Protein–RNA interactions for Protein: Q5TC82

RC3H1, Roquin-1, humanhuman

Known RBP Predictions only

Length 1,133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RC3H1Q5TC82 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC36.28■■■■□ 3.4
RC3H1Q5TC82 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC36.28■■■■□ 3.4
RC3H1Q5TC82 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC36.21■■■■□ 3.39
RC3H1Q5TC82 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC36.21■■■■□ 3.39
RC3H1Q5TC82 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC36.21■■■■□ 3.39
RC3H1Q5TC82 PPP1R1A-201ENST00000257905 1826 ntAPPRIS P1 TSL 1 (best) BASIC36.18■■■■□ 3.38
RC3H1Q5TC82 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC36.17■■■■□ 3.38
RC3H1Q5TC82 HNRNPLP2-201ENST00000568980 1570 ntBASIC36.15■■■■□ 3.38
RC3H1Q5TC82 GIPC1-202ENST00000393028 1483 ntTSL 3 BASIC36.11■■■■□ 3.37
RC3H1Q5TC82 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC36.08■■■■□ 3.37
RC3H1Q5TC82 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC36.08■■■■□ 3.37
RC3H1Q5TC82 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC36.08■■■■□ 3.37
RC3H1Q5TC82 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC36.07■■■■□ 3.36
RC3H1Q5TC82 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC36.07■■■■□ 3.36
RC3H1Q5TC82 LTB4R2-204ENST00000533293 1515 ntAPPRIS P1 TSL 1 (best) BASIC36.06■■■■□ 3.36
RC3H1Q5TC82 EBPL-202ENST00000378268 680 ntTSL 3 BASIC36.03■■■■□ 3.36
RC3H1Q5TC82 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC36.02■■■■□ 3.36
RC3H1Q5TC82 TPRG1L-201ENST00000344579 2189 ntTSL 1 (best) BASIC36.02■■■■□ 3.36
RC3H1Q5TC82 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC36.01■■■■□ 3.36
RC3H1Q5TC82 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC35.99■■■■□ 3.35
RC3H1Q5TC82 MIR3665-201ENST00000578708 105 ntBASIC35.99■■■■□ 3.35
RC3H1Q5TC82 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC35.98■■■■□ 3.35
RC3H1Q5TC82 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC35.98■■■■□ 3.35
RC3H1Q5TC82 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC35.96■■■■□ 3.35
RC3H1Q5TC82 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC35.95■■■■□ 3.35
RC3H1Q5TC82 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC35.94■■■■□ 3.34
RC3H1Q5TC82 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC35.93■■■■□ 3.34
RC3H1Q5TC82 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC35.93■■■■□ 3.34
RC3H1Q5TC82 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC35.92■■■■□ 3.34
RC3H1Q5TC82 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC35.92■■■■□ 3.34
RC3H1Q5TC82 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC35.88■■■■□ 3.33
RC3H1Q5TC82 ABHD17AP4-201ENST00000411545 909 ntBASIC35.87■■■■□ 3.33
RC3H1Q5TC82 AC087741.3-201ENST00000624270 1347 ntBASIC35.85■■■■□ 3.33
RC3H1Q5TC82 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC35.83■■■■□ 3.33
RC3H1Q5TC82 DUX4L28-201ENST00000623687 678 ntBASIC35.81■■■■□ 3.32
RC3H1Q5TC82 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC35.81■■■■□ 3.32
RC3H1Q5TC82 MAPK3-202ENST00000322266 1743 ntTSL 5 BASIC35.8■■■■□ 3.32
RC3H1Q5TC82 MIR7108-201ENST00000614319 87 ntBASIC35.79■■■■□ 3.32
RC3H1Q5TC82 CHML-205ENST00000638160 705 ntTSL 3 BASIC35.79■■■■□ 3.32
RC3H1Q5TC82 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC35.78■■■■□ 3.32
RC3H1Q5TC82 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC35.78■■■■□ 3.32
RC3H1Q5TC82 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC35.78■■■■□ 3.32
RC3H1Q5TC82 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC35.76■■■■□ 3.32
RC3H1Q5TC82 MLEC-202ENST00000412616 841 ntTSL 3 BASIC35.75■■■■□ 3.31
RC3H1Q5TC82 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC35.75■■■■□ 3.31
RC3H1Q5TC82 MIR762-201ENST00000390236 83 ntBASIC35.73■■■■□ 3.31
RC3H1Q5TC82 GNB5-202ENST00000358784 1735 ntAPPRIS ALT1 TSL 1 (best) BASIC35.73■■■■□ 3.31
RC3H1Q5TC82 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC35.7■■■■□ 3.31
RC3H1Q5TC82 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC35.7■■■■□ 3.31
RC3H1Q5TC82 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC35.7■■■■□ 3.31
RC3H1Q5TC82 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC35.7■■■■□ 3.31
RC3H1Q5TC82 PPP2CB-201ENST00000221138 2006 ntAPPRIS P1 TSL 1 (best) BASIC35.67■■■■□ 3.3
RC3H1Q5TC82 CYP26C1-201ENST00000285949 1569 ntAPPRIS P1 TSL 1 (best) BASIC35.67■■■■□ 3.3
RC3H1Q5TC82 CRIP2-201ENST00000329146 1857 ntAPPRIS P1 TSL 1 (best) BASIC35.67■■■■□ 3.3
RC3H1Q5TC82 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC35.66■■■■□ 3.3
RC3H1Q5TC82 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC35.66■■■■□ 3.3
RC3H1Q5TC82 AC044849.2-201ENST00000606596 710 ntBASIC35.65■■■■□ 3.3
RC3H1Q5TC82 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC35.65■■■■□ 3.3
RC3H1Q5TC82 NFKBIA-209ENST00000557389 1537 ntTSL 2 BASIC35.63■■■■□ 3.29
RC3H1Q5TC82 AC005559.1-201ENST00000589661 871 ntBASIC35.63■■■■□ 3.29
RC3H1Q5TC82 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC35.63■■■■□ 3.29
RC3H1Q5TC82 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC35.62■■■■□ 3.29
RC3H1Q5TC82 AKR1E2-201ENST00000298375 1566 ntAPPRIS P1 TSL 1 (best) BASIC35.61■■■■□ 3.29
RC3H1Q5TC82 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC35.61■■■■□ 3.29
RC3H1Q5TC82 ARTN-202ENST00000372359 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC35.59■■■■□ 3.29
RC3H1Q5TC82 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC35.59■■■■□ 3.29
RC3H1Q5TC82 CTDNEP1-208ENST00000573600 1724 ntAPPRIS P1 TSL 5 BASIC35.57■■■■□ 3.29
RC3H1Q5TC82 PVT1-219ENST00000523427 938 ntTSL 3 BASIC35.56■■■■□ 3.28
RC3H1Q5TC82 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC35.56■■■■□ 3.28
RC3H1Q5TC82 B4GALT7-201ENST00000029410 1747 ntAPPRIS P1 TSL 1 (best) BASIC35.55■■■■□ 3.28
RC3H1Q5TC82 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC35.55■■■■□ 3.28
RC3H1Q5TC82 AGAP1-204ENST00000409457 2165 ntTSL 1 (best) BASIC35.54■■■■□ 3.28
RC3H1Q5TC82 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC35.54■■■■□ 3.28
RC3H1Q5TC82 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC35.53■■■■□ 3.28
RC3H1Q5TC82 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC35.52■■■■□ 3.28
RC3H1Q5TC82 DENR-202ENST00000455982 1052 ntTSL 5 BASIC35.5■■■■□ 3.27
RC3H1Q5TC82 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC35.49■■■■□ 3.27
RC3H1Q5TC82 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC35.48■■■■□ 3.27
RC3H1Q5TC82 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC35.48■■■■□ 3.27
RC3H1Q5TC82 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC35.48■■■■□ 3.27
RC3H1Q5TC82 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC35.47■■■■□ 3.27
RC3H1Q5TC82 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC35.44■■■■□ 3.26
RC3H1Q5TC82 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC35.44■■■■□ 3.26
RC3H1Q5TC82 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC35.43■■■■□ 3.26
RC3H1Q5TC82 MBP-237ENST00000579129 1052 ntTSL 5 BASIC35.42■■■■□ 3.26
RC3H1Q5TC82 PABPN1-201ENST00000216727 2001 ntAPPRIS P2 TSL 1 (best) BASIC35.41■■■■□ 3.26
RC3H1Q5TC82 HLA-V-202ENST00000446817 847 ntBASIC35.39■■■■□ 3.26
RC3H1Q5TC82 SFRP5-201ENST00000266066 1836 ntAPPRIS P1 TSL 1 (best) BASIC35.39■■■■□ 3.26
RC3H1Q5TC82 MPST-201ENST00000341116 1504 ntAPPRIS P1 TSL 5 BASIC35.38■■■■□ 3.25
RC3H1Q5TC82 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC35.36■■■■□ 3.25
RC3H1Q5TC82 AC116565.1-201ENST00000610212 2421 ntAPPRIS P1 BASIC35.35■■■■□ 3.25
RC3H1Q5TC82 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC35.35■■■■□ 3.25
RC3H1Q5TC82 BOD1-206ENST00000480951 814 ntTSL 2 BASIC35.35■■■■□ 3.25
RC3H1Q5TC82 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC35.34■■■■□ 3.25
RC3H1Q5TC82 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC35.34■■■■□ 3.25
RC3H1Q5TC82 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC35.34■■■■□ 3.25
RC3H1Q5TC82 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC35.34■■■■□ 3.25
RC3H1Q5TC82 ZNRF2P2-203ENST00000454624 420 ntBASIC35.33■■■■□ 3.25
RC3H1Q5TC82 RAB12-201ENST00000329286 2137 ntAPPRIS P1 TSL 1 (best) BASIC35.33■■■■□ 3.25
RC3H1Q5TC82 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC35.32■■■■□ 3.25
Retrieved 100 of 98,524 protein–RNA pairs in 84.6 ms