RNA–Protein interactions for RNA: ENST00000238379.9

HDHD3-201, Transcript of haloacid dehalogenase like hydrolase domain containing 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HDHD3, Length 1,834 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDHD3-201ENST00000238379 NISCHQ9Y2I1 1504 aa34.57■■■■□ 3.12
HDHD3-201ENST00000238379 CCDC180Q9P1Z9 1646 aa30.11■■■□□ 2.41
HDHD3-201ENST00000238379 ZCCHC6Q5VYS8 1495 aaKnown RBP29.04■■■□□ 2.24
HDHD3-201ENST00000238379 DCAF1Q9Y4B6 1507 aa28.59■■■□□ 2.17
HDHD3-201ENST00000238379 DCAF8L2P0C7V8 631 aa28.54■■■□□ 2.16
HDHD3-201ENST00000238379 ABCC9O60706 1549 aa28.51■■■□□ 2.15
HDHD3-201ENST00000238379 MYO15BQ96JP2 1530 aa28.25■■■□□ 2.11
HDHD3-201ENST00000238379 SHROOM4Q9ULL8 1493 aa28.18■■■□□ 2.1
HDHD3-201ENST00000238379 NACADO15069 1562 aa28.06■■■□□ 2.08
HDHD3-201ENST00000238379 RB1CC1Q8TDY2 1594 aa27.81■■■□□ 2.04
HDHD3-201ENST00000238379 SCRIBQ14160 1630 aa27.69■■■□□ 2.02
HDHD3-201ENST00000238379 UNC13AQ9UPW8 1703 aa27.25■■□□□ 1.95
HDHD3-201ENST00000238379 SUPT5HO00267 1087 aaKnown RBP27.12■■□□□ 1.93
HDHD3-201ENST00000238379 BICRAQ9NZM4 1560 aa27.02■■□□□ 1.92
HDHD3-201ENST00000238379 PABPN1Q86U42 306 aaKnown RBP eCLIP26.91■■□□□ 1.9
HDHD3-201ENST00000238379 CECR2Q9BXF3 1484 aa26.88■■□□□ 1.89
HDHD3-201ENST00000238379 RSF1Q96T23 1441 aaPredicted RBP26.84■■□□□ 1.89
HDHD3-201ENST00000238379 MROH2BQ7Z745 1585 aa26.72■■□□□ 1.87
HDHD3-201ENST00000238379 BAZ1AQ9NRL2 1556 aaPredicted RBP26.68■■□□□ 1.86
HDHD3-201ENST00000238379 SMARCA4P51532 1647 aa26.56■■□□□ 1.84
HDHD3-201ENST00000238379 WIZO95785 1651 aa26.47■■□□□ 1.83
HDHD3-201ENST00000238379 PEG3Q9GZU2 1588 aa26.25■■□□□ 1.79
HDHD3-201ENST00000238379 TOP2AP11388 1531 aaKnown RBP26.2■■□□□ 1.78
HDHD3-201ENST00000238379 EIF4G1Q04637 1599 aaKnown RBP26.19■■□□□ 1.78
HDHD3-201ENST00000238379 ATAD2BQ9ULI0 1458 aa26.15■■□□□ 1.78
HDHD3-201ENST00000238379 SMARCA2P51531 1590 aa26.11■■□□□ 1.77
HDHD3-201ENST00000238379 CHIC1Q5VXU3 224 aa25.98■■□□□ 1.75
HDHD3-201ENST00000238379 BAZ1BQ9UIG0 1483 aaKnown RBP25.97■■□□□ 1.75
HDHD3-201ENST00000238379 CCDC88BA6NC98 1476 aa25.95■■□□□ 1.74
HDHD3-201ENST00000238379 NCAPD3P42695 1498 aa25.94■■□□□ 1.74
HDHD3-201ENST00000238379 HMGXB3Q12766 1538 aa25.86■■□□□ 1.73
HDHD3-201ENST00000238379 CC2D2AQ9P2K1 1620 aa25.79■■□□□ 1.72
HDHD3-201ENST00000238379 TRIM41Q8WV44 630 aa25.49■■□□□ 1.67
HDHD3-201ENST00000238379 ABCC8Q09428 1581 aa25.39■■□□□ 1.65
HDHD3-201ENST00000238379 CFTRP13569 1480 aa25.35■■□□□ 1.65
HDHD3-201ENST00000238379 CADPSQ9ULU8 1353 aa25.27■■□□□ 1.64
HDHD3-201ENST00000238379 WRNQ14191 1432 aaPredicted RBP eCLIP25.23■■□□□ 1.63
HDHD3-201ENST00000238379 DNAJC5BQ9UF47 199 aa25.22■■□□□ 1.63
HDHD3-201ENST00000238379 PRDM2Q13029 1718 aa25.15■■□□□ 1.62
HDHD3-201ENST00000238379 SYNJ1O43426 1573 aa25.13■■□□□ 1.61
HDHD3-201ENST00000238379 NESP48681 1621 aa25.05■■□□□ 1.6
HDHD3-201ENST00000238379 FAM9AQ8IZU1 332 aaPredicted RBP25.03■■□□□ 1.6
HDHD3-201ENST00000238379 TOP2BQ02880 1626 aa25.02■■□□□ 1.6
HDHD3-201ENST00000238379 LAMC3Q9Y6N6 1575 aa25.02■■□□□ 1.6
HDHD3-201ENST00000238379 BIVM-ERCC5R4GMW8 1640 aa24.98■■□□□ 1.59
HDHD3-201ENST00000238379 LOC105371045A0A1W2PR82 267 aa24.98■■□□□ 1.59
HDHD3-201ENST00000238379 FANCD2Q9BXW9 1451 aa24.97■■□□□ 1.59
HDHD3-201ENST00000238379 CUX1P39880 1505 aa24.97■■□□□ 1.59
HDHD3-201ENST00000238379 SOGA1O94964 1423 aa24.93■■□□□ 1.58
HDHD3-201ENST00000238379 EEA1Q15075 1411 aa24.85■■□□□ 1.57
HDHD3-201ENST00000238379 RUSC2Q8N2Y8 1516 aa24.85■■□□□ 1.57
HDHD3-201ENST00000238379 PDS5BQ9NTI5 1447 aa24.83■■□□□ 1.57
HDHD3-201ENST00000238379 CEP164Q9UPV0 1460 aa24.8■■□□□ 1.56
HDHD3-201ENST00000238379 CSRNP3Q8WYN3 585 aa24.75■■□□□ 1.55
HDHD3-201ENST00000238379 DNMBPQ6XZF7 1577 aa24.73■■□□□ 1.55
HDHD3-201ENST00000238379 KIF21AQ7Z4S6 1674 aa24.7■■□□□ 1.54
HDHD3-201ENST00000238379 TOPBP1Q92547 1522 aa24.7■■□□□ 1.54
HDHD3-201ENST00000238379 FGD5Q6ZNL6 1462 aa24.69■■□□□ 1.54
HDHD3-201ENST00000238379 URB2Q14146 1524 aaKnown RBP24.67■■□□□ 1.54
HDHD3-201ENST00000238379 EHMT2Q96KQ7 1210 aa24.66■■□□□ 1.54
HDHD3-201ENST00000238379 KIF27Q86VH2 1401 aa24.6■■□□□ 1.53
HDHD3-201ENST00000238379 POLA1P09884 1462 aaPredicted RBP24.58■■□□□ 1.53
HDHD3-201ENST00000238379 CUX2O14529 1486 aa24.53■■□□□ 1.52
HDHD3-201ENST00000238379 KIF21BO75037 1637 aa24.52■■□□□ 1.52
HDHD3-201ENST00000238379 MRC2Q9UBG0 1479 aa24.52■■□□□ 1.52
HDHD3-201ENST00000238379 GOLGA3Q08378 1498 aa24.51■■□□□ 1.51
HDHD3-201ENST00000238379 RAD54L2Q9Y4B4 1467 aa24.51■■□□□ 1.51
HDHD3-201ENST00000238379 ABCA10Q8WWZ4 1543 aa24.48■■□□□ 1.51
HDHD3-201ENST00000238379 TNIKQ9UKE5 1360 aa24.46■■□□□ 1.51
HDHD3-201ENST00000238379 PRXQ9BXM0 1461 aa24.45■■□□□ 1.5
HDHD3-201ENST00000238379 ERCC6Q03468 1493 aa24.42■■□□□ 1.5
HDHD3-201ENST00000238379 RAPGEF2Q9Y4G8 1499 aa24.42■■□□□ 1.5
HDHD3-201ENST00000238379 UBTFP17480 764 aaKnown RBP24.41■■□□□ 1.5
HDHD3-201ENST00000238379 IGF1RP08069 1367 aa24.41■■□□□ 1.5
HDHD3-201ENST00000238379 WDR62O43379 1518 aa24.39■■□□□ 1.5
HDHD3-201ENST00000238379 WDR97A6NE52 1622 aa24.38■■□□□ 1.49
HDHD3-201ENST00000238379 ERICH3Q5RHP9 1530 aa24.37■■□□□ 1.49
HDHD3-201ENST00000238379 TARBP1Q13395 1621 aaKnown RBP24.34■■□□□ 1.49
HDHD3-201ENST00000238379 CEP162Q5TB80 1403 aa24.31■■□□□ 1.48
HDHD3-201ENST00000238379 THOC2Q8NI27 1593 aaKnown RBP24.31■■□□□ 1.48
HDHD3-201ENST00000238379 TDRD9Q8NDG6 1382 aaKnown RBP24.28■■□□□ 1.48
HDHD3-201ENST00000238379 CARMIL1Q5VZK9 1371 aa24.27■■□□□ 1.48
HDHD3-201ENST00000238379 ABCA5Q8WWZ7 1642 aa24.27■■□□□ 1.48
HDHD3-201ENST00000238379 GAPVD1Q14C86 1478 aa24.23■■□□□ 1.47
HDHD3-201ENST00000238379 IFT140Q96RY7 1462 aa24.22■■□□□ 1.47
HDHD3-201ENST00000238379 CUL7Q14999 1698 aa24.16■■□□□ 1.46
HDHD3-201ENST00000238379 CLIP1P30622 1438 aa24.13■■□□□ 1.45
HDHD3-201ENST00000238379 AQRO60306 1485 aaKnown RBP eCLIP24.13■■□□□ 1.459e-16■■■■■ 44.1
HDHD3-201ENST00000238379 ZNF608Q9ULD9 1512 aaPredicted RBP24.1■■□□□ 1.45
HDHD3-201ENST00000238379 PBRM1Q86U86 1689 aa24.05■■□□□ 1.44
HDHD3-201ENST00000238379 GRIN2BQ13224 1484 aa24.04■■□□□ 1.44
HDHD3-201ENST00000238379 RANGAP1P46060 587 aaPredicted RBP24■■□□□ 1.43
HDHD3-201ENST00000238379 EIF4G3O43432 1585 aaKnown RBP23.99■■□□□ 1.43
HDHD3-201ENST00000238379 FHAD1B1AJZ9 1412 aa23.97■■□□□ 1.43
HDHD3-201ENST00000238379 ADAMTS12P58397 1594 aa23.95■■□□□ 1.42
HDHD3-201ENST00000238379 VPS8Q8N3P4 1428 aa23.92■■□□□ 1.42
HDHD3-201ENST00000238379 ARAP1Q96P48 1450 aa23.9■■□□□ 1.42
HDHD3-201ENST00000238379 ARHGAP35Q9NRY4 1499 aa23.9■■□□□ 1.42
HDHD3-201ENST00000238379 SNAPC4Q5SXM2 1469 aa23.88■■□□□ 1.41
HDHD3-201ENST00000238379 CTTNBP2Q8WZ74 1663 aa23.88■■□□□ 1.41
Retrieved 100 of 20,778 RNA–protein pairs in 98.5 ms