Protein–RNA interactions for Protein: Q8N4M1

SLC44A3, Choline transporter-like protein 3, humanhuman

Predictions only

Length 653 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC44A3Q8N4M1 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC29.26■■■□□ 2.27
SLC44A3Q8N4M1 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC29.26■■■□□ 2.27
SLC44A3Q8N4M1 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC29.24■■■□□ 2.27
SLC44A3Q8N4M1 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC29.24■■■□□ 2.27
SLC44A3Q8N4M1 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC29.23■■■□□ 2.27
SLC44A3Q8N4M1 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC29.23■■■□□ 2.27
SLC44A3Q8N4M1 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC29.23■■■□□ 2.27
SLC44A3Q8N4M1 AL133380.1-201ENST00000506013 324 ntBASIC29.22■■■□□ 2.27
SLC44A3Q8N4M1 MAPK1-202ENST00000398822 1487 ntAPPRIS P1 TSL 1 (best) BASIC29.22■■■□□ 2.27
SLC44A3Q8N4M1 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC29.18■■■□□ 2.26
SLC44A3Q8N4M1 LMO2-202ENST00000395833 1687 ntAPPRIS P1 TSL 1 (best) BASIC29.17■■■□□ 2.26
SLC44A3Q8N4M1 HNRNPLP2-201ENST00000568980 1570 ntBASIC29.16■■■□□ 2.26
SLC44A3Q8N4M1 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC29.11■■■□□ 2.25
SLC44A3Q8N4M1 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC29.1■■■□□ 2.25
SLC44A3Q8N4M1 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC29.09■■■□□ 2.25
SLC44A3Q8N4M1 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC29.08■■■□□ 2.25
SLC44A3Q8N4M1 PPP1R1A-201ENST00000257905 1826 ntAPPRIS P1 TSL 1 (best) BASIC29.08■■■□□ 2.25
SLC44A3Q8N4M1 EBPL-202ENST00000378268 680 ntTSL 3 BASIC29.07■■■□□ 2.24
SLC44A3Q8N4M1 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC29.07■■■□□ 2.24
SLC44A3Q8N4M1 MIR3665-201ENST00000578708 105 ntBASIC29.06■■■□□ 2.24
SLC44A3Q8N4M1 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC29.05■■■□□ 2.24
SLC44A3Q8N4M1 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC29.05■■■□□ 2.24
SLC44A3Q8N4M1 ABHD17AP4-201ENST00000411545 909 ntBASIC29.05■■■□□ 2.24
SLC44A3Q8N4M1 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC29.05■■■□□ 2.24
SLC44A3Q8N4M1 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC29.05■■■□□ 2.24
SLC44A3Q8N4M1 GIPC1-202ENST00000393028 1483 ntTSL 3 BASIC29.04■■■□□ 2.24
SLC44A3Q8N4M1 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC29.04■■■□□ 2.24
SLC44A3Q8N4M1 MIR7108-201ENST00000614319 87 ntBASIC29.02■■■□□ 2.24
SLC44A3Q8N4M1 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC29■■■□□ 2.23
SLC44A3Q8N4M1 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC29■■■□□ 2.23
SLC44A3Q8N4M1 LTB4R2-204ENST00000533293 1515 ntAPPRIS P1 TSL 1 (best) BASIC28.98■■■□□ 2.23
SLC44A3Q8N4M1 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC28.97■■■□□ 2.23
SLC44A3Q8N4M1 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC28.96■■■□□ 2.23
SLC44A3Q8N4M1 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC28.96■■■□□ 2.23
SLC44A3Q8N4M1 AC087741.3-201ENST00000624270 1347 ntBASIC28.94■■■□□ 2.22
SLC44A3Q8N4M1 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC28.94■■■□□ 2.22
SLC44A3Q8N4M1 TPRG1L-201ENST00000344579 2189 ntTSL 1 (best) BASIC28.92■■■□□ 2.22
SLC44A3Q8N4M1 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC28.92■■■□□ 2.22
SLC44A3Q8N4M1 DUX4L28-201ENST00000623687 678 ntBASIC28.9■■■□□ 2.22
SLC44A3Q8N4M1 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC28.9■■■□□ 2.22
SLC44A3Q8N4M1 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC28.9■■■□□ 2.22
SLC44A3Q8N4M1 MLEC-202ENST00000412616 841 ntTSL 3 BASIC28.89■■■□□ 2.22
SLC44A3Q8N4M1 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC28.89■■■□□ 2.22
SLC44A3Q8N4M1 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC28.88■■■□□ 2.21
SLC44A3Q8N4M1 PVT1-219ENST00000523427 938 ntTSL 3 BASIC28.87■■■□□ 2.21
SLC44A3Q8N4M1 CHML-205ENST00000638160 705 ntTSL 3 BASIC28.87■■■□□ 2.21
SLC44A3Q8N4M1 MIR762-201ENST00000390236 83 ntBASIC28.83■■■□□ 2.21
SLC44A3Q8N4M1 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC28.81■■■□□ 2.2
SLC44A3Q8N4M1 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC28.8■■■□□ 2.2
SLC44A3Q8N4M1 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC28.8■■■□□ 2.2
SLC44A3Q8N4M1 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC28.8■■■□□ 2.2
SLC44A3Q8N4M1 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC28.79■■■□□ 2.2
SLC44A3Q8N4M1 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC28.79■■■□□ 2.2
SLC44A3Q8N4M1 AC044849.2-201ENST00000606596 710 ntBASIC28.79■■■□□ 2.2
SLC44A3Q8N4M1 AC005559.1-201ENST00000589661 871 ntBASIC28.77■■■□□ 2.2
SLC44A3Q8N4M1 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC28.77■■■□□ 2.2
SLC44A3Q8N4M1 GNB5-202ENST00000358784 1735 ntAPPRIS ALT1 TSL 1 (best) BASIC28.75■■■□□ 2.19
SLC44A3Q8N4M1 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC28.73■■■□□ 2.19
SLC44A3Q8N4M1 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC28.73■■■□□ 2.19
SLC44A3Q8N4M1 MBP-237ENST00000579129 1052 ntTSL 5 BASIC28.72■■■□□ 2.19
SLC44A3Q8N4M1 MAPK3-202ENST00000322266 1743 ntTSL 5 BASIC28.7■■■□□ 2.19
SLC44A3Q8N4M1 HLA-V-202ENST00000446817 847 ntBASIC28.7■■■□□ 2.18
SLC44A3Q8N4M1 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC28.7■■■□□ 2.18
SLC44A3Q8N4M1 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC28.7■■■□□ 2.18
SLC44A3Q8N4M1 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC28.69■■■□□ 2.18
SLC44A3Q8N4M1 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC28.69■■■□□ 2.18
SLC44A3Q8N4M1 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC28.69■■■□□ 2.18
SLC44A3Q8N4M1 PPP2CB-201ENST00000221138 2006 ntAPPRIS P1 TSL 1 (best) BASIC28.69■■■□□ 2.18
SLC44A3Q8N4M1 CRIP2-201ENST00000329146 1857 ntAPPRIS P1 TSL 1 (best) BASIC28.68■■■□□ 2.18
SLC44A3Q8N4M1 NFKBIA-209ENST00000557389 1537 ntTSL 2 BASIC28.68■■■□□ 2.18
SLC44A3Q8N4M1 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC28.68■■■□□ 2.18
SLC44A3Q8N4M1 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC28.67■■■□□ 2.18
SLC44A3Q8N4M1 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC28.67■■■□□ 2.18
SLC44A3Q8N4M1 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC28.67■■■□□ 2.18
SLC44A3Q8N4M1 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC28.66■■■□□ 2.18
SLC44A3Q8N4M1 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC28.66■■■□□ 2.18
SLC44A3Q8N4M1 CYP26C1-201ENST00000285949 1569 ntAPPRIS P1 TSL 1 (best) BASIC28.66■■■□□ 2.18
SLC44A3Q8N4M1 RAB12-201ENST00000329286 2137 ntAPPRIS P1 TSL 1 (best) BASIC28.65■■■□□ 2.18
SLC44A3Q8N4M1 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC28.64■■■□□ 2.18
SLC44A3Q8N4M1 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC28.62■■■□□ 2.17
SLC44A3Q8N4M1 AKR1E2-201ENST00000298375 1566 ntAPPRIS P1 TSL 1 (best) BASIC28.6■■■□□ 2.17
SLC44A3Q8N4M1 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC28.6■■■□□ 2.17
SLC44A3Q8N4M1 ARTN-202ENST00000372359 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC28.59■■■□□ 2.17
SLC44A3Q8N4M1 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC28.58■■■□□ 2.17
SLC44A3Q8N4M1 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC28.58■■■□□ 2.17
SLC44A3Q8N4M1 ZNRF2P2-203ENST00000454624 420 ntBASIC28.58■■■□□ 2.17
SLC44A3Q8N4M1 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC28.57■■■□□ 2.16
SLC44A3Q8N4M1 DENR-202ENST00000455982 1052 ntTSL 5 BASIC28.57■■■□□ 2.16
SLC44A3Q8N4M1 BOD1-206ENST00000480951 814 ntTSL 2 BASIC28.57■■■□□ 2.16
SLC44A3Q8N4M1 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC28.56■■■□□ 2.16
SLC44A3Q8N4M1 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC28.56■■■□□ 2.16
SLC44A3Q8N4M1 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC28.55■■■□□ 2.16
SLC44A3Q8N4M1 B4GALT7-201ENST00000029410 1747 ntAPPRIS P1 TSL 1 (best) BASIC28.54■■■□□ 2.16
SLC44A3Q8N4M1 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC28.54■■■□□ 2.16
SLC44A3Q8N4M1 CTDNEP1-208ENST00000573600 1724 ntAPPRIS P1 TSL 5 BASIC28.53■■■□□ 2.16
SLC44A3Q8N4M1 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC28.53■■■□□ 2.16
SLC44A3Q8N4M1 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC28.53■■■□□ 2.16
SLC44A3Q8N4M1 AGAP1-204ENST00000409457 2165 ntTSL 1 (best) BASIC28.5■■■□□ 2.15
SLC44A3Q8N4M1 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC28.49■■■□□ 2.15
SLC44A3Q8N4M1 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC28.48■■■□□ 2.15
Retrieved 100 of 98,524 protein–RNA pairs in 33.5 ms