RNA–Protein interactions for RNA: ENST00000506706.5

RNF4-207, Transcript of ring finger protein 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RNF4, Length 2,098 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-207ENST00000506706 NISCHQ9Y2I1 1504 aa48.88■■■■■ 5.42
RNF4-207ENST00000506706 CCDC180Q9P1Z9 1646 aa42.31■■■■■ 4.36
RNF4-207ENST00000506706 ZCCHC6Q5VYS8 1495 aaKnown RBP41.17■■■■■ 4.18
RNF4-207ENST00000506706 SHROOM4Q9ULL8 1493 aa40.4■■■■■ 4.06
RNF4-207ENST00000506706 DCAF1Q9Y4B6 1507 aa40.37■■■■■ 4.05
RNF4-207ENST00000506706 DCAF8L2P0C7V8 631 aa40.33■■■■■ 4.05
RNF4-207ENST00000506706 MYO15BQ96JP2 1530 aa39.65■■■■□ 3.94
RNF4-207ENST00000506706 ABCC9O60706 1549 aa39.59■■■■□ 3.93
RNF4-207ENST00000506706 NACADO15069 1562 aa39.29■■■■□ 3.88
RNF4-207ENST00000506706 SUPT5HO00267 1087 aaKnown RBP39.17■■■■□ 3.86
RNF4-207ENST00000506706 SCRIBQ14160 1630 aa39.08■■■■□ 3.85
RNF4-207ENST00000506706 RB1CC1Q8TDY2 1594 aa38.83■■■■□ 3.81
RNF4-207ENST00000506706 RSF1Q96T23 1441 aaPredicted RBP38.17■■■■□ 3.7
RNF4-207ENST00000506706 UNC13AQ9UPW8 1703 aa38.1■■■■□ 3.69
RNF4-207ENST00000506706 CECR2Q9BXF3 1484 aa37.98■■■■□ 3.67
RNF4-207ENST00000506706 MROH2BQ7Z745 1585 aa37.81■■■■□ 3.64
RNF4-207ENST00000506706 CHIC1Q5VXU3 224 aa37.75■■■■□ 3.63
RNF4-207ENST00000506706 BAZ1AQ9NRL2 1556 aaPredicted RBP37.7■■■■□ 3.63
RNF4-207ENST00000506706 BICRAQ9NZM4 1560 aa37.66■■■■□ 3.62
RNF4-207ENST00000506706 WIZO95785 1651 aa37.56■■■■□ 3.6
RNF4-207ENST00000506706 PABPN1Q86U42 306 aaKnown RBP eCLIP37.5■■■■□ 3.59
RNF4-207ENST00000506706 SMARCA4P51532 1647 aa37.46■■■■□ 3.59
RNF4-207ENST00000506706 TOP2AP11388 1531 aaKnown RBP37.13■■■■□ 3.53
RNF4-207ENST00000506706 PEG3Q9GZU2 1588 aa36.94■■■■□ 3.5
RNF4-207ENST00000506706 SMARCA2P51531 1590 aa36.82■■■■□ 3.48
RNF4-207ENST00000506706 CCDC88BA6NC98 1476 aa36.8■■■■□ 3.48
RNF4-207ENST00000506706 TRIM41Q8WV44 630 aa36.76■■■■□ 3.47
RNF4-207ENST00000506706 EIF4G1Q04637 1599 aaKnown RBP36.73■■■■□ 3.47
RNF4-207ENST00000506706 ATAD2BQ9ULI0 1458 aa36.7■■■■□ 3.47
RNF4-207ENST00000506706 BAZ1BQ9UIG0 1483 aaKnown RBP36.54■■■■□ 3.44
RNF4-207ENST00000506706 LOC105371045A0A1W2PR82 267 aa36.38■■■■□ 3.41
RNF4-207ENST00000506706 NCAPD3P42695 1498 aa36.27■■■■□ 3.4
RNF4-207ENST00000506706 HMGXB3Q12766 1538 aa36.25■■■■□ 3.39
RNF4-207ENST00000506706 ABCC8Q09428 1581 aa36.24■■■■□ 3.39
RNF4-207ENST00000506706 FAM9AQ8IZU1 332 aaPredicted RBP36.15■■■■□ 3.38
RNF4-207ENST00000506706 WRNQ14191 1432 aaPredicted RBP eCLIP35.92■■■■□ 3.342e-6■■■■■ 29.9
RNF4-207ENST00000506706 CC2D2AQ9P2K1 1620 aa35.82■■■■□ 3.32
RNF4-207ENST00000506706 SYNJ1O43426 1573 aa35.74■■■■□ 3.31
RNF4-207ENST00000506706 SOGA1O94964 1423 aa35.68■■■■□ 3.3
RNF4-207ENST00000506706 EEA1Q15075 1411 aa35.68■■■■□ 3.3
RNF4-207ENST00000506706 EHMT2Q96KQ7 1210 aa35.66■■■■□ 3.3
RNF4-207ENST00000506706 CFTRP13569 1480 aa35.64■■■■□ 3.3
RNF4-207ENST00000506706 TOP2BQ02880 1626 aa35.54■■■■□ 3.28
RNF4-207ENST00000506706 RUSC2Q8N2Y8 1516 aa35.52■■■■□ 3.28
RNF4-207ENST00000506706 CSRNP3Q8WYN3 585 aa35.48■■■■□ 3.27
RNF4-207ENST00000506706 PRDM2Q13029 1718 aa35.48■■■■□ 3.27
RNF4-207ENST00000506706 BIVM-ERCC5R4GMW8 1640 aa35.47■■■■□ 3.27
RNF4-207ENST00000506706 CADPSQ9ULU8 1353 aa35.41■■■■□ 3.26
RNF4-207ENST00000506706 PCGF6Q9BYE7 350 aa35.34■■■■□ 3.25
RNF4-207ENST00000506706 CUX1P39880 1505 aa35.31■■■■□ 3.24
RNF4-207ENST00000506706 GOLGA3Q08378 1498 aa35.24■■■■□ 3.23
RNF4-207ENST00000506706 TNIKQ9UKE5 1360 aa35.24■■■■□ 3.23
RNF4-207ENST00000506706 KIF21BO75037 1637 aa35.19■■■■□ 3.22
RNF4-207ENST00000506706 CEP164Q9UPV0 1460 aa35.18■■■■□ 3.22
RNF4-207ENST00000506706 TRIM26Q12899 539 aaPredicted RBP35.16■■■■□ 3.22
RNF4-207ENST00000506706 UBTFP17480 764 aaKnown RBP35.13■■■■□ 3.21
RNF4-207ENST00000506706 CEP162Q5TB80 1403 aa35.11■■■■□ 3.21
RNF4-207ENST00000506706 FANCD2Q9BXW9 1451 aa35.03■■■■□ 3.2
RNF4-207ENST00000506706 KIF27Q86VH2 1401 aa34.95■■■■□ 3.19
RNF4-207ENST00000506706 NESP48681 1621 aa34.95■■■■□ 3.19
RNF4-207ENST00000506706 LAMC3Q9Y6N6 1575 aa34.94■■■■□ 3.18
RNF4-207ENST00000506706 RAPGEF2Q9Y4G8 1499 aa34.92■■■■□ 3.18
RNF4-207ENST00000506706 FGD5Q6ZNL6 1462 aa34.85■■■■□ 3.17
RNF4-207ENST00000506706 PRXQ9BXM0 1461 aa34.84■■■■□ 3.17
RNF4-207ENST00000506706 ERICH3Q5RHP9 1530 aa34.84■■■■□ 3.17
RNF4-207ENST00000506706 DNMBPQ6XZF7 1577 aa34.8■■■■□ 3.16
RNF4-207ENST00000506706 DNAJC5BQ9UF47 199 aa34.78■■■■□ 3.16
RNF4-207ENST00000506706 HRCP23327 699 aa34.76■■■■□ 3.16
RNF4-207ENST00000506706 CUX2O14529 1486 aa34.75■■■■□ 3.15
RNF4-207ENST00000506706 CLIP1P30622 1438 aa34.71■■■■□ 3.15
RNF4-207ENST00000506706 TOPBP1Q92547 1522 aa34.71■■■■□ 3.15
RNF4-207ENST00000506706 PDS5BQ9NTI5 1447 aa34.69■■■■□ 3.14
RNF4-207ENST00000506706 PPARGC1BQ86YN6 1023 aaKnown RBP34.66■■■■□ 3.14
RNF4-207ENST00000506706 POLA1P09884 1462 aaPredicted RBP34.59■■■■□ 3.13
RNF4-207ENST00000506706 IGF1RP08069 1367 aa34.59■■■■□ 3.13
RNF4-207ENST00000506706 URB2Q14146 1524 aaKnown RBP34.55■■■■□ 3.12
RNF4-207ENST00000506706 ABCA10Q8WWZ4 1543 aa34.53■■■■□ 3.12
RNF4-207ENST00000506706 RAD54L2Q9Y4B4 1467 aa34.51■■■■□ 3.12
RNF4-207ENST00000506706 KIF21AQ7Z4S6 1674 aa34.51■■■■□ 3.11
RNF4-207ENST00000506706 VPS8Q8N3P4 1428 aa34.48■■■■□ 3.11
RNF4-207ENST00000506706 CARMIL1Q5VZK9 1371 aa34.44■■■■□ 3.1
RNF4-207ENST00000506706 RANGAP1P46060 587 aaPredicted RBP34.43■■■■□ 3.1
RNF4-207ENST00000506706 WDR97A6NE52 1622 aa34.35■■■■□ 3.09
RNF4-207ENST00000506706 ARAP1Q96P48 1450 aa34.29■■■■□ 3.08
RNF4-207ENST00000506706 TTBK1Q5TCY1 1321 aaPredicted RBP34.28■■■■□ 3.08
RNF4-207ENST00000506706 CUL7Q14999 1698 aa34.25■■■■□ 3.07
RNF4-207ENST00000506706 APLP2Q06481 763 aa34.21■■■■□ 3.07
RNF4-207ENST00000506706 ABCA5Q8WWZ7 1642 aa34.2■■■■□ 3.06
RNF4-207ENST00000506706 MRC2Q9UBG0 1479 aa34.19■■■■□ 3.06
RNF4-207ENST00000506706 ARHGAP35Q9NRY4 1499 aa34.18■■■■□ 3.06
RNF4-207ENST00000506706 TDRD9Q8NDG6 1382 aaKnown RBP34.13■■■■□ 3.05
RNF4-207ENST00000506706 TARBP1Q13395 1621 aaKnown RBP34.13■■■■□ 3.05
RNF4-207ENST00000506706 GAPVD1Q14C86 1478 aa34.13■■■■□ 3.05
RNF4-207ENST00000506706 ZEB1P37275 1124 aaPredicted RBP34.05■■■■□ 3.04
RNF4-207ENST00000506706 WDR62O43379 1518 aa33.98■■■■□ 3.03
RNF4-207ENST00000506706 CTTNBP2Q8WZ74 1663 aa33.96■■■■□ 3.03
RNF4-207ENST00000506706 ERCC6Q03468 1493 aa33.89■■■■□ 3.02
RNF4-207ENST00000506706 PBRM1Q86U86 1689 aa33.88■■■■□ 3.01
RNF4-207ENST00000506706 IFT140Q96RY7 1462 aa33.87■■■■□ 3.01
RNF4-207ENST00000506706 EFCAB5A4FU69 1503 aa33.85■■■■□ 3.01
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms