-208ENST00000566398 672 ntTSL 323.31■■□□□ 1.324e-10■■■□□ 18.4
DDX55Q8NHQ9 CPNE7-209ENST00000568977 682 ntTSL 523.05■■□□□ 1.284e-10■■■□□ 18.4
DDX55Q8NHQ9 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC22.36■■□□□ 1.174e-7■■■□□ 18.4
DDX55Q8NHQ9 CPNE7-204ENST00000526232 488 ntTSL 322.19■■□□□ 1.144e-10■■■□□ 18.4
DDX55Q8NHQ9 STARD3-213ENST00000578384 721 ntTSL 321.72■■□□□ 1.074e-7■■■□□ 18.4
DDX55Q8NHQ9 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.994e-7■■■□□ 18.4
DDX55Q8NHQ9 ATG2A-203ENST00000421419 1481 ntTSL 1 (best) BASIC21.07■□□□□ 0.964e-7■■■□□ 18.4
DDX55Q8NHQ9 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.964e-7■■■□□ 18.4
DDX55Q8NHQ9 CPNE7-207ENST00000564421 517 ntTSL 320.6■□□□□ 0.894e-10■■■□□ 18.4
DDX55Q8NHQ9 TRAPPC9-210ENST00000521667 2021 ntTSL 1 (best)20.51■□□□□ 0.874e-7■■■□□ 18.4
DDX55Q8NHQ9 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.844e-7■■■□□ 18.4
DDX55Q8NHQ9 GRHPR-204ENST00000480596 1893 ntTSL 220.18■□□□□ 0.824e-7■■■□□ 18.4
DDX55Q8NHQ9 GRHPR-203ENST00000460882 1080 ntTSL 1 (best)20■□□□□ 0.794e-7■■■□□ 18.4
DDX55Q8NHQ9 UPF1-210ENST00000600689 3084 ntTSL 218.99■□□□□ 0.634e-7■■■□□ 18.4
DDX55Q8NHQ9 AP000721.1-201ENST00000535431 559 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.614e-7■■■□□ 18.4
DDX55Q8NHQ9 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC18.57■□□□□ 0.564e-7■■■□□ 18.4
DDX55Q8NHQ9 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC17.98■□□□□ 0.474e-7■■■□□ 18.4
DDX55Q8NHQ9 CRELD1-209ENST00000482691 690 ntTSL 317.58■□□□□ 0.45e-17■■■□□ 18.4
DDX55Q8NHQ9 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.394e-7■■■□□ 18.4
DDX55Q8NHQ9 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC17.22■□□□□ 0.354e-7■■■□□ 18.4
Retrieved 100 of 15,504 protein–RNA pairs in 175.1 ms