Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
DEPDC4Q8N2C3 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.9
DEPDC4Q8N2C3 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
DEPDC4Q8N2C3 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC20.64■□□□□ 0.89
DEPDC4Q8N2C3 AC103724.3-201ENST00000564481 992 ntBASIC20.64■□□□□ 0.89
DEPDC4Q8N2C3 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
DEPDC4Q8N2C3 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC20.64■□□□□ 0.89
DEPDC4Q8N2C3 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.89
DEPDC4Q8N2C3 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC20.64■□□□□ 0.89
DEPDC4Q8N2C3 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
DEPDC4Q8N2C3 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC20.63■□□□□ 0.89
DEPDC4Q8N2C3 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
DEPDC4Q8N2C3 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
DEPDC4Q8N2C3 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
DEPDC4Q8N2C3 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC20.63■□□□□ 0.89
DEPDC4Q8N2C3 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
DEPDC4Q8N2C3 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
DEPDC4Q8N2C3 GPRC5B-202ENST00000535671 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
DEPDC4Q8N2C3 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
DEPDC4Q8N2C3 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
DEPDC4Q8N2C3 TRIR-205ENST00000592273 783 ntTSL 3 BASIC20.63■□□□□ 0.89
DEPDC4Q8N2C3 WWC2-AS2-201ENST00000578387 2183 ntBASIC20.63■□□□□ 0.89
DEPDC4Q8N2C3 GCA-201ENST00000233612 1694 ntTSL 2 BASIC20.63■□□□□ 0.89
DEPDC4Q8N2C3 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC20.63■□□□□ 0.89
DEPDC4Q8N2C3 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
DEPDC4Q8N2C3 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
DEPDC4Q8N2C3 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
DEPDC4Q8N2C3 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC20.62■□□□□ 0.89
DEPDC4Q8N2C3 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
DEPDC4Q8N2C3 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
DEPDC4Q8N2C3 AC009299.2-201ENST00000482477 511 ntBASIC20.62■□□□□ 0.89
DEPDC4Q8N2C3 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC20.62■□□□□ 0.89
DEPDC4Q8N2C3 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC20.62■□□□□ 0.89
DEPDC4Q8N2C3 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
DEPDC4Q8N2C3 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
DEPDC4Q8N2C3 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
DEPDC4Q8N2C3 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
DEPDC4Q8N2C3 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC20.62■□□□□ 0.89
DEPDC4Q8N2C3 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
DEPDC4Q8N2C3 DUSP22-201ENST00000344450 1485 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
DEPDC4Q8N2C3 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
DEPDC4Q8N2C3 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
DEPDC4Q8N2C3 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
DEPDC4Q8N2C3 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC20.61■□□□□ 0.89
DEPDC4Q8N2C3 H19-210ENST00000439725 1929 ntTSL 2 BASIC20.61■□□□□ 0.89
DEPDC4Q8N2C3 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC20.61■□□□□ 0.89
DEPDC4Q8N2C3 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
DEPDC4Q8N2C3 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC20.61■□□□□ 0.89
DEPDC4Q8N2C3 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC20.61■□□□□ 0.89
DEPDC4Q8N2C3 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC20.61■□□□□ 0.89
DEPDC4Q8N2C3 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC20.61■□□□□ 0.89
DEPDC4Q8N2C3 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC20.61■□□□□ 0.89
DEPDC4Q8N2C3 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
DEPDC4Q8N2C3 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC20.6■□□□□ 0.89
DEPDC4Q8N2C3 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
DEPDC4Q8N2C3 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
DEPDC4Q8N2C3 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
DEPDC4Q8N2C3 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
DEPDC4Q8N2C3 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC20.6■□□□□ 0.89
DEPDC4Q8N2C3 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
DEPDC4Q8N2C3 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
DEPDC4Q8N2C3 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
DEPDC4Q8N2C3 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
DEPDC4Q8N2C3 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
DEPDC4Q8N2C3 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC20.59■□□□□ 0.89
DEPDC4Q8N2C3 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC20.59■□□□□ 0.89
DEPDC4Q8N2C3 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
DEPDC4Q8N2C3 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC20.59■□□□□ 0.89
DEPDC4Q8N2C3 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC20.59■□□□□ 0.89
DEPDC4Q8N2C3 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
DEPDC4Q8N2C3 TK2-216ENST00000564917 1156 ntTSL 3 BASIC20.59■□□□□ 0.89
DEPDC4Q8N2C3 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
DEPDC4Q8N2C3 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC20.59■□□□□ 0.89
DEPDC4Q8N2C3 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
DEPDC4Q8N2C3 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.89
DEPDC4Q8N2C3 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
DEPDC4Q8N2C3 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC20.58■□□□□ 0.89
DEPDC4Q8N2C3 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
DEPDC4Q8N2C3 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
DEPDC4Q8N2C3 AL022069.1-201ENST00000568025 1636 ntBASIC20.58■□□□□ 0.89
DEPDC4Q8N2C3 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.89
DEPDC4Q8N2C3 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
DEPDC4Q8N2C3 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC20.58■□□□□ 0.89
DEPDC4Q8N2C3 ADAMTS13-203ENST00000371910 1074 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
DEPDC4Q8N2C3 AL592295.1-201ENST00000400984 884 ntBASIC20.58■□□□□ 0.89
DEPDC4Q8N2C3 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC20.58■□□□□ 0.89
DEPDC4Q8N2C3 SSSCA1-AS1-201ENST00000567594 614 ntBASIC20.58■□□□□ 0.89
DEPDC4Q8N2C3 CTAG1A-202ENST00000599837 748 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
DEPDC4Q8N2C3 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.89
DEPDC4Q8N2C3 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
DEPDC4Q8N2C3 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
DEPDC4Q8N2C3 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.88
DEPDC4Q8N2C3 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.88
DEPDC4Q8N2C3 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
DEPDC4Q8N2C3 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
DEPDC4Q8N2C3 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC20.57■□□□□ 0.88
DEPDC4Q8N2C3 PRTG-204ENST00000561292 833 ntTSL 3 BASIC20.57■□□□□ 0.88
DEPDC4Q8N2C3 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC20.57■□□□□ 0.88
DEPDC4Q8N2C3 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC20.57■□□□□ 0.88
DEPDC4Q8N2C3 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 15.9 ms