RNA–Protein interactions for RNA: ENST00000233612.8

GCA-201, Transcript of grancalcin, humanhuman

TSL 2 BASIC

Gene GCA, Length 1,694 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GCA-201ENST00000233612 NISCHQ9Y2I1 1504 aa49.58■■■■■ 5.53
GCA-201ENST00000233612 CCDC180Q9P1Z9 1646 aa43.09■■■■■ 4.49
GCA-201ENST00000233612 ZCCHC6Q5VYS8 1495 aaKnown RBP41.7■■■■■ 4.27
GCA-201ENST00000233612 DCAF1Q9Y4B6 1507 aa41.09■■■■■ 4.17
GCA-201ENST00000233612 DCAF8L2P0C7V8 631 aa40.65■■■■■ 4.1
GCA-201ENST00000233612 MYO15BQ96JP2 1530 aa40.51■■■■■ 4.08
GCA-201ENST00000233612 SHROOM4Q9ULL8 1493 aa40.46■■■■■ 4.07
GCA-201ENST00000233612 ABCC9O60706 1549 aa40.3■■■■■ 4.04
GCA-201ENST00000233612 NACADO15069 1562 aa40.07■■■■■ 4
GCA-201ENST00000233612 RB1CC1Q8TDY2 1594 aa39.59■■■■□ 3.93
GCA-201ENST00000233612 SCRIBQ14160 1630 aa39.53■■■■□ 3.92
GCA-201ENST00000233612 SUPT5HO00267 1087 aaKnown RBP39.15■■■■□ 3.86
GCA-201ENST00000233612 UNC13AQ9UPW8 1703 aa38.79■■■■□ 3.8
GCA-201ENST00000233612 RSF1Q96T23 1441 aaPredicted RBP38.58■■■■□ 3.77
GCA-201ENST00000233612 CECR2Q9BXF3 1484 aa38.44■■■■□ 3.74
GCA-201ENST00000233612 BICRAQ9NZM4 1560 aa38.41■■■■□ 3.74
GCA-201ENST00000233612 MROH2BQ7Z745 1585 aa38.27■■■■□ 3.72
GCA-201ENST00000233612 BAZ1AQ9NRL2 1556 aaPredicted RBP38.24■■■■□ 3.71
GCA-201ENST00000233612 PABPN1Q86U42 306 aaKnown RBP eCLIP38.07■■■■□ 3.69
GCA-201ENST00000233612 SMARCA4P51532 1647 aa38■■■■□ 3.67
GCA-201ENST00000233612 WIZO95785 1651 aa37.95■■■■□ 3.67
GCA-201ENST00000233612 CHIC1Q5VXU3 224 aa37.78■■■■□ 3.64
GCA-201ENST00000233612 PEG3Q9GZU2 1588 aa37.63■■■■□ 3.61
GCA-201ENST00000233612 TOP2AP11388 1531 aaKnown RBP37.61■■■■□ 3.61
GCA-201ENST00000233612 ATAD2BQ9ULI0 1458 aa37.33■■■■□ 3.57
GCA-201ENST00000233612 SMARCA2P51531 1590 aa37.31■■■■□ 3.56
GCA-201ENST00000233612 CCDC88BA6NC98 1476 aa37.24■■■■□ 3.55
GCA-201ENST00000233612 EIF4G1Q04637 1599 aaKnown RBP37.19■■■■□ 3.54
GCA-201ENST00000233612 BAZ1BQ9UIG0 1483 aaKnown RBP37.08■■■■□ 3.53
GCA-201ENST00000233612 NCAPD3P42695 1498 aa37■■■■□ 3.51
GCA-201ENST00000233612 HMGXB3Q12766 1538 aa36.94■■■■□ 3.5
GCA-201ENST00000233612 TRIM41Q8WV44 630 aa36.86■■■■□ 3.49
GCA-201ENST00000233612 CC2D2AQ9P2K1 1620 aa36.55■■■■□ 3.44
GCA-201ENST00000233612 ABCC8Q09428 1581 aa36.47■■■■□ 3.43
GCA-201ENST00000233612 WRNQ14191 1432 aaPredicted RBP eCLIP36.27■■■■□ 3.4
GCA-201ENST00000233612 LOC105371045A0A1W2PR82 267 aa36.27■■■■□ 3.4
GCA-201ENST00000233612 CFTRP13569 1480 aa36.25■■■■□ 3.39
GCA-201ENST00000233612 SYNJ1O43426 1573 aa36.08■■■■□ 3.37
GCA-201ENST00000233612 FAM9AQ8IZU1 332 aaPredicted RBP36.07■■■■□ 3.37
GCA-201ENST00000233612 PRDM2Q13029 1718 aa36.05■■■■□ 3.36
GCA-201ENST00000233612 CADPSQ9ULU8 1353 aa36.04■■■■□ 3.36
GCA-201ENST00000233612 EEA1Q15075 1411 aa36.01■■■■□ 3.35
GCA-201ENST00000233612 TOP2BQ02880 1626 aa35.97■■■■□ 3.35
GCA-201ENST00000233612 BIVM-ERCC5R4GMW8 1640 aa35.93■■■■□ 3.34
GCA-201ENST00000233612 SOGA1O94964 1423 aa35.9■■■■□ 3.34
GCA-201ENST00000233612 CUX1P39880 1505 aa35.75■■■■□ 3.31
GCA-201ENST00000233612 RUSC2Q8N2Y8 1516 aa35.74■■■■□ 3.31
GCA-201ENST00000233612 CSRNP3Q8WYN3 585 aa35.74■■■■□ 3.31
GCA-201ENST00000233612 LAMC3Q9Y6N6 1575 aa35.64■■■■□ 3.3
GCA-201ENST00000233612 FANCD2Q9BXW9 1451 aa35.58■■■■□ 3.29
GCA-201ENST00000233612 NESP48681 1621 aa35.51■■■■□ 3.27
GCA-201ENST00000233612 DNAJC5BQ9UF47 199 aa35.48■■■■□ 3.27
GCA-201ENST00000233612 KIF21BO75037 1637 aa35.48■■■■□ 3.27
GCA-201ENST00000233612 TNIKQ9UKE5 1360 aa35.46■■■■□ 3.27
GCA-201ENST00000233612 GOLGA3Q08378 1498 aa35.45■■■■□ 3.26
GCA-201ENST00000233612 EHMT2Q96KQ7 1210 aa35.44■■■■□ 3.26
GCA-201ENST00000233612 CEP164Q9UPV0 1460 aa35.43■■■■□ 3.26
GCA-201ENST00000233612 DNMBPQ6XZF7 1577 aa35.35■■■■□ 3.25
GCA-201ENST00000233612 PDS5BQ9NTI5 1447 aa35.35■■■■□ 3.25
GCA-201ENST00000233612 KIF27Q86VH2 1401 aa35.34■■■■□ 3.25
GCA-201ENST00000233612 FGD5Q6ZNL6 1462 aa35.29■■■■□ 3.24
GCA-201ENST00000233612 TOPBP1Q92547 1522 aa35.26■■■■□ 3.23
GCA-201ENST00000233612 PRXQ9BXM0 1461 aa35.23■■■■□ 3.23
GCA-201ENST00000233612 CEP162Q5TB80 1403 aa35.21■■■■□ 3.23
GCA-201ENST00000233612 UBTFP17480 764 aaKnown RBP35.21■■■■□ 3.23
GCA-201ENST00000233612 ERICH3Q5RHP9 1530 aa35.2■■■■□ 3.23
GCA-201ENST00000233612 RAPGEF2Q9Y4G8 1499 aa35.16■■■■□ 3.22
GCA-201ENST00000233612 URB2Q14146 1524 aaKnown RBP35.13■■■■□ 3.21
GCA-201ENST00000233612 CUX2O14529 1486 aa35.12■■■■□ 3.21
GCA-201ENST00000233612 POLA1P09884 1462 aaPredicted RBP35.1■■■■□ 3.21
GCA-201ENST00000233612 KIF21AQ7Z4S6 1674 aa35.1■■■■□ 3.21
GCA-201ENST00000233612 ABCA10Q8WWZ4 1543 aa35.07■■■■□ 3.2
GCA-201ENST00000233612 IGF1RP08069 1367 aa35.04■■■■□ 3.2
GCA-201ENST00000233612 TRIM26Q12899 539 aaPredicted RBP34.96■■■■□ 3.19
GCA-201ENST00000233612 RAD54L2Q9Y4B4 1467 aa34.95■■■■□ 3.19
GCA-201ENST00000233612 PCGF6Q9BYE7 350 aa34.93■■■■□ 3.18
GCA-201ENST00000233612 WDR97A6NE52 1622 aa34.89■■■■□ 3.18
GCA-201ENST00000233612 CLIP1P30622 1438 aa34.87■■■■□ 3.17
GCA-201ENST00000233612 MRC2Q9UBG0 1479 aa34.84■■■■□ 3.17
GCA-201ENST00000233612 CARMIL1Q5VZK9 1371 aa34.83■■■■□ 3.17
GCA-201ENST00000233612 TARBP1Q13395 1621 aaKnown RBP34.72■■■■□ 3.15
GCA-201ENST00000233612 ABCA5Q8WWZ7 1642 aa34.72■■■■□ 3.15
GCA-201ENST00000233612 CUL7Q14999 1698 aa34.7■■■■□ 3.14
GCA-201ENST00000233612 WDR62O43379 1518 aa34.68■■■■□ 3.14
GCA-201ENST00000233612 VPS8Q8N3P4 1428 aa34.65■■■■□ 3.14
GCA-201ENST00000233612 GAPVD1Q14C86 1478 aa34.62■■■■□ 3.13
GCA-201ENST00000233612 TDRD9Q8NDG6 1382 aaKnown RBP34.59■■■■□ 3.13
GCA-201ENST00000233612 ERCC6Q03468 1493 aa34.5■■■■□ 3.11
GCA-201ENST00000233612 IFT140Q96RY7 1462 aa34.5■■■■□ 3.11
GCA-201ENST00000233612 ARAP1Q96P48 1450 aa34.5■■■■□ 3.11
GCA-201ENST00000233612 THOC2Q8NI27 1593 aaKnown RBP34.46■■■■□ 3.11
GCA-201ENST00000233612 ARHGAP35Q9NRY4 1499 aa34.45■■■■□ 3.1
GCA-201ENST00000233612 PPARGC1BQ86YN6 1023 aaKnown RBP34.42■■■■□ 3.1
GCA-201ENST00000233612 RANGAP1P46060 587 aaPredicted RBP34.39■■■■□ 3.1
GCA-201ENST00000233612 PBRM1Q86U86 1689 aa34.37■■■■□ 3.09
GCA-201ENST00000233612 CTTNBP2Q8WZ74 1663 aa34.32■■■■□ 3.09
GCA-201ENST00000233612 AQRO60306 1485 aaKnown RBP eCLIP34.31■■■■□ 3.08
GCA-201ENST00000233612 GRIN2BQ13224 1484 aa34.31■■■■□ 3.08
GCA-201ENST00000233612 FHAD1B1AJZ9 1412 aa34.28■■■■□ 3.08
GCA-201ENST00000233612 HRCP23327 699 aa34.28■■■■□ 3.08
Retrieved 100 of 20,778 RNA–protein pairs in 9.4 ms