Protein–RNA interactions for Protein: O75127

PTCD1, Pentatricopeptide repeat-containing protein 1, mitochondrial, humanhuman

Known RBP Predictions only

Length 700 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD1O75127 DUSP15-202ENST00000339738 1454 ntAPPRIS P1 TSL 1 (best) BASIC36.42■■■■□ 3.42
PTCD1O75127 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC36.41■■■■□ 3.42
PTCD1O75127 AL162393.1-201ENST00000437852 946 ntBASIC36.38■■■■□ 3.41
PTCD1O75127 NRG1-221ENST00000614767 762 ntTSL 5 BASIC36.36■■■■□ 3.41
PTCD1O75127 CRIP2-201ENST00000329146 1857 ntAPPRIS P1 TSL 1 (best) BASIC36.35■■■■□ 3.41
PTCD1O75127 PABPN1-201ENST00000216727 2001 ntAPPRIS P2 TSL 1 (best) BASIC36.34■■■■□ 3.41
PTCD1O75127 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC36.34■■■■□ 3.41
PTCD1O75127 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC36.3■■■■□ 3.4
PTCD1O75127 GNB5-202ENST00000358784 1735 ntAPPRIS ALT1 TSL 1 (best) BASIC36.29■■■■□ 3.4
PTCD1O75127 GSC2-201ENST00000086933 1033 ntAPPRIS P1 TSL 5 BASIC36.28■■■■□ 3.4
PTCD1O75127 PPP2CB-201ENST00000221138 2006 ntAPPRIS P1 TSL 1 (best) BASIC36.28■■■■□ 3.4
PTCD1O75127 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC36.27■■■■□ 3.4
PTCD1O75127 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC36.27■■■■□ 3.4
PTCD1O75127 CTDNEP1-208ENST00000573600 1724 ntAPPRIS P1 TSL 5 BASIC36.27■■■■□ 3.4
PTCD1O75127 AGAP1-204ENST00000409457 2165 ntTSL 1 (best) BASIC36.25■■■■□ 3.39
PTCD1O75127 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC36.25■■■■□ 3.39
PTCD1O75127 B4GALT2-203ENST00000372324 2203 ntAPPRIS P1 TSL 1 (best) BASIC36.24■■■■□ 3.39
PTCD1O75127 TGIF1-202ENST00000343820 2076 ntAPPRIS P1 TSL 1 (best) BASIC36.24■■■■□ 3.39
PTCD1O75127 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC36.24■■■■□ 3.39
PTCD1O75127 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC36.23■■■■□ 3.39
PTCD1O75127 AP006261.1-201ENST00000584783 668 ntBASIC36.23■■■■□ 3.39
PTCD1O75127 ARTN-202ENST00000372359 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC36.23■■■■□ 3.39
PTCD1O75127 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC36.22■■■■□ 3.39
PTCD1O75127 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC36.22■■■■□ 3.39
PTCD1O75127 NFKBIA-209ENST00000557389 1537 ntTSL 2 BASIC36.18■■■■□ 3.38
PTCD1O75127 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC36.18■■■■□ 3.38
PTCD1O75127 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC36.17■■■■□ 3.38
PTCD1O75127 CYP26C1-201ENST00000285949 1569 ntAPPRIS P1 TSL 1 (best) BASIC36.17■■■■□ 3.38
PTCD1O75127 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC36.16■■■■□ 3.38
PTCD1O75127 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC36.16■■■■□ 3.38
PTCD1O75127 EBPL-202ENST00000378268 680 ntTSL 3 BASIC36.15■■■■□ 3.38
PTCD1O75127 HNRNPLP2-201ENST00000568980 1570 ntBASIC36.14■■■■□ 3.38
PTCD1O75127 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC36.13■■■■□ 3.37
PTCD1O75127 ACOT7-209ENST00000545482 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC36.13■■■■□ 3.37
PTCD1O75127 B4GALT7-201ENST00000029410 1747 ntAPPRIS P1 TSL 1 (best) BASIC36.11■■■■□ 3.37
PTCD1O75127 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC36.1■■■■□ 3.37
PTCD1O75127 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC36.1■■■■□ 3.37
PTCD1O75127 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC36.09■■■■□ 3.37
PTCD1O75127 SFRP5-201ENST00000266066 1836 ntAPPRIS P1 TSL 1 (best) BASIC36.08■■■■□ 3.37
PTCD1O75127 ADRA2C-201ENST00000330055 2129 ntAPPRIS P1 BASIC36.08■■■■□ 3.37
PTCD1O75127 AKR1E2-201ENST00000298375 1566 ntAPPRIS P1 TSL 1 (best) BASIC36.04■■■■□ 3.36
PTCD1O75127 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC36.04■■■■□ 3.36
PTCD1O75127 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC36.03■■■■□ 3.36
PTCD1O75127 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC36.03■■■■□ 3.36
PTCD1O75127 ANXA5-201ENST00000296511 1762 ntAPPRIS P1 TSL 1 (best) BASIC36.02■■■■□ 3.36
PTCD1O75127 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC36.01■■■■□ 3.36
PTCD1O75127 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC36.01■■■■□ 3.36
PTCD1O75127 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC36.01■■■■□ 3.36
PTCD1O75127 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC36■■■■□ 3.35
PTCD1O75127 KHSRP-213ENST00000619396 2226 ntAPPRIS ALT2 TSL 5 BASIC35.99■■■■□ 3.35
PTCD1O75127 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC35.95■■■■□ 3.35
PTCD1O75127 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC35.94■■■■□ 3.34
PTCD1O75127 MIR3665-201ENST00000578708 105 ntBASIC35.94■■■■□ 3.34
PTCD1O75127 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC35.92■■■■□ 3.34
PTCD1O75127 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC35.92■■■■□ 3.34
PTCD1O75127 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC35.92■■■■□ 3.34
PTCD1O75127 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC35.92■■■■□ 3.34
PTCD1O75127 CSNK1E-205ENST00000405675 2127 ntTSL 5 BASIC35.9■■■■□ 3.34
PTCD1O75127 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC35.9■■■■□ 3.34
PTCD1O75127 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC35.88■■■■□ 3.33
PTCD1O75127 DUX4L28-201ENST00000623687 678 ntBASIC35.88■■■■□ 3.33
PTCD1O75127 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC35.86■■■■□ 3.33
PTCD1O75127 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC35.86■■■■□ 3.33
PTCD1O75127 AC087741.3-201ENST00000624270 1347 ntBASIC35.85■■■■□ 3.33
PTCD1O75127 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC35.85■■■■□ 3.33
PTCD1O75127 MIR762-201ENST00000390236 83 ntBASIC35.85■■■■□ 3.33
PTCD1O75127 KIAA2013-203ENST00000616327 2170 ntAPPRIS P1 TSL 5 BASIC35.85■■■■□ 3.33
PTCD1O75127 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC35.84■■■■□ 3.33
PTCD1O75127 INO80B-WBP1-202ENST00000452361 2040 ntAPPRIS P5 TSL 2 BASIC35.83■■■■□ 3.33
PTCD1O75127 CHML-205ENST00000638160 705 ntTSL 3 BASIC35.83■■■■□ 3.33
PTCD1O75127 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC35.82■■■■□ 3.32
PTCD1O75127 MAPK3-201ENST00000263025 1861 ntAPPRIS P3 TSL 1 (best) BASIC35.8■■■■□ 3.32
PTCD1O75127 ABHD17AP4-201ENST00000411545 909 ntBASIC35.77■■■■□ 3.32
PTCD1O75127 MPST-201ENST00000341116 1504 ntAPPRIS P1 TSL 5 BASIC35.77■■■■□ 3.32
PTCD1O75127 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC35.76■■■■□ 3.31
PTCD1O75127 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC35.75■■■■□ 3.31
PTCD1O75127 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC35.74■■■■□ 3.31
PTCD1O75127 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC35.73■■■■□ 3.31
PTCD1O75127 AC005559.1-201ENST00000589661 871 ntBASIC35.73■■■■□ 3.31
PTCD1O75127 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC35.72■■■■□ 3.31
PTCD1O75127 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC35.72■■■■□ 3.31
PTCD1O75127 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC35.7■■■■□ 3.31
PTCD1O75127 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC35.7■■■■□ 3.31
PTCD1O75127 MIR7108-201ENST00000614319 87 ntBASIC35.7■■■■□ 3.31
PTCD1O75127 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC35.69■■■■□ 3.3
PTCD1O75127 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC35.68■■■■□ 3.3
PTCD1O75127 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC35.65■■■■□ 3.3
PTCD1O75127 FOXD1-202ENST00000615637 2272 ntAPPRIS P1 BASIC35.65■■■■□ 3.3
PTCD1O75127 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC35.64■■■■□ 3.3
PTCD1O75127 AC044849.2-201ENST00000606596 710 ntBASIC35.64■■■■□ 3.3
PTCD1O75127 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC35.6■■■■□ 3.29
PTCD1O75127 MLEC-202ENST00000412616 841 ntTSL 3 BASIC35.6■■■■□ 3.29
PTCD1O75127 DENR-202ENST00000455982 1052 ntTSL 5 BASIC35.59■■■■□ 3.29
PTCD1O75127 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC35.59■■■■□ 3.29
PTCD1O75127 PVT1-219ENST00000523427 938 ntTSL 3 BASIC35.58■■■■□ 3.29
PTCD1O75127 TRAPPC10-202ENST00000380221 1763 ntTSL 1 (best) BASIC35.56■■■■□ 3.28
PTCD1O75127 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC35.56■■■■□ 3.28
PTCD1O75127 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC35.56■■■■□ 3.28
PTCD1O75127 WASH5P-204ENST00000632292 975 ntBASIC35.54■■■■□ 3.28
PTCD1O75127 JUND-201ENST00000252818 1863 ntAPPRIS P1 BASIC35.52■■■■□ 3.28
Retrieved 100 of 98,524 protein–RNA pairs in 16 ms