Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 HMGB1-205ENST00000399494 1282 ntAPPRIS P1 TSL 2 BASIC22.29■■□□□ 1.16
CDX1P47902 HRH3-201ENST00000317393 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC22.29■■□□□ 1.16
CDX1P47902 DPF1-204ENST00000416611 2341 ntTSL 5 BASIC22.29■■□□□ 1.16
CDX1P47902 CHST12-204ENST00000618655 2131 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
CDX1P47902 RNF126-201ENST00000292363 1694 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
CDX1P47902 GRASP-206ENST00000552049 1688 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
CDX1P47902 HAGHL-204ENST00000549114 1820 ntTSL 5 BASIC22.27■■□□□ 1.15
CDX1P47902 RAMP2-AS1-202ENST00000589716 1985 ntTSL 5 BASIC22.26■■□□□ 1.15
CDX1P47902 SDCCAG3-202ENST00000357365 2304 ntAPPRIS P4 TSL 5 BASIC22.25■■□□□ 1.15
CDX1P47902 ARRDC1-201ENST00000371421 1586 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
CDX1P47902 MSANTD3-203ENST00000395067 1362 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
CDX1P47902 CAPNS1-201ENST00000246533 1918 ntAPPRIS P2 TSL 1 (best) BASIC22.24■■□□□ 1.15
CDX1P47902 BRF1-213ENST00000548421 1452 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
CDX1P47902 MEX3D-201ENST00000402693 2850 ntAPPRIS P2 TSL 1 (best) BASIC22.24■■□□□ 1.15
CDX1P47902 ANAPC11-203ENST00000392376 687 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
CDX1P47902 SIAH1-203ENST00000394725 2147 ntAPPRIS P3 TSL 1 (best) BASIC22.22■■□□□ 1.15
CDX1P47902 CISD3-204ENST00000613478 2074 ntAPPRIS P1 TSL 2 BASIC22.21■■□□□ 1.15
CDX1P47902 TUSC1-201ENST00000358022 2052 ntAPPRIS P1 BASIC22.21■■□□□ 1.15
CDX1P47902 PPP1CC-202ENST00000340766 1472 ntTSL 2 BASIC22.19■■□□□ 1.14
CDX1P47902 CTDNEP1-208ENST00000573600 1724 ntAPPRIS P1 TSL 5 BASIC22.18■■□□□ 1.14
CDX1P47902 AL360182.2-201ENST00000451656 470 ntTSL 3 BASIC22.18■■□□□ 1.14
CDX1P47902 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC22.18■■□□□ 1.14
CDX1P47902 FBXO2-201ENST00000354287 1560 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
CDX1P47902 FAM117A-201ENST00000240364 2365 ntAPPRIS P2 TSL 1 (best) BASIC22.17■■□□□ 1.14
CDX1P47902 NADK2-202ENST00000381937 2243 ntAPPRIS P1 TSL 2 BASIC22.17■■□□□ 1.14
CDX1P47902 PDXP-201ENST00000215904 2010 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
CDX1P47902 EBPL-203ENST00000378270 579 ntTSL 2 BASIC22.15■■□□□ 1.14
CDX1P47902 C7orf50-202ENST00000397098 2131 ntAPPRIS P2 TSL 1 (best) BASIC22.15■■□□□ 1.14
CDX1P47902 PPP1R1A-201ENST00000257905 1826 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
CDX1P47902 PI4KAP2-202ENST00000450651 2294 ntTSL 5 BASIC22.13■■□□□ 1.13
CDX1P47902 CBX4-202ENST00000448310 718 ntAPPRIS ALT2 TSL 3 BASIC22.13■■□□□ 1.13
CDX1P47902 EMID1-201ENST00000334018 2173 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
CDX1P47902 AGAP1-204ENST00000409457 2165 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
CDX1P47902 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
CDX1P47902 MAPK13-201ENST00000211287 2052 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
CDX1P47902 HOXD13-201ENST00000392539 2240 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
CDX1P47902 LINC01578-204ENST00000554894 556 ntTSL 3 BASIC22.1■■□□□ 1.13
CDX1P47902 LINC01578-207ENST00000556895 802 ntTSL 2 BASIC22.1■■□□□ 1.13
CDX1P47902 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC22.08■■□□□ 1.13
CDX1P47902 FAM220A-201ENST00000313324 2214 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
CDX1P47902 KHDRBS3-201ENST00000355849 1977 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
CDX1P47902 NRGN-202ENST00000412681 1106 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
CDX1P47902 TPI1-201ENST00000229270 1763 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
CDX1P47902 ZIC2-201ENST00000376335 2983 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
CDX1P47902 ZBTB7A-202ENST00000601588 2083 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
CDX1P47902 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC22.04■■□□□ 1.12
CDX1P47902 LZTS2-201ENST00000370220 5741 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
CDX1P47902 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC22.02■■□□□ 1.12
CDX1P47902 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC22.01■■□□□ 1.11
CDX1P47902 MVK-208ENST00000539696 608 ntTSL 5 BASIC22.01■■□□□ 1.11
CDX1P47902 GLT8D1-201ENST00000266014 1849 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
CDX1P47902 PKDCC-201ENST00000294964 2502 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
CDX1P47902 MATK-201ENST00000310132 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC21.99■■□□□ 1.11
CDX1P47902 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC21.99■■□□□ 1.11
CDX1P47902 PCYT2-205ENST00000570391 1857 ntTSL 2 BASIC21.98■■□□□ 1.11
CDX1P47902 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC21.96■■□□□ 1.11
CDX1P47902 RNF130-205ENST00000521389 2263 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
CDX1P47902 FAM89A-201ENST00000366654 1495 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
CDX1P47902 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC21.96■■□□□ 1.11
CDX1P47902 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC21.95■■□□□ 1.1
CDX1P47902 LTB4R2-204ENST00000533293 1515 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
CDX1P47902 GLTP-201ENST00000318348 2356 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
CDX1P47902 OLFM2-201ENST00000264833 2019 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
CDX1P47902 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC21.92■■□□□ 1.1
CDX1P47902 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
CDX1P47902 ARTN-202ENST00000372359 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC21.92■■□□□ 1.1
CDX1P47902 RRAGC-201ENST00000373001 2732 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
CDX1P47902 B4GALT7-201ENST00000029410 1747 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
CDX1P47902 SFRP5-201ENST00000266066 1836 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
CDX1P47902 MAPK1-202ENST00000398822 1487 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
CDX1P47902 ADRA2C-201ENST00000330055 2129 ntAPPRIS P1 BASIC21.88■■□□□ 1.09
CDX1P47902 SENP3-201ENST00000321337 2611 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
CDX1P47902 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC21.87■■□□□ 1.09
CDX1P47902 FOXA2-202ENST00000419308 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC21.86■■□□□ 1.09
CDX1P47902 RARRES2P7-201ENST00000567349 469 ntBASIC21.86■■□□□ 1.09
CDX1P47902 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC21.86■■□□□ 1.09
CDX1P47902 INAFM1-201ENST00000552360 1255 ntAPPRIS P1 BASIC21.85■■□□□ 1.09
CDX1P47902 CYP26C1-201ENST00000285949 1569 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
CDX1P47902 AC092647.5-201ENST00000426595 1732 ntAPPRIS P1 TSL 5 BASIC21.85■■□□□ 1.09
CDX1P47902 EXOC3L4-201ENST00000380069 2293 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
CDX1P47902 ABL1-201ENST00000318560 5766 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
CDX1P47902 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC21.83■■□□□ 1.08
CDX1P47902 SHF-206ENST00000560471 2499 ntTSL 5 BASIC21.82■■□□□ 1.08
CDX1P47902 GNB5-202ENST00000358784 1735 ntAPPRIS ALT1 TSL 1 (best) BASIC21.81■■□□□ 1.08
CDX1P47902 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC21.81■■□□□ 1.08
CDX1P47902 KLF16-203ENST00000592313 508 ntTSL 3 BASIC21.81■■□□□ 1.08
CDX1P47902 GIPC1-202ENST00000393028 1483 ntTSL 3 BASIC21.81■■□□□ 1.08
CDX1P47902 DPP6-204ENST00000406326 2012 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
CDX1P47902 AGAP1-202ENST00000336665 5427 ntAPPRIS P3 TSL 1 (best) BASIC21.77■■□□□ 1.08
CDX1P47902 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC21.77■■□□□ 1.08
CDX1P47902 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
CDX1P47902 PHF23-201ENST00000320316 2037 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
CDX1P47902 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC21.76■■□□□ 1.07
CDX1P47902 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
CDX1P47902 AC135731.1-201ENST00000569415 2548 ntBASIC21.75■■□□□ 1.07
CDX1P47902 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
CDX1P47902 TESK1-206ENST00000620767 2438 ntAPPRIS P1 TSL 5 BASIC21.75■■□□□ 1.07
CDX1P47902 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC21.74■■□□□ 1.07
CDX1P47902 LMNTD2-201ENST00000329451 2084 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
CDX1P47902 BIN1-204ENST00000348750 2074 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 11.6 ms