Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC18.56■□□□□ 0.56
CCDC28AQ8IWP9 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC18.56■□□□□ 0.56
CCDC28AQ8IWP9 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
CCDC28AQ8IWP9 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
CCDC28AQ8IWP9 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CCDC28AQ8IWP9 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CCDC28AQ8IWP9 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
CCDC28AQ8IWP9 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CCDC28AQ8IWP9 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC18.55■□□□□ 0.56
CCDC28AQ8IWP9 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
CCDC28AQ8IWP9 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
CCDC28AQ8IWP9 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC18.55■□□□□ 0.56
CCDC28AQ8IWP9 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CCDC28AQ8IWP9 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC18.55■□□□□ 0.56
CCDC28AQ8IWP9 DUX4L29-201ENST00000425409 679 ntBASIC18.55■□□□□ 0.56
CCDC28AQ8IWP9 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
CCDC28AQ8IWP9 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CCDC28AQ8IWP9 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
CCDC28AQ8IWP9 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC18.55■□□□□ 0.56
CCDC28AQ8IWP9 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC18.54■□□□□ 0.56
CCDC28AQ8IWP9 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
CCDC28AQ8IWP9 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC18.54■□□□□ 0.56
CCDC28AQ8IWP9 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CCDC28AQ8IWP9 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC18.54■□□□□ 0.56
CCDC28AQ8IWP9 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
CCDC28AQ8IWP9 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
CCDC28AQ8IWP9 CALM3-209ENST00000597743 577 ntTSL 4 BASIC18.54■□□□□ 0.56
CCDC28AQ8IWP9 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC18.54■□□□□ 0.56
CCDC28AQ8IWP9 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
CCDC28AQ8IWP9 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
CCDC28AQ8IWP9 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
CCDC28AQ8IWP9 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CCDC28AQ8IWP9 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CCDC28AQ8IWP9 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC18.54■□□□□ 0.56
CCDC28AQ8IWP9 AC110285.7-201ENST00000624417 1536 ntBASIC18.54■□□□□ 0.56
CCDC28AQ8IWP9 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC18.53■□□□□ 0.56
CCDC28AQ8IWP9 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
CCDC28AQ8IWP9 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CCDC28AQ8IWP9 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC18.53■□□□□ 0.56
CCDC28AQ8IWP9 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC18.53■□□□□ 0.56
CCDC28AQ8IWP9 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CCDC28AQ8IWP9 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CCDC28AQ8IWP9 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC18.53■□□□□ 0.56
CCDC28AQ8IWP9 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
CCDC28AQ8IWP9 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
CCDC28AQ8IWP9 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CCDC28AQ8IWP9 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CCDC28AQ8IWP9 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC18.53■□□□□ 0.56
CCDC28AQ8IWP9 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC18.53■□□□□ 0.56
CCDC28AQ8IWP9 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
CCDC28AQ8IWP9 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
CCDC28AQ8IWP9 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CCDC28AQ8IWP9 TAZ-201ENST00000369776 1596 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
CCDC28AQ8IWP9 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC18.52■□□□□ 0.56
CCDC28AQ8IWP9 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CCDC28AQ8IWP9 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC18.52■□□□□ 0.56
CCDC28AQ8IWP9 RPS2P35-201ENST00000443417 897 ntBASIC18.52■□□□□ 0.56
CCDC28AQ8IWP9 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC18.52■□□□□ 0.56
CCDC28AQ8IWP9 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CCDC28AQ8IWP9 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC18.52■□□□□ 0.55
CCDC28AQ8IWP9 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
CCDC28AQ8IWP9 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC18.52■□□□□ 0.55
CCDC28AQ8IWP9 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.55
CCDC28AQ8IWP9 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
CCDC28AQ8IWP9 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
CCDC28AQ8IWP9 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC18.52■□□□□ 0.55
CCDC28AQ8IWP9 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.55
CCDC28AQ8IWP9 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
CCDC28AQ8IWP9 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CCDC28AQ8IWP9 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
CCDC28AQ8IWP9 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC18.51■□□□□ 0.55
CCDC28AQ8IWP9 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
CCDC28AQ8IWP9 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CCDC28AQ8IWP9 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
CCDC28AQ8IWP9 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CCDC28AQ8IWP9 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC18.51■□□□□ 0.55
CCDC28AQ8IWP9 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
CCDC28AQ8IWP9 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
CCDC28AQ8IWP9 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CCDC28AQ8IWP9 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC18.51■□□□□ 0.55
CCDC28AQ8IWP9 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC18.51■□□□□ 0.55
CCDC28AQ8IWP9 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC18.51■□□□□ 0.55
CCDC28AQ8IWP9 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC18.51■□□□□ 0.55
CCDC28AQ8IWP9 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
CCDC28AQ8IWP9 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CCDC28AQ8IWP9 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC18.5■□□□□ 0.55
CCDC28AQ8IWP9 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CCDC28AQ8IWP9 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
CCDC28AQ8IWP9 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC18.5■□□□□ 0.55
CCDC28AQ8IWP9 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC18.5■□□□□ 0.55
CCDC28AQ8IWP9 AL157384.1-201ENST00000445995 2473 ntBASIC18.5■□□□□ 0.55
CCDC28AQ8IWP9 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC18.5■□□□□ 0.55
CCDC28AQ8IWP9 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
CCDC28AQ8IWP9 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC18.5■□□□□ 0.55
CCDC28AQ8IWP9 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC18.5■□□□□ 0.55
CCDC28AQ8IWP9 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC18.49■□□□□ 0.55
CCDC28AQ8IWP9 LETM1P2-201ENST00000597330 2178 ntBASIC18.49■□□□□ 0.55
CCDC28AQ8IWP9 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
CCDC28AQ8IWP9 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CCDC28AQ8IWP9 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 18.8 ms