RNA–Protein interactions for RNA: ENST00000360171.10

CBWD3-201, Transcript of COBW domain containing 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene CBWD3, Length 2,165 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBWD3-201ENST00000360171 NISCHQ9Y2I1 1504 aa45.41■■■■■ 4.86
CBWD3-201ENST00000360171 CCDC180Q9P1Z9 1646 aa39.67■■■■□ 3.94
CBWD3-201ENST00000360171 ZCCHC6Q5VYS8 1495 aaKnown RBP38.15■■■■□ 3.7
CBWD3-201ENST00000360171 ABCC9O60706 1549 aa37.56■■■■□ 3.6
CBWD3-201ENST00000360171 DCAF1Q9Y4B6 1507 aa37.51■■■■□ 3.59
CBWD3-201ENST00000360171 DCAF8L2P0C7V8 631 aa37.45■■■■□ 3.59
CBWD3-201ENST00000360171 MYO15BQ96JP2 1530 aa37.08■■■■□ 3.53
CBWD3-201ENST00000360171 SHROOM4Q9ULL8 1493 aa37.01■■■■□ 3.52
CBWD3-201ENST00000360171 NACADO15069 1562 aa36.9■■■■□ 3.5
CBWD3-201ENST00000360171 RB1CC1Q8TDY2 1594 aa36.62■■■■□ 3.45
CBWD3-201ENST00000360171 SCRIBQ14160 1630 aa36.5■■■■□ 3.43
CBWD3-201ENST00000360171 UNC13AQ9UPW8 1703 aa36.06■■■■□ 3.36
CBWD3-201ENST00000360171 BICRAQ9NZM4 1560 aa35.6■■■■□ 3.29
CBWD3-201ENST00000360171 SUPT5HO00267 1087 aaKnown RBP35.51■■■■□ 3.28
CBWD3-201ENST00000360171 PABPN1Q86U42 306 aaKnown RBP eCLIP35.38■■■■□ 3.25
CBWD3-201ENST00000360171 CECR2Q9BXF3 1484 aa35.33■■■■□ 3.25
CBWD3-201ENST00000360171 RSF1Q96T23 1441 aaPredicted RBP35.19■■■■□ 3.22
CBWD3-201ENST00000360171 MROH2BQ7Z745 1585 aa35.12■■■■□ 3.21
CBWD3-201ENST00000360171 BAZ1AQ9NRL2 1556 aaPredicted RBP35.05■■■■□ 3.2
CBWD3-201ENST00000360171 SMARCA4P51532 1647 aa34.97■■■■□ 3.19
CBWD3-201ENST00000360171 WIZO95785 1651 aa34.87■■■■□ 3.17
CBWD3-201ENST00000360171 PEG3Q9GZU2 1588 aa34.51■■■■□ 3.12
CBWD3-201ENST00000360171 EIF4G1Q04637 1599 aaKnown RBP34.49■■■■□ 3.11
CBWD3-201ENST00000360171 TOP2AP11388 1531 aaKnown RBP34.44■■■■□ 3.1
CBWD3-201ENST00000360171 ATAD2BQ9ULI0 1458 aa34.36■■■■□ 3.09
CBWD3-201ENST00000360171 SMARCA2P51531 1590 aa34.32■■■■□ 3.08
CBWD3-201ENST00000360171 BAZ1BQ9UIG0 1483 aaKnown RBP34.15■■■■□ 3.06
CBWD3-201ENST00000360171 CCDC88BA6NC98 1476 aa34.08■■■■□ 3.05
CBWD3-201ENST00000360171 NCAPD3P42695 1498 aa34.04■■■■□ 3.04
CBWD3-201ENST00000360171 HMGXB3Q12766 1538 aa34.03■■■■□ 3.04
CBWD3-201ENST00000360171 CC2D2AQ9P2K1 1620 aa34.02■■■■□ 3.04
CBWD3-201ENST00000360171 CHIC1Q5VXU3 224 aa33.96■■■■□ 3.03
CBWD3-201ENST00000360171 ABCC8Q09428 1581 aa33.41■■■□□ 2.94
CBWD3-201ENST00000360171 TRIM41Q8WV44 630 aa33.34■■■□□ 2.93
CBWD3-201ENST00000360171 CFTRP13569 1480 aa33.29■■■□□ 2.92
CBWD3-201ENST00000360171 PRDM2Q13029 1718 aa33.24■■■□□ 2.91
CBWD3-201ENST00000360171 DNAJC5BQ9UF47 199 aa33.2■■■□□ 2.91
CBWD3-201ENST00000360171 CADPSQ9ULU8 1353 aa33.15■■■□□ 2.9
CBWD3-201ENST00000360171 WRNQ14191 1432 aaPredicted RBP eCLIP33.1■■■□□ 2.89
CBWD3-201ENST00000360171 HRCP23327 699 aa33.08■■■□□ 2.89
CBWD3-201ENST00000360171 SYNJ1O43426 1573 aa33.07■■■□□ 2.88
CBWD3-201ENST00000360171 NESP48681 1621 aa32.99■■■□□ 2.87
CBWD3-201ENST00000360171 LAMC3Q9Y6N6 1575 aa32.93■■■□□ 2.86
CBWD3-201ENST00000360171 TOP2BQ02880 1626 aa32.9■■■□□ 2.86
CBWD3-201ENST00000360171 BIVM-ERCC5R4GMW8 1640 aa32.9■■■□□ 2.86
CBWD3-201ENST00000360171 CUX1P39880 1505 aa32.84■■■□□ 2.85
CBWD3-201ENST00000360171 FANCD2Q9BXW9 1451 aa32.83■■■□□ 2.85
CBWD3-201ENST00000360171 FAM9AQ8IZU1 332 aaPredicted RBP32.8■■■□□ 2.84
CBWD3-201ENST00000360171 PCGF6Q9BYE7 350 aa32.72■■■□□ 2.83
CBWD3-201ENST00000360171 SOGA1O94964 1423 aa32.71■■■□□ 2.83
CBWD3-201ENST00000360171 LOC105371045A0A1W2PR82 267 aa32.69■■■□□ 2.82
CBWD3-201ENST00000360171 KIF21AQ7Z4S6 1674 aa32.65■■■□□ 2.82
CBWD3-201ENST00000360171 RUSC2Q8N2Y8 1516 aa32.63■■■□□ 2.81
CBWD3-201ENST00000360171 CEP164Q9UPV0 1460 aa32.62■■■□□ 2.81
CBWD3-201ENST00000360171 PDS5BQ9NTI5 1447 aa32.61■■■□□ 2.81
CBWD3-201ENST00000360171 DNMBPQ6XZF7 1577 aa32.54■■■□□ 2.8
CBWD3-201ENST00000360171 EEA1Q15075 1411 aa32.53■■■□□ 2.8
CBWD3-201ENST00000360171 TOPBP1Q92547 1522 aa32.49■■■□□ 2.79
CBWD3-201ENST00000360171 FGD5Q6ZNL6 1462 aa32.47■■■□□ 2.79
CBWD3-201ENST00000360171 URB2Q14146 1524 aaKnown RBP32.46■■■□□ 2.79
CBWD3-201ENST00000360171 EHMT2Q96KQ7 1210 aa32.38■■■□□ 2.77
CBWD3-201ENST00000360171 CSRNP3Q8WYN3 585 aa32.37■■■□□ 2.77
CBWD3-201ENST00000360171 POLA1P09884 1462 aaPredicted RBP32.32■■■□□ 2.77
CBWD3-201ENST00000360171 TRIM26Q12899 539 aaPredicted RBP32.28■■■□□ 2.76
CBWD3-201ENST00000360171 MRC2Q9UBG0 1479 aa32.25■■■□□ 2.75
CBWD3-201ENST00000360171 KIF27Q86VH2 1401 aa32.25■■■□□ 2.75
CBWD3-201ENST00000360171 RAD54L2Q9Y4B4 1467 aa32.23■■■□□ 2.75
CBWD3-201ENST00000360171 CUX2O14529 1486 aa32.22■■■□□ 2.75
CBWD3-201ENST00000360171 KIF21BO75037 1637 aa32.22■■■□□ 2.75
CBWD3-201ENST00000360171 WDR97A6NE52 1622 aa32.17■■■□□ 2.74
CBWD3-201ENST00000360171 ERCC6Q03468 1493 aa32.16■■■□□ 2.74
CBWD3-201ENST00000360171 ABCA10Q8WWZ4 1543 aa32.16■■■□□ 2.74
CBWD3-201ENST00000360171 GOLGA3Q08378 1498 aa32.13■■■□□ 2.73
CBWD3-201ENST00000360171 WDR62O43379 1518 aa32.12■■■□□ 2.73
CBWD3-201ENST00000360171 THOC2Q8NI27 1593 aaKnown RBP32.1■■■□□ 2.73
CBWD3-201ENST00000360171 RAPGEF2Q9Y4G8 1499 aa32.06■■■□□ 2.72
CBWD3-201ENST00000360171 PPARGC1BQ86YN6 1023 aaKnown RBP32.05■■■□□ 2.72
CBWD3-201ENST00000360171 PRXQ9BXM0 1461 aa32.05■■■□□ 2.72
CBWD3-201ENST00000360171 TARBP1Q13395 1621 aaKnown RBP32.05■■■□□ 2.72
CBWD3-201ENST00000360171 ERICH3Q5RHP9 1530 aa31.99■■■□□ 2.71
CBWD3-201ENST00000360171 TNIKQ9UKE5 1360 aa31.99■■■□□ 2.71
CBWD3-201ENST00000360171 IGF1RP08069 1367 aa31.98■■■□□ 2.71
CBWD3-201ENST00000360171 ABCA5Q8WWZ7 1642 aa31.97■■■□□ 2.71
CBWD3-201ENST00000360171 UBTFP17480 764 aaKnown RBP31.94■■■□□ 2.7
CBWD3-201ENST00000360171 TDRD9Q8NDG6 1382 aaKnown RBP31.88■■■□□ 2.69
CBWD3-201ENST00000360171 CEP162Q5TB80 1403 aa31.86■■■□□ 2.69
CBWD3-201ENST00000360171 GAPVD1Q14C86 1478 aa31.83■■■□□ 2.69
CBWD3-201ENST00000360171 IFT140Q96RY7 1462 aa31.83■■■□□ 2.69
CBWD3-201ENST00000360171 CARMIL1Q5VZK9 1371 aa31.8■■■□□ 2.68
CBWD3-201ENST00000360171 CUL7Q14999 1698 aa31.8■■■□□ 2.68
CBWD3-201ENST00000360171 ZEB1P37275 1124 aaPredicted RBP31.8■■■□□ 2.68
CBWD3-201ENST00000360171 PBRM1Q86U86 1689 aa31.78■■■□□ 2.68
CBWD3-201ENST00000360171 ZNF608Q9ULD9 1512 aaPredicted RBP31.73■■■□□ 2.67
CBWD3-201ENST00000360171 AQRO60306 1485 aaKnown RBP eCLIP31.72■■■□□ 2.67
CBWD3-201ENST00000360171 EIF4G3O43432 1585 aaKnown RBP31.65■■■□□ 2.66
CBWD3-201ENST00000360171 CLIP1P30622 1438 aa31.62■■■□□ 2.65
CBWD3-201ENST00000360171 GRIN2BQ13224 1484 aa31.58■■■□□ 2.65
CBWD3-201ENST00000360171 ADAMTS12P58397 1594 aa31.55■■■□□ 2.64
CBWD3-201ENST00000360171 RANGAP1P46060 587 aaPredicted RBP31.51■■■□□ 2.63
CBWD3-201ENST00000360171 CTTNBP2Q8WZ74 1663 aa31.51■■■□□ 2.63
Retrieved 100 of 20,778 RNA–protein pairs in 9.5 ms