RNA–Protein interactions for RNA: ENST00000302085.8

SMAD1-201, Transcript of SMAD family member 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMAD1, Length 1,966 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD1-201ENST00000302085 NISCHQ9Y2I1 1504 aa49.86■■■■■ 5.57
SMAD1-201ENST00000302085 CCDC180Q9P1Z9 1646 aa43.22■■■■■ 4.51
SMAD1-201ENST00000302085 ZCCHC6Q5VYS8 1495 aaKnown RBP41.91■■■■■ 4.3
SMAD1-201ENST00000302085 DCAF8L2P0C7V8 631 aa41.24■■■■■ 4.19
SMAD1-201ENST00000302085 DCAF1Q9Y4B6 1507 aa41.15■■■■■ 4.18
SMAD1-201ENST00000302085 SHROOM4Q9ULL8 1493 aa41■■■■■ 4.15
SMAD1-201ENST00000302085 ABCC9O60706 1549 aa40.79■■■■■ 4.12
SMAD1-201ENST00000302085 MYO15BQ96JP2 1530 aa40.53■■■■■ 4.08
SMAD1-201ENST00000302085 NACADO15069 1562 aa40.24■■■■■ 4.03
SMAD1-201ENST00000302085 SCRIBQ14160 1630 aa39.91■■■■□ 3.98
SMAD1-201ENST00000302085 RB1CC1Q8TDY2 1594 aa39.82■■■■□ 3.97
SMAD1-201ENST00000302085 SUPT5HO00267 1087 aaKnown RBP39.61■■■■□ 3.93
SMAD1-201ENST00000302085 UNC13AQ9UPW8 1703 aa39.07■■■■□ 3.84
SMAD1-201ENST00000302085 RSF1Q96T23 1441 aaPredicted RBP38.84■■■■□ 3.81
SMAD1-201ENST00000302085 CECR2Q9BXF3 1484 aa38.81■■■■□ 3.8
SMAD1-201ENST00000302085 BICRAQ9NZM4 1560 aa38.7■■■■□ 3.79
SMAD1-201ENST00000302085 PABPN1Q86U42 306 aaKnown RBP eCLIP38.62■■■■□ 3.77
SMAD1-201ENST00000302085 MROH2BQ7Z745 1585 aa38.58■■■■□ 3.77
SMAD1-201ENST00000302085 BAZ1AQ9NRL2 1556 aaPredicted RBP38.43■■■■□ 3.74
SMAD1-201ENST00000302085 WIZO95785 1651 aa38.27■■■■□ 3.72
SMAD1-201ENST00000302085 SMARCA4P51532 1647 aa38.24■■■■□ 3.71
SMAD1-201ENST00000302085 CHIC1Q5VXU3 224 aa38.06■■■■□ 3.68
SMAD1-201ENST00000302085 TOP2AP11388 1531 aaKnown RBP37.81■■■■□ 3.64
SMAD1-201ENST00000302085 PEG3Q9GZU2 1588 aa37.73■■■■□ 3.63
SMAD1-201ENST00000302085 ATAD2BQ9ULI0 1458 aa37.58■■■■□ 3.61
SMAD1-201ENST00000302085 CCDC88BA6NC98 1476 aa37.52■■■■□ 3.6
SMAD1-201ENST00000302085 SMARCA2P51531 1590 aa37.5■■■■□ 3.59
SMAD1-201ENST00000302085 EIF4G1Q04637 1599 aaKnown RBP37.48■■■■□ 3.59
SMAD1-201ENST00000302085 BAZ1BQ9UIG0 1483 aaKnown RBP37.35■■■■□ 3.57
SMAD1-201ENST00000302085 NCAPD3P42695 1498 aa37.2■■■■□ 3.55
SMAD1-201ENST00000302085 TRIM41Q8WV44 630 aa37.17■■■■□ 3.54
SMAD1-201ENST00000302085 HMGXB3Q12766 1538 aa37.1■■■■□ 3.53
SMAD1-201ENST00000302085 CC2D2AQ9P2K1 1620 aa36.87■■■■□ 3.49
SMAD1-201ENST00000302085 ABCC8Q09428 1581 aa36.82■■■■□ 3.48
SMAD1-201ENST00000302085 LOC105371045A0A1W2PR82 267 aa36.69■■■■□ 3.46
SMAD1-201ENST00000302085 FAM9AQ8IZU1 332 aaPredicted RBP36.57■■■■□ 3.45
SMAD1-201ENST00000302085 WRNQ14191 1432 aaPredicted RBP eCLIP36.51■■■■□ 3.44
SMAD1-201ENST00000302085 CFTRP13569 1480 aa36.45■■■■□ 3.43
SMAD1-201ENST00000302085 SYNJ1O43426 1573 aa36.36■■■■□ 3.41
SMAD1-201ENST00000302085 CADPSQ9ULU8 1353 aa36.29■■■■□ 3.4
SMAD1-201ENST00000302085 SOGA1O94964 1423 aa36.22■■■■□ 3.39
SMAD1-201ENST00000302085 PRDM2Q13029 1718 aa36.16■■■■□ 3.38
SMAD1-201ENST00000302085 TOP2BQ02880 1626 aa36.15■■■■□ 3.38
SMAD1-201ENST00000302085 RUSC2Q8N2Y8 1516 aa36.1■■■■□ 3.37
SMAD1-201ENST00000302085 EHMT2Q96KQ7 1210 aa36.09■■■■□ 3.37
SMAD1-201ENST00000302085 BIVM-ERCC5R4GMW8 1640 aa36.08■■■■□ 3.37
SMAD1-201ENST00000302085 EEA1Q15075 1411 aa36.07■■■■□ 3.37
SMAD1-201ENST00000302085 DNAJC5BQ9UF47 199 aa36.07■■■■□ 3.36
SMAD1-201ENST00000302085 CUX1P39880 1505 aa36.03■■■■□ 3.36
SMAD1-201ENST00000302085 CSRNP3Q8WYN3 585 aa35.98■■■■□ 3.35
SMAD1-201ENST00000302085 NESP48681 1621 aa35.93■■■■□ 3.34
SMAD1-201ENST00000302085 FANCD2Q9BXW9 1451 aa35.88■■■■□ 3.33
SMAD1-201ENST00000302085 LAMC3Q9Y6N6 1575 aa35.82■■■■□ 3.32
SMAD1-201ENST00000302085 GOLGA3Q08378 1498 aa35.62■■■■□ 3.29
SMAD1-201ENST00000302085 TNIKQ9UKE5 1360 aa35.61■■■■□ 3.29
SMAD1-201ENST00000302085 KIF21BO75037 1637 aa35.6■■■■□ 3.29
SMAD1-201ENST00000302085 CEP164Q9UPV0 1460 aa35.59■■■■□ 3.29
SMAD1-201ENST00000302085 FGD5Q6ZNL6 1462 aa35.59■■■■□ 3.29
SMAD1-201ENST00000302085 PDS5BQ9NTI5 1447 aa35.58■■■■□ 3.29
SMAD1-201ENST00000302085 DNMBPQ6XZF7 1577 aa35.56■■■■□ 3.28
SMAD1-201ENST00000302085 UBTFP17480 764 aaKnown RBP35.55■■■■□ 3.28
SMAD1-201ENST00000302085 KIF27Q86VH2 1401 aa35.55■■■■□ 3.28
SMAD1-201ENST00000302085 TOPBP1Q92547 1522 aa35.52■■■■□ 3.28
SMAD1-201ENST00000302085 RAPGEF2Q9Y4G8 1499 aa35.44■■■■□ 3.26
SMAD1-201ENST00000302085 URB2Q14146 1524 aaKnown RBP35.44■■■■□ 3.26
SMAD1-201ENST00000302085 CEP162Q5TB80 1403 aa35.44■■■■□ 3.26
SMAD1-201ENST00000302085 CUX2O14529 1486 aa35.42■■■■□ 3.26
SMAD1-201ENST00000302085 KIF21AQ7Z4S6 1674 aa35.41■■■■□ 3.26
SMAD1-201ENST00000302085 PRXQ9BXM0 1461 aa35.4■■■■□ 3.26
SMAD1-201ENST00000302085 POLA1P09884 1462 aaPredicted RBP35.37■■■■□ 3.25
SMAD1-201ENST00000302085 RAD54L2Q9Y4B4 1467 aa35.32■■■■□ 3.25
SMAD1-201ENST00000302085 ERICH3Q5RHP9 1530 aa35.3■■■■□ 3.24
SMAD1-201ENST00000302085 IGF1RP08069 1367 aa35.28■■■■□ 3.24
SMAD1-201ENST00000302085 ABCA10Q8WWZ4 1543 aa35.26■■■■□ 3.23
SMAD1-201ENST00000302085 PCGF6Q9BYE7 350 aa35.24■■■■□ 3.23
SMAD1-201ENST00000302085 TRIM26Q12899 539 aaPredicted RBP35.12■■■■□ 3.21
SMAD1-201ENST00000302085 MRC2Q9UBG0 1479 aa35.11■■■■□ 3.21
SMAD1-201ENST00000302085 CLIP1P30622 1438 aa35.1■■■■□ 3.21
SMAD1-201ENST00000302085 CARMIL1Q5VZK9 1371 aa35.08■■■■□ 3.21
SMAD1-201ENST00000302085 WDR97A6NE52 1622 aa35.07■■■■□ 3.2
SMAD1-201ENST00000302085 TDRD9Q8NDG6 1382 aaKnown RBP34.97■■■■□ 3.19
SMAD1-201ENST00000302085 RANGAP1P46060 587 aaPredicted RBP34.96■■■■□ 3.19
SMAD1-201ENST00000302085 PPARGC1BQ86YN6 1023 aaKnown RBP34.95■■■■□ 3.19
SMAD1-201ENST00000302085 TARBP1Q13395 1621 aaKnown RBP34.95■■■■□ 3.19
SMAD1-201ENST00000302085 ABCA5Q8WWZ7 1642 aa34.92■■■■□ 3.18
SMAD1-201ENST00000302085 WDR62O43379 1518 aa34.89■■■■□ 3.18
SMAD1-201ENST00000302085 ERCC6Q03468 1493 aa34.88■■■■□ 3.17
SMAD1-201ENST00000302085 GAPVD1Q14C86 1478 aa34.87■■■■□ 3.17
SMAD1-201ENST00000302085 CUL7Q14999 1698 aa34.84■■■■□ 3.17
SMAD1-201ENST00000302085 VPS8Q8N3P4 1428 aa34.81■■■■□ 3.16
SMAD1-201ENST00000302085 ARAP1Q96P48 1450 aa34.74■■■■□ 3.15
SMAD1-201ENST00000302085 THOC2Q8NI27 1593 aaKnown RBP34.72■■■■□ 3.15
SMAD1-201ENST00000302085 IFT140Q96RY7 1462 aa34.72■■■■□ 3.15
SMAD1-201ENST00000302085 AQRO60306 1485 aaKnown RBP eCLIP34.69■■■■□ 3.14
SMAD1-201ENST00000302085 ARHGAP35Q9NRY4 1499 aa34.68■■■■□ 3.14
SMAD1-201ENST00000302085 ZNF608Q9ULD9 1512 aaPredicted RBP34.61■■■■□ 3.13
SMAD1-201ENST00000302085 PBRM1Q86U86 1689 aa34.59■■■■□ 3.13
SMAD1-201ENST00000302085 TTBK1Q5TCY1 1321 aaPredicted RBP34.58■■■■□ 3.13
SMAD1-201ENST00000302085 GRIN2BQ13224 1484 aa34.54■■■■□ 3.12
SMAD1-201ENST00000302085 FHAD1B1AJZ9 1412 aa34.5■■■■□ 3.11
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms