RNA–Protein interactions for RNA: ENST00000260653.4

SIX3-201, Transcript of SIX homeobox 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SIX3, Length 2,523 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3-201ENST00000260653 NISCHQ9Y2I1 1504 aa50.37■■■■■ 5.65
SIX3-201ENST00000260653 CCDC180Q9P1Z9 1646 aa43.79■■■■■ 4.6
SIX3-201ENST00000260653 ZCCHC6Q5VYS8 1495 aaKnown RBP42.35■■■■■ 4.37
SIX3-201ENST00000260653 DCAF8L2P0C7V8 631 aa41.67■■■■■ 4.26
SIX3-201ENST00000260653 DCAF1Q9Y4B6 1507 aa41.56■■■■■ 4.24
SIX3-201ENST00000260653 ABCC9O60706 1549 aa41.43■■■■■ 4.22
SIX3-201ENST00000260653 SHROOM4Q9ULL8 1493 aa41.36■■■■■ 4.21
SIX3-201ENST00000260653 MYO15BQ96JP2 1530 aa40.99■■■■■ 4.15
SIX3-201ENST00000260653 NACADO15069 1562 aa40.75■■■■■ 4.11
SIX3-201ENST00000260653 SCRIBQ14160 1630 aa40.43■■■■■ 4.06
SIX3-201ENST00000260653 RB1CC1Q8TDY2 1594 aa40.39■■■■■ 4.06
SIX3-201ENST00000260653 SUPT5HO00267 1087 aaKnown RBP39.83■■■■□ 3.97
SIX3-201ENST00000260653 UNC13AQ9UPW8 1703 aa39.68■■■■□ 3.94
SIX3-201ENST00000260653 BICRAQ9NZM4 1560 aa39.24■■■■□ 3.87
SIX3-201ENST00000260653 CECR2Q9BXF3 1484 aa39.21■■■■□ 3.87
SIX3-201ENST00000260653 RSF1Q96T23 1441 aaPredicted RBP39.17■■■■□ 3.86
SIX3-201ENST00000260653 PABPN1Q86U42 306 aaKnown RBP eCLIP39.13■■■■□ 3.85
SIX3-201ENST00000260653 MROH2BQ7Z745 1585 aa38.98■■■■□ 3.83
SIX3-201ENST00000260653 BAZ1AQ9NRL2 1556 aaPredicted RBP38.86■■■■□ 3.81
SIX3-201ENST00000260653 SMARCA4P51532 1647 aa38.7■■■■□ 3.79
SIX3-201ENST00000260653 WIZO95785 1651 aa38.68■■■■□ 3.78
SIX3-201ENST00000260653 TOP2AP11388 1531 aaKnown RBP38.21■■■■□ 3.71
SIX3-201ENST00000260653 PEG3Q9GZU2 1588 aa38.18■■■■□ 3.7
SIX3-201ENST00000260653 CHIC1Q5VXU3 224 aa38.15■■■■□ 3.7
SIX3-201ENST00000260653 EIF4G1Q04637 1599 aaKnown RBP38.04■■■■□ 3.68
SIX3-201ENST00000260653 ATAD2BQ9ULI0 1458 aa38.03■■■■□ 3.68
SIX3-201ENST00000260653 SMARCA2P51531 1590 aa37.97■■■■□ 3.67
SIX3-201ENST00000260653 CCDC88BA6NC98 1476 aa37.86■■■■□ 3.65
SIX3-201ENST00000260653 BAZ1BQ9UIG0 1483 aaKnown RBP37.83■■■■□ 3.65
SIX3-201ENST00000260653 NCAPD3P42695 1498 aa37.63■■■■□ 3.62
SIX3-201ENST00000260653 HMGXB3Q12766 1538 aa37.59■■■■□ 3.61
SIX3-201ENST00000260653 CC2D2AQ9P2K1 1620 aa37.45■■■■□ 3.59
SIX3-201ENST00000260653 TRIM41Q8WV44 630 aa37.37■■■■□ 3.57
SIX3-201ENST00000260653 ABCC8Q09428 1581 aa37.19■■■■□ 3.54
SIX3-201ENST00000260653 CFTRP13569 1480 aa36.87■■■■□ 3.49
SIX3-201ENST00000260653 WRNQ14191 1432 aaPredicted RBP eCLIP36.85■■■■□ 3.49
SIX3-201ENST00000260653 FAM9AQ8IZU1 332 aaPredicted RBP36.79■■■■□ 3.48
SIX3-201ENST00000260653 LOC105371045A0A1W2PR82 267 aa36.77■■■■□ 3.48
SIX3-201ENST00000260653 SYNJ1O43426 1573 aa36.74■■■■□ 3.47
SIX3-201ENST00000260653 CADPSQ9ULU8 1353 aa36.71■■■■□ 3.47
SIX3-201ENST00000260653 PRDM2Q13029 1718 aa36.67■■■■□ 3.46
SIX3-201ENST00000260653 DNAJC5BQ9UF47 199 aa36.6■■■■□ 3.45
SIX3-201ENST00000260653 TOP2BQ02880 1626 aa36.52■■■■□ 3.44
SIX3-201ENST00000260653 SOGA1O94964 1423 aa36.5■■■■□ 3.43
SIX3-201ENST00000260653 BIVM-ERCC5R4GMW8 1640 aa36.47■■■■□ 3.43
SIX3-201ENST00000260653 NESP48681 1621 aa36.44■■■■□ 3.42
SIX3-201ENST00000260653 CUX1P39880 1505 aa36.43■■■■□ 3.42
SIX3-201ENST00000260653 RUSC2Q8N2Y8 1516 aa36.37■■■■□ 3.41
SIX3-201ENST00000260653 EHMT2Q96KQ7 1210 aa36.35■■■■□ 3.41
SIX3-201ENST00000260653 FANCD2Q9BXW9 1451 aa36.33■■■■□ 3.41
SIX3-201ENST00000260653 LAMC3Q9Y6N6 1575 aa36.33■■■■□ 3.41
SIX3-201ENST00000260653 EEA1Q15075 1411 aa36.31■■■■□ 3.4
SIX3-201ENST00000260653 CSRNP3Q8WYN3 585 aa36.18■■■■□ 3.38
SIX3-201ENST00000260653 CEP164Q9UPV0 1460 aa36.07■■■■□ 3.36
SIX3-201ENST00000260653 PDS5BQ9NTI5 1447 aa36.04■■■■□ 3.36
SIX3-201ENST00000260653 DNMBPQ6XZF7 1577 aa36■■■■□ 3.35
SIX3-201ENST00000260653 FGD5Q6ZNL6 1462 aa36■■■■□ 3.35
SIX3-201ENST00000260653 KIF21AQ7Z4S6 1674 aa35.97■■■■□ 3.35
SIX3-201ENST00000260653 TOPBP1Q92547 1522 aa35.96■■■■□ 3.35
SIX3-201ENST00000260653 GOLGA3Q08378 1498 aa35.89■■■■□ 3.34
SIX3-201ENST00000260653 KIF21BO75037 1637 aa35.89■■■■□ 3.34
SIX3-201ENST00000260653 URB2Q14146 1524 aaKnown RBP35.89■■■■□ 3.34
SIX3-201ENST00000260653 KIF27Q86VH2 1401 aa35.88■■■■□ 3.33
SIX3-201ENST00000260653 POLA1P09884 1462 aaPredicted RBP35.81■■■■□ 3.32
SIX3-201ENST00000260653 CUX2O14529 1486 aa35.8■■■■□ 3.32
SIX3-201ENST00000260653 TNIKQ9UKE5 1360 aa35.79■■■■□ 3.32
SIX3-201ENST00000260653 UBTFP17480 764 aaKnown RBP35.78■■■■□ 3.32
SIX3-201ENST00000260653 RAPGEF2Q9Y4G8 1499 aa35.74■■■■□ 3.31
SIX3-201ENST00000260653 RAD54L2Q9Y4B4 1467 aa35.73■■■■□ 3.31
SIX3-201ENST00000260653 PRXQ9BXM0 1461 aa35.69■■■■□ 3.3
SIX3-201ENST00000260653 CEP162Q5TB80 1403 aa35.67■■■■□ 3.3
SIX3-201ENST00000260653 ABCA10Q8WWZ4 1543 aa35.64■■■■□ 3.3
SIX3-201ENST00000260653 ERICH3Q5RHP9 1530 aa35.61■■■■□ 3.29
SIX3-201ENST00000260653 MRC2Q9UBG0 1479 aa35.6■■■■□ 3.29
SIX3-201ENST00000260653 IGF1RP08069 1367 aa35.57■■■■□ 3.28
SIX3-201ENST00000260653 WDR97A6NE52 1622 aa35.53■■■■□ 3.28
SIX3-201ENST00000260653 ERCC6Q03468 1493 aa35.46■■■■□ 3.27
SIX3-201ENST00000260653 WDR62O43379 1518 aa35.41■■■■□ 3.26
SIX3-201ENST00000260653 TARBP1Q13395 1621 aaKnown RBP35.4■■■■□ 3.26
SIX3-201ENST00000260653 CARMIL1Q5VZK9 1371 aa35.39■■■■□ 3.26
SIX3-201ENST00000260653 TDRD9Q8NDG6 1382 aaKnown RBP35.37■■■■□ 3.25
SIX3-201ENST00000260653 ABCA5Q8WWZ7 1642 aa35.36■■■■□ 3.25
SIX3-201ENST00000260653 CLIP1P30622 1438 aa35.35■■■■□ 3.25
SIX3-201ENST00000260653 THOC2Q8NI27 1593 aaKnown RBP35.3■■■■□ 3.24
SIX3-201ENST00000260653 GAPVD1Q14C86 1478 aa35.28■■■■□ 3.24
SIX3-201ENST00000260653 RANGAP1P46060 587 aaPredicted RBP35.26■■■■□ 3.24
SIX3-201ENST00000260653 CUL7Q14999 1698 aa35.24■■■■□ 3.23
SIX3-201ENST00000260653 PCGF6Q9BYE7 350 aa35.22■■■■□ 3.23
SIX3-201ENST00000260653 IFT140Q96RY7 1462 aa35.17■■■■□ 3.22
SIX3-201ENST00000260653 AQRO60306 1485 aaKnown RBP eCLIP35.12■■■■□ 3.21
SIX3-201ENST00000260653 PPARGC1BQ86YN6 1023 aaKnown RBP35.09■■■■□ 3.21
SIX3-201ENST00000260653 TRIM26Q12899 539 aaPredicted RBP35.09■■■■□ 3.21
SIX3-201ENST00000260653 PBRM1Q86U86 1689 aa35.08■■■■□ 3.21
SIX3-201ENST00000260653 ZNF608Q9ULD9 1512 aaPredicted RBP35.07■■■■□ 3.21
SIX3-201ENST00000260653 VPS8Q8N3P4 1428 aa35.04■■■■□ 3.2
SIX3-201ENST00000260653 ARAP1Q96P48 1450 aa35.01■■■■□ 3.19
SIX3-201ENST00000260653 ARHGAP35Q9NRY4 1499 aa34.96■■■■□ 3.19
SIX3-201ENST00000260653 GRIN2BQ13224 1484 aa34.96■■■■□ 3.19
SIX3-201ENST00000260653 EIF4G3O43432 1585 aaKnown RBP34.93■■■■□ 3.18
SIX3-201ENST00000260653 CTTNBP2Q8WZ74 1663 aa34.91■■■■□ 3.18
Retrieved 100 of 20,778 RNA–protein pairs in 69.2 ms