Protein–RNA interactions for Protein: Q5TC82

RC3H1, Roquin-1, humanhuman

Known RBP Predictions only

Length 1,133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RC3H1Q5TC82 FBLL1-201ENST00000338333 1519 ntAPPRIS P1 BASIC44.57■■■■■ 4.73
RC3H1Q5TC82 SSSCA1-205ENST00000527920 806 ntTSL 3 BASIC44.24■■■■■ 4.67
RC3H1Q5TC82 HRAS-203ENST00000397596 1100 ntAPPRIS P1 TSL 3 BASIC43.62■■■■■ 4.57
RC3H1Q5TC82 PPP1CA-203ENST00000376745 1476 ntAPPRIS P1 TSL 1 (best) BASIC43.5■■■■■ 4.55
RC3H1Q5TC82 AES-202ENST00000327141 1608 ntAPPRIS P1 TSL 1 (best) BASIC43.04■■■■■ 4.48
RC3H1Q5TC82 CSNK1E-204ENST00000403904 1580 ntAPPRIS P1 TSL 5 BASIC42.78■■■■■ 4.44
RC3H1Q5TC82 TCF15-201ENST00000246080 1555 ntAPPRIS P1 TSL 1 (best) BASIC42.61■■■■■ 4.41
RC3H1Q5TC82 AL356512.1-201ENST00000607453 1739 ntBASIC42.42■■■■■ 4.38
RC3H1Q5TC82 ANKRD60-201ENST00000457363 1038 ntAPPRIS P1 TSL 5 BASIC42.33■■■■■ 4.37
RC3H1Q5TC82 PPP2CB-204ENST00000518564 691 ntTSL 3 BASIC42.09■■■■■ 4.33
RC3H1Q5TC82 CACNG8-202ENST00000638874 1278 ntAPPRIS P2 TSL 1 (best) BASIC41.94■■■■■ 4.3
RC3H1Q5TC82 OLFM1-208ENST00000392991 1057 ntTSL 2 BASIC41.93■■■■■ 4.3
RC3H1Q5TC82 TAF5L-202ENST00000366674 492 ntTSL 3 BASIC41.88■■■■■ 4.29
RC3H1Q5TC82 CDV3-203ENST00000431519 955 ntTSL 1 (best) BASIC41.79■■■■■ 4.28
RC3H1Q5TC82 GALR3-201ENST00000249041 1157 ntAPPRIS P1 TSL 1 (best) BASIC41.52■■■■■ 4.24
RC3H1Q5TC82 ZFYVE21-201ENST00000216602 1521 ntAPPRIS ALT2 TSL 2 BASIC41.5■■■■■ 4.23
RC3H1Q5TC82 ALYREF-202ENST00000505490 1088 ntAPPRIS P1 TSL 1 (best) BASIC41.43■■■■■ 4.22
RC3H1Q5TC82 PHF10-201ENST00000339209 1719 ntAPPRIS P4 TSL 1 (best) BASIC41.4■■■■■ 4.22
RC3H1Q5TC82 MPND-201ENST00000262966 1567 ntAPPRIS P3 TSL 1 (best) BASIC41.39■■■■■ 4.22
RC3H1Q5TC82 CMTM4-202ENST00000394106 1187 ntAPPRIS P1 TSL 1 (best) BASIC40.92■■■■■ 4.14
RC3H1Q5TC82 CMTM4-204ENST00000563952 1023 ntTSL 1 (best) BASIC40.92■■■■■ 4.14
RC3H1Q5TC82 HES6-203ENST00000409160 1600 ntTSL 2 BASIC40.87■■■■■ 4.13
RC3H1Q5TC82 AL357033.3-201ENST00000620143 614 ntTSL 3 BASIC40.85■■■■■ 4.13
RC3H1Q5TC82 FAM89B-203ENST00000530349 1263 ntAPPRIS P1 TSL 2 BASIC40.8■■■■■ 4.12
RC3H1Q5TC82 GIPC1-205ENST00000586027 1386 ntAPPRIS P1 TSL 2 BASIC40.79■■■■■ 4.12
RC3H1Q5TC82 INO80B-201ENST00000233331 1261 ntAPPRIS P1 TSL 1 (best) BASIC40.74■■■■■ 4.11
RC3H1Q5TC82 INO80B-203ENST00000409917 796 ntTSL 2 BASIC40.64■■■■■ 4.1
RC3H1Q5TC82 CYBA-201ENST00000261623 797 ntAPPRIS P1 TSL 1 (best) BASIC40.63■■■■■ 4.09
RC3H1Q5TC82 MAF-203ENST00000569649 1217 ntAPPRIS ALT2 TSL 5 BASIC40.6■■■■■ 4.09
RC3H1Q5TC82 PTF1A-201ENST00000376504 1537 ntAPPRIS P1 TSL 1 (best) BASIC40.58■■■■■ 4.09
RC3H1Q5TC82 PRR5-217ENST00000617066 1726 ntTSL 5 BASIC40.55■■■■■ 4.08
RC3H1Q5TC82 PRR5-216ENST00000611394 1843 ntTSL 2 BASIC40.34■■■■■ 4.05
RC3H1Q5TC82 AC006077.2-201ENST00000623591 457 ntBASIC40.31■■■■■ 4.04
RC3H1Q5TC82 ZNRF2P1-201ENST00000441407 443 ntBASIC40.28■■■■■ 4.04
RC3H1Q5TC82 AC008738.5-201ENST00000587312 482 ntTSL 3 BASIC40.15■■■■■ 4.02
RC3H1Q5TC82 AC015813.7-201ENST00000623294 581 ntBASIC40.07■■■■■ 4.01
RC3H1Q5TC82 SLC25A28-201ENST00000370495 1451 ntAPPRIS P1 TSL 1 (best) BASIC39.96■■■■□ 3.99
RC3H1Q5TC82 SATB1-AS1-216ENST00000598149 1119 ntTSL 2 BASIC39.96■■■■□ 3.99
RC3H1Q5TC82 ARTN-201ENST00000372354 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC39.77■■■■□ 3.96
RC3H1Q5TC82 PRELID2-202ENST00000394450 1102 ntTSL 1 (best) BASIC39.73■■■■□ 3.95
RC3H1Q5TC82 CSNK1E-206ENST00000413574 1631 ntTSL 5 BASIC39.62■■■■□ 3.93
RC3H1Q5TC82 C11orf68-202ENST00000449692 1559 ntAPPRIS P3 TSL 1 (best) BASIC39.41■■■■□ 3.9
RC3H1Q5TC82 NT5DC2-203ENST00000459839 1639 ntTSL 1 (best) BASIC39.36■■■■□ 3.89
RC3H1Q5TC82 FAM89B-202ENST00000449319 1337 ntTSL 1 (best) BASIC39.34■■■■□ 3.89
RC3H1Q5TC82 UBE2M-201ENST00000253023 1508 ntAPPRIS P1 TSL 1 (best) BASIC39.34■■■■□ 3.89
RC3H1Q5TC82 AP002365.1-201ENST00000603448 772 ntBASIC39.24■■■■□ 3.87
RC3H1Q5TC82 NKAIN4-203ENST00000370316 1430 ntAPPRIS P1 TSL 1 (best) BASIC39.22■■■■□ 3.87
RC3H1Q5TC82 HAGHL-201ENST00000341413 1701 ntTSL 2 BASIC39.11■■■■□ 3.85
RC3H1Q5TC82 NECTIN3-201ENST00000319792 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC39.07■■■■□ 3.84
RC3H1Q5TC82 CLEC3B-201ENST00000296130 936 ntAPPRIS P1 TSL 1 (best) BASIC39.04■■■■□ 3.84
RC3H1Q5TC82 FAM58A-202ENST00000440428 1164 ntAPPRIS P2 TSL 2 BASIC38.99■■■■□ 3.83
RC3H1Q5TC82 H2AFV-202ENST00000308153 752 ntAPPRIS P4 TSL 1 (best) BASIC38.98■■■■□ 3.83
RC3H1Q5TC82 CAPNS1-206ENST00000588815 1471 ntAPPRIS P2 TSL 1 (best) BASIC38.96■■■■□ 3.83
RC3H1Q5TC82 HMGB1-205ENST00000399494 1282 ntAPPRIS P1 TSL 2 BASIC38.95■■■■□ 3.83
RC3H1Q5TC82 AC079848.1-201ENST00000511301 327 ntTSL 3 BASIC38.95■■■■□ 3.83
RC3H1Q5TC82 MBD2-202ENST00000398398 1237 ntTSL 2 BASIC38.88■■■■□ 3.81
RC3H1Q5TC82 MBD2-205ENST00000583046 1182 ntTSL 1 (best) BASIC38.88■■■■□ 3.81
RC3H1Q5TC82 FGF2-203ENST00000614010 867 ntTSL 1 (best) BASIC38.88■■■■□ 3.81
RC3H1Q5TC82 AC005524.1-203ENST00000586528 451 ntTSL 3 BASIC38.79■■■■□ 3.8
RC3H1Q5TC82 PQLC1-211ENST00000590381 1247 ntTSL 2 BASIC38.79■■■■□ 3.8
RC3H1Q5TC82 SEPT3-204ENST00000406029 1866 ntTSL 5 BASIC38.79■■■■□ 3.8
RC3H1Q5TC82 ARTN-211ENST00000498139 1303 ntAPPRIS P4 TSL 1 (best) BASIC38.77■■■■□ 3.8
RC3H1Q5TC82 SYNGR1-202ENST00000318801 1361 ntTSL 1 (best) BASIC38.76■■■■□ 3.8
RC3H1Q5TC82 AL355297.4-201ENST00000603191 1249 ntTSL 3 BASIC38.68■■■■□ 3.78
RC3H1Q5TC82 NT5M-207ENST00000616989 1635 ntTSL 1 (best) BASIC38.66■■■■□ 3.78
RC3H1Q5TC82 LINC01578-201ENST00000553829 732 ntTSL 2 BASIC38.62■■■■□ 3.77
RC3H1Q5TC82 HOXB3-208ENST00000476342 1420 ntAPPRIS P1 TSL 1 (best) BASIC38.55■■■■□ 3.76
RC3H1Q5TC82 NRGN-201ENST00000284292 1306 ntAPPRIS P1 TSL 1 (best) BASIC38.54■■■■□ 3.76
RC3H1Q5TC82 MAP6D1-202ENST00000431348 890 ntAPPRIS ALT2 TSL 2 BASIC38.49■■■■□ 3.75
RC3H1Q5TC82 NKX1-1-201ENST00000422806 1236 ntAPPRIS P1 TSL 5 BASIC38.48■■■■□ 3.75
RC3H1Q5TC82 CBX4-202ENST00000448310 718 ntAPPRIS ALT2 TSL 3 BASIC38.43■■■■□ 3.74
RC3H1Q5TC82 METRNL-201ENST00000320095 1605 ntAPPRIS P1 TSL 1 (best) BASIC38.41■■■■□ 3.74
RC3H1Q5TC82 AP001107.7-201ENST00000533287 272 ntTSL 2 BASIC38.37■■■■□ 3.73
RC3H1Q5TC82 GSTZ1-201ENST00000216465 1338 ntAPPRIS P2 TSL 1 (best) BASIC38.35■■■■□ 3.73
RC3H1Q5TC82 CHCHD4-202ENST00000396914 1405 ntAPPRIS P1 TSL 1 (best) BASIC38.34■■■■□ 3.73
RC3H1Q5TC82 AGTRAP-204ENST00000376637 1067 ntTSL 2 BASIC38.33■■■■□ 3.73
RC3H1Q5TC82 DYNLL1-207ENST00000549989 719 ntAPPRIS P1 TSL 1 (best) BASIC38.33■■■■□ 3.73
RC3H1Q5TC82 DYNLL1-208ENST00000550178 581 ntBASIC38.33■■■■□ 3.73
RC3H1Q5TC82 RAN-202ENST00000392369 1530 ntAPPRIS P1 TSL 1 (best) BASIC38.32■■■■□ 3.72
RC3H1Q5TC82 HRH3-201ENST00000317393 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC38.31■■■■□ 3.72
RC3H1Q5TC82 MSANTD3-203ENST00000395067 1362 ntAPPRIS P1 TSL 1 (best) BASIC38.3■■■■□ 3.72
RC3H1Q5TC82 LIMCH1-211ENST00000509638 1570 ntTSL 1 (best) BASIC38.26■■■■□ 3.72
RC3H1Q5TC82 AL136373.1-201ENST00000634804 1449 ntAPPRIS P1 BASIC38.25■■■■□ 3.71
RC3H1Q5TC82 LINC01578-203ENST00000554669 578 ntTSL 5 BASIC38.23■■■■□ 3.71
RC3H1Q5TC82 SAP30-201ENST00000296504 1108 ntAPPRIS P1 TSL 1 (best) BASIC38.17■■■■□ 3.7
RC3H1Q5TC82 INAFM1-201ENST00000552360 1255 ntAPPRIS P1 BASIC38.14■■■■□ 3.7
RC3H1Q5TC82 ANAPC11-203ENST00000392376 687 ntAPPRIS P1 TSL 1 (best) BASIC38.07■■■■□ 3.68
RC3H1Q5TC82 AL031258.1-201ENST00000623562 325 ntBASIC38.07■■■■□ 3.68
RC3H1Q5TC82 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC38.06■■■■□ 3.68
RC3H1Q5TC82 NT5DC2-202ENST00000422318 1795 ntAPPRIS ALT2 TSL 5 BASIC38.03■■■■□ 3.68
RC3H1Q5TC82 ARTN-204ENST00000438616 889 ntTSL 1 (best) BASIC38.02■■■■□ 3.68
RC3H1Q5TC82 PLPP2-203ENST00000434325 1383 ntAPPRIS P1 TSL 1 (best) BASIC37.98■■■■□ 3.67
RC3H1Q5TC82 FAM149A-215ENST00000514153 2070 ntAPPRIS P2 TSL 5 BASIC37.98■■■■□ 3.67
RC3H1Q5TC82 CCM2-219ENST00000544363 1620 ntTSL 3 BASIC37.97■■■■□ 3.67
RC3H1Q5TC82 ECHS1-201ENST00000368547 1617 ntAPPRIS P1 TSL 1 (best) BASIC37.94■■■■□ 3.66
RC3H1Q5TC82 ANKRD65-203ENST00000454272 1506 ntAPPRIS P1 TSL 5 BASIC37.89■■■■□ 3.66
RC3H1Q5TC82 NRGN-202ENST00000412681 1106 ntAPPRIS P1 TSL 1 (best) BASIC37.84■■■■□ 3.65
RC3H1Q5TC82 LINC01578-204ENST00000554894 556 ntTSL 3 BASIC37.84■■■■□ 3.65
RC3H1Q5TC82 LINC01578-207ENST00000556895 802 ntTSL 2 BASIC37.84■■■■□ 3.65
RC3H1Q5TC82 PWWP2B-202ENST00000631148 2013 ntTSL 5 BASIC37.83■■■■□ 3.65
Retrieved 100 of 98,524 protein–RNA pairs in 12.1 ms