RNA–Protein interactions for RNA: ENST00000418600.6

SYNGAP1-202, Transcript of synaptic Ras GTPase activating protein 1, humanhuman

TSL 5 BASIC

Gene SYNGAP1, Length 5,828 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNGAP1-202ENST00000418600 DCAF8L2P0C7V8 631 aa31.37■■■□□ 2.61
SYNGAP1-202ENST00000418600 NISCHQ9Y2I1 1504 aa29.98■■■□□ 2.39
SYNGAP1-202ENST00000418600 SHROOM4Q9ULL8 1493 aa28.31■■■□□ 2.12
SYNGAP1-202ENST00000418600 SUPT5HO00267 1087 aaKnown RBP28.27■■■□□ 2.12
SYNGAP1-202ENST00000418600 FAM9AQ8IZU1 332 aaPredicted RBP27.99■■■□□ 2.07
SYNGAP1-202ENST00000418600 EHMT2Q96KQ7 1210 aa27.47■■□□□ 1.99
SYNGAP1-202ENST00000418600 APLP2Q06481 763 aa27.19■■□□□ 1.94
SYNGAP1-202ENST00000418600 ABCC9O60706 1549 aa27.13■■□□□ 1.93
SYNGAP1-202ENST00000418600 ATP1B4Q9UN42 357 aaPredicted RBP26.83■■□□□ 1.89
SYNGAP1-202ENST00000418600 RANGAP1P46060 587 aaPredicted RBP26.81■■□□□ 1.88
SYNGAP1-202ENST00000418600 PABPN1Q86U42 306 aaKnown RBP eCLIP26.69■■□□□ 1.86
SYNGAP1-202ENST00000418600 TTBK1Q5TCY1 1321 aaPredicted RBP26.5■■□□□ 1.83
SYNGAP1-202ENST00000418600 MYT1LQ9UL68 1186 aa26.46■■□□□ 1.83
SYNGAP1-202ENST00000418600 TRIM41Q8WV44 630 aa26.38■■□□□ 1.81
SYNGAP1-202ENST00000418600 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP26.28■■□□□ 1.8
SYNGAP1-202ENST00000418600 HNRNPUL2Q1KMD3 747 aaKnown RBP26.28■■□□□ 1.8
SYNGAP1-202ENST00000418600 UBTFP17480 764 aaKnown RBP26.26■■□□□ 1.79
SYNGAP1-202ENST00000418600 PELP1Q8IZL8 1130 aaKnown RBP26■■□□□ 1.75
SYNGAP1-202ENST00000418600 FBLN2P98095 1184 aa25.92■■□□□ 1.74
SYNGAP1-202ENST00000418600 CHIC1Q5VXU3 224 aa25.73■■□□□ 1.71
SYNGAP1-202ENST00000418600 SCRIBQ14160 1630 aa25.37■■□□□ 1.65
SYNGAP1-202ENST00000418600 RB1CC1Q8TDY2 1594 aa25.32■■□□□ 1.64
SYNGAP1-202ENST00000418600 CCDC180Q9P1Z9 1646 aa25.25■■□□□ 1.63
SYNGAP1-202ENST00000418600 NPM1P06748 294 aaKnown RBP eCLIP25.25■■□□□ 1.63
SYNGAP1-202ENST00000418600 PCGF6Q9BYE7 350 aa25.22■■□□□ 1.63
SYNGAP1-202ENST00000418600 ITGAEP38570 1179 aa25.21■■□□□ 1.63
SYNGAP1-202ENST00000418600 ESF1Q9H501 851 aaKnown RBP25.08■■□□□ 1.61
SYNGAP1-202ENST00000418600 CCER1Q8TC90 406 aaPredicted RBP25.02■■□□□ 1.6
SYNGAP1-202ENST00000418600 BCANQ96GW7 911 aa25.01■■□□□ 1.59
SYNGAP1-202ENST00000418600 SLC4A1APQ9BWU0 796 aaKnown RBP25.01■■□□□ 1.59
SYNGAP1-202ENST00000418600 PLPPR3Q6T4P5 718 aa24.97■■□□□ 1.59
SYNGAP1-202ENST00000418600 PPARGC1BQ86YN6 1023 aaKnown RBP24.97■■□□□ 1.59
SYNGAP1-202ENST00000418600 ERCC6Q03468 1493 aa24.95■■□□□ 1.58
SYNGAP1-202ENST00000418600 POLR3GLQ9BT43 218 aa24.9■■□□□ 1.58
SYNGAP1-202ENST00000418600 ARID3CA6NKF2 412 aa24.88■■□□□ 1.57
SYNGAP1-202ENST00000418600 FAM50AQ14320 339 aaKnown RBP24.81■■□□□ 1.56
SYNGAP1-202ENST00000418600 CHMP7Q8WUX9 453 aaPredicted RBP24.8■■□□□ 1.56
SYNGAP1-202ENST00000418600 NACADO15069 1562 aa24.77■■□□□ 1.56
SYNGAP1-202ENST00000418600 TRIM52Q96A61 297 aa24.73■■□□□ 1.55
SYNGAP1-202ENST00000418600 ERICH6Q7L0X2 663 aa24.72■■□□□ 1.55
SYNGAP1-202ENST00000418600 P3H3Q8IVL6 736 aa24.71■■□□□ 1.55
SYNGAP1-202ENST00000418600 CDK11AQ9UQ88 783 aaPredicted RBP24.69■■□□□ 1.54
SYNGAP1-202ENST00000418600 ZNF777Q9ULD5 760 aaPredicted RBP24.64■■□□□ 1.54
SYNGAP1-202ENST00000418600 ZCCHC6Q5VYS8 1495 aaKnown RBP24.63■■□□□ 1.53
SYNGAP1-202ENST00000418600 TRHP20396 242 aaPredicted RBP24.6■■□□□ 1.53
SYNGAP1-202ENST00000418600 STAG3Q9UJ98 1225 aa24.59■■□□□ 1.53
SYNGAP1-202ENST00000418600 CENPBP07199 599 aaPredicted RBP24.52■■□□□ 1.52
SYNGAP1-202ENST00000418600 ZEB1P37275 1124 aaPredicted RBP24.48■■□□□ 1.51
SYNGAP1-202ENST00000418600 BAZ1BQ9UIG0 1483 aaKnown RBP24.42■■□□□ 1.5
SYNGAP1-202ENST00000418600 CNGB1Q14028 1251 aaPredicted RBP24.39■■□□□ 1.49
SYNGAP1-202ENST00000418600 LOC105371045A0A1W2PR82 267 aa24.35■■□□□ 1.49
SYNGAP1-202ENST00000418600 ARID4BQ4LE39 1312 aaPredicted RBP24.34■■□□□ 1.49
SYNGAP1-202ENST00000418600 CHGAP10645 457 aaKnown RBP24.3■■□□□ 1.48
SYNGAP1-202ENST00000418600 ZNF326Q5BKZ1 582 aaKnown RBP24.28■■□□□ 1.48
SYNGAP1-202ENST00000418600 NEFLP07196 543 aa24.27■■□□□ 1.48
SYNGAP1-202ENST00000418600 CSRNP3Q8WYN3 585 aa24.22■■□□□ 1.47
SYNGAP1-202ENST00000418600 KCNH8Q96L42 1107 aa24.2■■□□□ 1.47
SYNGAP1-202ENST00000418600 SLC24A1O60721 1099 aa24.19■■□□□ 1.46
SYNGAP1-202ENST00000418600 TRIM26Q12899 539 aaPredicted RBP24.08■■□□□ 1.44
SYNGAP1-202ENST00000418600 SCAF1Q9H7N4 1312 aaKnown RBP24.06■■□□□ 1.44
SYNGAP1-202ENST00000418600 NEUROD1Q13562 356 aa24.05■■□□□ 1.44
SYNGAP1-202ENST00000418600 CECR2Q9BXF3 1484 aa24.02■■□□□ 1.44
SYNGAP1-202ENST00000418600 GRWD1Q9BQ67 446 aaKnown RBP eCLIP24.01■■□□□ 1.431e-6■■■■□ 21.3
SYNGAP1-202ENST00000418600 C14orf37Q86TY3 774 aa23.99■■□□□ 1.43
SYNGAP1-202ENST00000418600 PDS5BQ9NTI5 1447 aa23.96■■□□□ 1.43
SYNGAP1-202ENST00000418600 NEFMP07197 916 aa23.95■■□□□ 1.42
SYNGAP1-202ENST00000418600 PLEKHD1A6NEE1 506 aa23.94■■□□□ 1.42
SYNGAP1-202ENST00000418600 AEBP2Q6ZN18 517 aaPredicted RBP23.94■■□□□ 1.42
SYNGAP1-202ENST00000418600 TSPY4P0CV99 314 aa23.93■■□□□ 1.42
SYNGAP1-202ENST00000418600 TSPY10P0CW01 314 aa23.93■■□□□ 1.42
SYNGAP1-202ENST00000418600 PPP1R15AO75807 674 aaPredicted RBP23.93■■□□□ 1.42
SYNGAP1-202ENST00000418600 BAZ1AQ9NRL2 1556 aaPredicted RBP23.83■■□□□ 1.4
SYNGAP1-202ENST00000418600 YTHDC1Q96MU7 727 aaKnown RBP23.82■■□□□ 1.4
SYNGAP1-202ENST00000418600 DAXXQ9UER7 740 aaPredicted RBP23.81■■□□□ 1.4
SYNGAP1-202ENST00000418600 A0A0G2JS52 829 aa23.78■■□□□ 1.4
SYNGAP1-202ENST00000418600 HAP1P54257 671 aaPredicted RBP23.78■■□□□ 1.4
SYNGAP1-202ENST00000418600 SMARCA2P51531 1590 aa23.75■■□□□ 1.39
SYNGAP1-202ENST00000418600 MTUS2Q5JR59 1369 aa23.75■■□□□ 1.39
SYNGAP1-202ENST00000418600 EIF4G1Q04637 1599 aaKnown RBP23.69■■□□□ 1.38
SYNGAP1-202ENST00000418600 CHIC2Q9UKJ5 165 aa23.69■■□□□ 1.38
SYNGAP1-202ENST00000418600 MYT1Q01538 1121 aa23.67■■□□□ 1.38
SYNGAP1-202ENST00000418600 SENP3Q9H4L4 574 aaPredicted RBP23.66■■□□□ 1.38
SYNGAP1-202ENST00000418600 ZBTB7CA1YPR0 619 aa23.65■■□□□ 1.38
SYNGAP1-202ENST00000418600 PLEKHG5O94827 1062 aa23.65■■□□□ 1.38
SYNGAP1-202ENST00000418600 KIF27Q86VH2 1401 aa23.65■■□□□ 1.38
SYNGAP1-202ENST00000418600 MLECQ14165 292 aa23.62■■□□□ 1.37
SYNGAP1-202ENST00000418600 WRNQ14191 1432 aaPredicted RBP eCLIP23.61■■□□□ 1.371e-7■■■■■ 66.8
SYNGAP1-202ENST00000418600 DCAF1Q9Y4B6 1507 aa23.59■■□□□ 1.37
SYNGAP1-202ENST00000418600 RSF1Q96T23 1441 aaPredicted RBP23.59■■□□□ 1.37
SYNGAP1-202ENST00000418600 ZBTB47Q9UFB7 747 aaPredicted RBP23.57■■□□□ 1.36
SYNGAP1-202ENST00000418600 OSCARQ8IYS5 282 aa23.51■■□□□ 1.35
SYNGAP1-202ENST00000418600 CARMIL2Q6F5E8 1435 aa23.48■■□□□ 1.35
SYNGAP1-202ENST00000418600 CFDP1Q9UEE9 299 aaPredicted RBP23.48■■□□□ 1.35
SYNGAP1-202ENST00000418600 CEP164Q9UPV0 1460 aa23.44■■□□□ 1.34
SYNGAP1-202ENST00000418600 CUX2O14529 1486 aa23.42■■□□□ 1.34
SYNGAP1-202ENST00000418600 CYB5RLQ6IPT4 315 aa23.41■■□□□ 1.34
SYNGAP1-202ENST00000418600 SOGA1O94964 1423 aa23.41■■□□□ 1.34
SYNGAP1-202ENST00000418600 NPM2Q86SE8 214 aaKnown RBP23.4■■□□□ 1.34
SYNGAP1-202ENST00000418600 CLSPNQ9HAW4 1339 aa23.4■■□□□ 1.34
SYNGAP1-202ENST00000418600 CANXP27824 592 aaKnown RBP23.38■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms