Protein–RNA interactions for Protein: Q86UV5

USP48, Ubiquitin carboxyl-terminal hydrolase 48, humanhuman

Predictions only

Length 1,035 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP48Q86UV5 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC34.23■■■■□ 3.07
USP48Q86UV5 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC34.2■■■■□ 3.07
USP48Q86UV5 CSNK1E-205ENST00000405675 2127 ntTSL 5 BASIC34.19■■■■□ 3.06
USP48Q86UV5 LMO2-202ENST00000395833 1687 ntAPPRIS P1 TSL 1 (best) BASIC34.18■■■■□ 3.06
USP48Q86UV5 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC34.17■■■■□ 3.06
USP48Q86UV5 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC34.17■■■■□ 3.06
USP48Q86UV5 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC34.17■■■■□ 3.06
USP48Q86UV5 AP006261.1-201ENST00000584783 668 ntBASIC34.15■■■■□ 3.06
USP48Q86UV5 FEZF2-203ENST00000486811 2001 ntAPPRIS P1 TSL 5 BASIC34.14■■■■□ 3.06
USP48Q86UV5 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC34.1■■■■□ 3.05
USP48Q86UV5 ARRDC1-201ENST00000371421 1586 ntAPPRIS P1 TSL 1 (best) BASIC34.1■■■■□ 3.05
USP48Q86UV5 FGF3-201ENST00000334134 892 ntAPPRIS P1 TSL 1 (best) BASIC34.09■■■■□ 3.05
USP48Q86UV5 DUSP15-202ENST00000339738 1454 ntAPPRIS P1 TSL 1 (best) BASIC34.08■■■■□ 3.05
USP48Q86UV5 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC34.08■■■■□ 3.05
USP48Q86UV5 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC34.08■■■■□ 3.05
USP48Q86UV5 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC34.08■■■■□ 3.05
USP48Q86UV5 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC34.08■■■■□ 3.05
USP48Q86UV5 AL391121.1-201ENST00000607967 1349 ntBASIC34.07■■■■□ 3.05
USP48Q86UV5 AC145285.7-201ENST00000614819 1539 ntBASIC34.04■■■■□ 3.04
USP48Q86UV5 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC34.04■■■■□ 3.04
USP48Q86UV5 RAB43-207ENST00000476465 1627 ntTSL 3 BASIC34.04■■■■□ 3.04
USP48Q86UV5 MVK-208ENST00000539696 608 ntTSL 5 BASIC34.03■■■■□ 3.04
USP48Q86UV5 CTDNEP1-208ENST00000573600 1724 ntAPPRIS P1 TSL 5 BASIC34■■■■□ 3.03
USP48Q86UV5 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC33.98■■■■□ 3.03
USP48Q86UV5 GSC2-201ENST00000086933 1033 ntAPPRIS P1 TSL 5 BASIC33.97■■■■□ 3.03
USP48Q86UV5 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC33.95■■■■□ 3.03
USP48Q86UV5 MIR7108-201ENST00000614319 87 ntBASIC33.95■■■■□ 3.03
USP48Q86UV5 PPP1CC-202ENST00000340766 1472 ntTSL 2 BASIC33.95■■■■□ 3.02
USP48Q86UV5 GRASP-206ENST00000552049 1688 ntTSL 1 (best) BASIC33.94■■■■□ 3.02
USP48Q86UV5 AGAP1-204ENST00000409457 2165 ntTSL 1 (best) BASIC33.94■■■■□ 3.02
USP48Q86UV5 ABHD17AP4-201ENST00000411545 909 ntBASIC33.94■■■■□ 3.02
USP48Q86UV5 TUBB6-201ENST00000317702 2064 ntAPPRIS P1 TSL 1 (best) BASIC33.93■■■■□ 3.02
USP48Q86UV5 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC33.93■■■■□ 3.02
USP48Q86UV5 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC33.92■■■■□ 3.02
USP48Q86UV5 HNRNPLP2-201ENST00000568980 1570 ntBASIC33.91■■■■□ 3.02
USP48Q86UV5 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC33.9■■■■□ 3.02
USP48Q86UV5 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC33.9■■■■□ 3.02
USP48Q86UV5 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC33.9■■■■□ 3.02
USP48Q86UV5 SERINC2-201ENST00000373709 1997 ntAPPRIS P1 TSL 1 (best) BASIC33.9■■■■□ 3.02
USP48Q86UV5 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC33.89■■■■□ 3.02
USP48Q86UV5 AL133380.1-201ENST00000506013 324 ntBASIC33.88■■■■□ 3.01
USP48Q86UV5 PCYT2-205ENST00000570391 1857 ntTSL 2 BASIC33.88■■■■□ 3.01
USP48Q86UV5 SDCCAG3-202ENST00000357365 2304 ntAPPRIS P4 TSL 5 BASIC33.85■■■■□ 3.01
USP48Q86UV5 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC33.85■■■■□ 3.01
USP48Q86UV5 PVT1-219ENST00000523427 938 ntTSL 3 BASIC33.83■■■■□ 3.01
USP48Q86UV5 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC33.82■■■■□ 3
USP48Q86UV5 NADK2-202ENST00000381937 2243 ntAPPRIS P1 TSL 2 BASIC33.81■■■■□ 3
USP48Q86UV5 STK25-202ENST00000401869 2251 ntAPPRIS P1 TSL 1 (best) BASIC33.81■■■■□ 3
USP48Q86UV5 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC33.81■■■■□ 3
USP48Q86UV5 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC33.8■■■■□ 3
USP48Q86UV5 MIR3665-201ENST00000578708 105 ntBASIC33.79■■■■□ 3
USP48Q86UV5 BRF1-213ENST00000548421 1452 ntTSL 1 (best) BASIC33.77■■■■□ 3
USP48Q86UV5 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC33.77■■■■□ 3
USP48Q86UV5 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC33.76■■■■□ 3
USP48Q86UV5 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC33.76■■■□□ 2.99
USP48Q86UV5 EBPL-202ENST00000378268 680 ntTSL 3 BASIC33.75■■■□□ 2.99
USP48Q86UV5 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC33.75■■■□□ 2.99
USP48Q86UV5 SAMD1-202ENST00000533683 2164 ntAPPRIS P5 TSL 1 (best) BASIC33.74■■■□□ 2.99
USP48Q86UV5 POU3F1-201ENST00000373012 2184 ntAPPRIS P1 BASIC33.73■■■□□ 2.99
USP48Q86UV5 MAPK1-202ENST00000398822 1487 ntAPPRIS P1 TSL 1 (best) BASIC33.72■■■□□ 2.99
USP48Q86UV5 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC33.72■■■□□ 2.99
USP48Q86UV5 SDCCAG3-204ENST00000371725 2129 ntAPPRIS ALT2 TSL 5 BASIC33.7■■■□□ 2.99
USP48Q86UV5 MLEC-202ENST00000412616 841 ntTSL 3 BASIC33.69■■■□□ 2.98
USP48Q86UV5 AC087741.3-201ENST00000624270 1347 ntBASIC33.69■■■□□ 2.98
USP48Q86UV5 UBP1-201ENST00000283628 2074 ntAPPRIS P3 TSL 2 BASIC33.68■■■□□ 2.98
USP48Q86UV5 SH3GLB2-201ENST00000372554 1985 ntTSL 1 (best) BASIC33.66■■■□□ 2.98
USP48Q86UV5 MBP-237ENST00000579129 1052 ntTSL 5 BASIC33.65■■■□□ 2.98
USP48Q86UV5 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC33.64■■■□□ 2.98
USP48Q86UV5 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC33.64■■■□□ 2.98
USP48Q86UV5 TPRG1L-201ENST00000344579 2189 ntTSL 1 (best) BASIC33.64■■■□□ 2.98
USP48Q86UV5 CHST12-204ENST00000618655 2131 ntAPPRIS P1 TSL 1 (best) BASIC33.64■■■□□ 2.98
USP48Q86UV5 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC33.63■■■□□ 2.97
USP48Q86UV5 DUX4L28-201ENST00000623687 678 ntBASIC33.63■■■□□ 2.97
USP48Q86UV5 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC33.63■■■□□ 2.97
USP48Q86UV5 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC33.63■■■□□ 2.97
USP48Q86UV5 ST7-208ENST00000393451 2110 ntAPPRIS P1 TSL 1 (best) BASIC33.62■■■□□ 2.97
USP48Q86UV5 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC33.62■■■□□ 2.97
USP48Q86UV5 HLA-V-202ENST00000446817 847 ntBASIC33.61■■■□□ 2.97
USP48Q86UV5 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC33.57■■■□□ 2.96
USP48Q86UV5 GIPC1-202ENST00000393028 1483 ntTSL 3 BASIC33.55■■■□□ 2.96
USP48Q86UV5 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC33.53■■■□□ 2.96
USP48Q86UV5 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC33.53■■■□□ 2.96
USP48Q86UV5 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC33.52■■■□□ 2.96
USP48Q86UV5 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC33.51■■■□□ 2.95
USP48Q86UV5 CHML-205ENST00000638160 705 ntTSL 3 BASIC33.51■■■□□ 2.95
USP48Q86UV5 AC044849.2-201ENST00000606596 710 ntBASIC33.5■■■□□ 2.95
USP48Q86UV5 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC33.5■■■□□ 2.95
USP48Q86UV5 TFEB-204ENST00000373033 2331 ntAPPRIS P1 TSL 1 (best) BASIC33.5■■■□□ 2.95
USP48Q86UV5 ADRA2C-201ENST00000330055 2129 ntAPPRIS P1 BASIC33.49■■■□□ 2.95
USP48Q86UV5 C7orf50-202ENST00000397098 2131 ntAPPRIS P2 TSL 1 (best) BASIC33.49■■■□□ 2.95
USP48Q86UV5 MIR762-201ENST00000390236 83 ntBASIC33.49■■■□□ 2.95
USP48Q86UV5 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC33.47■■■□□ 2.95
USP48Q86UV5 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC33.47■■■□□ 2.95
USP48Q86UV5 DPP6-204ENST00000406326 2012 ntTSL 1 (best) BASIC33.46■■■□□ 2.95
USP48Q86UV5 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC33.45■■■□□ 2.95
USP48Q86UV5 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC33.45■■■□□ 2.95
USP48Q86UV5 SIAH1-203ENST00000394725 2147 ntAPPRIS P3 TSL 1 (best) BASIC33.44■■■□□ 2.94
USP48Q86UV5 PPP1R1A-201ENST00000257905 1826 ntAPPRIS P1 TSL 1 (best) BASIC33.44■■■□□ 2.94
USP48Q86UV5 AC005559.1-201ENST00000589661 871 ntBASIC33.42■■■□□ 2.94
USP48Q86UV5 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC33.4■■■□□ 2.94
Retrieved 100 of 98,524 protein–RNA pairs in 11.5 ms