RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 DCAF8L2P0C7V8 631 aa32.69■■■□□ 2.82
UPF1-201ENST00000262803 NISCHQ9Y2I1 1504 aa31.62■■■□□ 2.65
UPF1-201ENST00000262803 SUPT5HO00267 1087 aaKnown RBP31.42■■■□□ 2.62
UPF1-201ENST00000262803 SHROOM4Q9ULL8 1493 aa30.84■■■□□ 2.53
UPF1-201ENST00000262803 PELP1Q8IZL8 1130 aaKnown RBP30.31■■■□□ 2.44
UPF1-201ENST00000262803 EHMT2Q96KQ7 1210 aa30.27■■■□□ 2.44
UPF1-201ENST00000262803 FAM9AQ8IZU1 332 aaPredicted RBP30.26■■■□□ 2.43
UPF1-201ENST00000262803 APLP2Q06481 763 aa30.13■■■□□ 2.41
UPF1-201ENST00000262803 PCGF6Q9BYE7 350 aa29.57■■■□□ 2.32
UPF1-201ENST00000262803 TTBK1Q5TCY1 1321 aaPredicted RBP29.3■■■□□ 2.28
UPF1-201ENST00000262803 TRIM41Q8WV44 630 aa29.08■■■□□ 2.25
UPF1-201ENST00000262803 ZEB1P37275 1124 aaPredicted RBP29.02■■■□□ 2.24
UPF1-201ENST00000262803 CCER1Q8TC90 406 aaPredicted RBP28.95■■■□□ 2.22
UPF1-201ENST00000262803 CENPBP07199 599 aaPredicted RBP28.89■■■□□ 2.22
UPF1-201ENST00000262803 RANGAP1P46060 587 aaPredicted RBP28.88■■■□□ 2.21
UPF1-201ENST00000262803 UBTFP17480 764 aaKnown RBP28.66■■■□□ 2.18
UPF1-201ENST00000262803 ERICH6Q7L0X2 663 aa28.66■■■□□ 2.18
UPF1-201ENST00000262803 ATP1B4Q9UN42 357 aaPredicted RBP28.64■■■□□ 2.18
UPF1-201ENST00000262803 NEFLP07196 543 aa28.36■■■□□ 2.13
UPF1-201ENST00000262803 PPARGC1BQ86YN6 1023 aaKnown RBP28.35■■■□□ 2.13
UPF1-201ENST00000262803 TRIM26Q12899 539 aaPredicted RBP28.32■■■□□ 2.12
UPF1-201ENST00000262803 YTHDC1Q96MU7 727 aaKnown RBP28.28■■■□□ 2.12
UPF1-201ENST00000262803 HRCP23327 699 aa28.18■■■□□ 2.1
UPF1-201ENST00000262803 CHIC1Q5VXU3 224 aa28.09■■■□□ 2.09
UPF1-201ENST00000262803 LOC105371045A0A1W2PR82 267 aa28.05■■■□□ 2.08
UPF1-201ENST00000262803 MYT1LQ9UL68 1186 aa27.9■■■□□ 2.06
UPF1-201ENST00000262803 MYT1Q01538 1121 aa27.82■■■□□ 2.04
UPF1-201ENST00000262803 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP27.81■■■□□ 2.04
UPF1-201ENST00000262803 HNRNPUL2Q1KMD3 747 aaKnown RBP27.81■■■□□ 2.04
UPF1-201ENST00000262803 ITGAEP38570 1179 aa27.77■■■□□ 2.04
UPF1-201ENST00000262803 DAXXQ9UER7 740 aaPredicted RBP27.65■■■□□ 2.02
UPF1-201ENST00000262803 POLR3GLQ9BT43 218 aa27.44■■□□□ 1.98
UPF1-201ENST00000262803 DIEXFQ68CQ4 756 aaKnown RBP27.34■■□□□ 1.97
UPF1-201ENST00000262803 CNGB1Q14028 1251 aaPredicted RBP27.22■■□□□ 1.95
UPF1-201ENST00000262803 SLC4A1APQ9BWU0 796 aaKnown RBP27.12■■□□□ 1.93
UPF1-201ENST00000262803 FAM50AQ14320 339 aaKnown RBP27.04■■□□□ 1.92
UPF1-201ENST00000262803 ABCC9O60706 1549 aa26.96■■□□□ 1.91
UPF1-201ENST00000262803 PABPN1Q86U42 306 aaKnown RBP eCLIP26.96■■□□□ 1.91
UPF1-201ENST00000262803 TRIM52Q96A61 297 aa26.91■■□□□ 1.9
UPF1-201ENST00000262803 ZNF316A6NFI3 1004 aaPredicted RBP26.91■■□□□ 1.9
UPF1-201ENST00000262803 CLSPNQ9HAW4 1339 aa26.9■■□□□ 1.9
UPF1-201ENST00000262803 NEUROD1Q13562 356 aa26.87■■□□□ 1.89
UPF1-201ENST00000262803 GTF3C3Q9Y5Q9 886 aa26.82■■□□□ 1.88
UPF1-201ENST00000262803 RTL5Q5HYW3 569 aaPredicted RBP26.79■■□□□ 1.88
UPF1-201ENST00000262803 ZBTB47Q9UFB7 747 aaPredicted RBP26.77■■□□□ 1.88
UPF1-201ENST00000262803 BCANQ96GW7 911 aa26.68■■□□□ 1.86
UPF1-201ENST00000262803 ANP32CO43423 234 aa26.66■■□□□ 1.86
UPF1-201ENST00000262803 NEFMP07197 916 aa26.65■■□□□ 1.86
UPF1-201ENST00000262803 CSRNP3Q8WYN3 585 aa26.6■■□□□ 1.85
UPF1-201ENST00000262803 CDK11AQ9UQ88 783 aaPredicted RBP26.57■■□□□ 1.84
UPF1-201ENST00000262803 FBLN2P98095 1184 aa26.55■■□□□ 1.84
UPF1-201ENST00000262803 ZNF326Q5BKZ1 582 aaKnown RBP26.54■■□□□ 1.84
UPF1-201ENST00000262803 ACIN1Q9UKV3 1341 aaKnown RBP26.49■■□□□ 1.83
UPF1-201ENST00000262803 P3H3Q8IVL6 736 aa26.4■■□□□ 1.82
UPF1-201ENST00000262803 ESF1Q9H501 851 aaKnown RBP26.37■■□□□ 1.81
UPF1-201ENST00000262803 CANXP27824 592 aaKnown RBP26.36■■□□□ 1.81
UPF1-201ENST00000262803 DCAF1Q9Y4B6 1507 aa26.27■■□□□ 1.8
UPF1-201ENST00000262803 ARID3CA6NKF2 412 aa26.23■■□□□ 1.79
UPF1-201ENST00000262803 NPM1P06748 294 aaKnown RBP eCLIP26.21■■□□□ 1.79
UPF1-201ENST00000262803 ZCCHC6Q5VYS8 1495 aaKnown RBP26.2■■□□□ 1.79
UPF1-201ENST00000262803 SLC24A1O60721 1099 aa26.19■■□□□ 1.78
UPF1-201ENST00000262803 SCRIBQ14160 1630 aa26.11■■□□□ 1.77
UPF1-201ENST00000262803 ZNF777Q9ULD5 760 aaPredicted RBP26.09■■□□□ 1.77
UPF1-201ENST00000262803 STAG3Q9UJ98 1225 aa26.06■■□□□ 1.76
UPF1-201ENST00000262803 TONSLQ96HA7 1378 aa26.03■■□□□ 1.76
UPF1-201ENST00000262803 FKBP8Q14318 412 aa25.99■■□□□ 1.75
UPF1-201ENST00000262803 ANP32AP39687 249 aaKnown RBP25.97■■□□□ 1.75
UPF1-201ENST00000262803 DDX10Q13206 875 aaKnown RBP25.95■■□□□ 1.75
UPF1-201ENST00000262803 HNRNPUQ00839 825 aaKnown RBP eCLIP25.9■■□□□ 1.74
UPF1-201ENST00000262803 BCL11AQ9H165 835 aa25.87■■□□□ 1.73
UPF1-201ENST00000262803 NPM2Q86SE8 214 aaKnown RBP25.83■■□□□ 1.73
UPF1-201ENST00000262803 CHGAP10645 457 aaKnown RBP25.83■■□□□ 1.73
UPF1-201ENST00000262803 UPF2Q9HAU5 1272 aaKnown RBP25.82■■□□□ 1.72
UPF1-201ENST00000262803 ANP32BQ92688 251 aaKnown RBP25.81■■□□□ 1.72
UPF1-201ENST00000262803 FAM9BQ8IZU0 186 aa25.8■■□□□ 1.72
UPF1-201ENST00000262803 GOLGA6L2Q8N9W4 650 aaPredicted RBP25.76■■□□□ 1.71
UPF1-201ENST00000262803 TSPY4P0CV99 314 aa25.75■■□□□ 1.71
UPF1-201ENST00000262803 TSPY10P0CW01 314 aa25.75■■□□□ 1.71
UPF1-201ENST00000262803 CHIC2Q9UKJ5 165 aa25.73■■□□□ 1.71
UPF1-201ENST00000262803 MYO15BQ96JP2 1530 aa25.7■■□□□ 1.7
UPF1-201ENST00000262803 MIER1Q8N108 512 aa25.7■■□□□ 1.7
UPF1-201ENST00000262803 CLIP1P30622 1438 aa25.68■■□□□ 1.7
UPF1-201ENST00000262803 HSP90AA1P07900 732 aaKnown RBP25.66■■□□□ 1.7
UPF1-201ENST00000262803 SCAF1Q9H7N4 1312 aaKnown RBP25.66■■□□□ 1.7
UPF1-201ENST00000262803 SALL2Q9Y467 1007 aaPredicted RBP25.63■■□□□ 1.69
UPF1-201ENST00000262803 TMC1Q8TDI8 760 aa25.61■■□□□ 1.69
UPF1-201ENST00000262803 CCDC180Q9P1Z9 1646 aa25.61■■□□□ 1.69
UPF1-201ENST00000262803 CHMP7Q8WUX9 453 aaPredicted RBP25.6■■□□□ 1.69
UPF1-201ENST00000262803 MTUS2Q5JR59 1369 aa25.59■■□□□ 1.69
UPF1-201ENST00000262803 WDR43Q15061 677 aaKnown RBP eCLIP25.58■■□□□ 1.68
UPF1-201ENST00000262803 MRS2Q9HD23 443 aa25.57■■□□□ 1.68
UPF1-201ENST00000262803 CCDC136Q96JN2 1154 aa25.57■■□□□ 1.68
UPF1-201ENST00000262803 RSF1Q96T23 1441 aaPredicted RBP25.55■■□□□ 1.68
UPF1-201ENST00000262803 HIRIP3Q9BW71 556 aaPredicted RBP25.54■■□□□ 1.68
UPF1-201ENST00000262803 EEA1Q15075 1411 aa25.51■■□□□ 1.67
UPF1-201ENST00000262803 RB1CC1Q8TDY2 1594 aa25.51■■□□□ 1.67
UPF1-201ENST00000262803 CEP162Q5TB80 1403 aa25.5■■□□□ 1.67
UPF1-201ENST00000262803 GRWD1Q9BQ67 446 aaKnown RBP eCLIP25.5■■□□□ 1.679e-7■■■□□ 15.5
UPF1-201ENST00000262803 MYH16Q9H6N6 1097 aa25.47■■□□□ 1.67
UPF1-201ENST00000262803 KDM2AQ9Y2K7 1162 aa25.46■■□□□ 1.67
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms