Protein–RNA interactions for Protein: Q96AA3

RFT1, Protein RFT1 homolog, humanhuman

Predictions only

Length 541 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFT1Q96AA3 MKL1-211ENST00000618196 4248 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
RFT1Q96AA3 ASB3-204ENST00000406687 2205 ntTSL 2 BASIC12.6□□□□□ -0.39
RFT1Q96AA3 ADRA2B-201ENST00000620793 3371 ntAPPRIS P1 BASIC12.6□□□□□ -0.39
RFT1Q96AA3 ARMC7-201ENST00000245543 2126 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
RFT1Q96AA3 CCDC18-203ENST00000401026 4552 ntAPPRIS ALT2 TSL 1 (best) BASIC12.59□□□□□ -0.39
RFT1Q96AA3 NUP133-201ENST00000261396 5207 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
RFT1Q96AA3 HNRNPUL1-207ENST00000595018 2794 ntTSL 2 BASIC12.59□□□□□ -0.39
RFT1Q96AA3 PAAF1-201ENST00000310571 4994 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
RFT1Q96AA3 SMPDL3B-202ENST00000373894 1878 ntAPPRIS P4 TSL 1 (best) BASIC12.59□□□□□ -0.39
RFT1Q96AA3 RHOH-218ENST00000613272 1865 ntAPPRIS P1 TSL 3 BASIC12.59□□□□□ -0.39
RFT1Q96AA3 FAM118B-210ENST00000627851 1862 ntTSL 5 BASIC12.59□□□□□ -0.39
RFT1Q96AA3 PTCHD3-201ENST00000438700 2529 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
RFT1Q96AA3 TBC1D2-204ENST00000375066 3198 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
RFT1Q96AA3 CCDC13-201ENST00000310232 2943 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
RFT1Q96AA3 CRY2-212ENST00000616623 4204 ntAPPRIS P2 TSL 1 (best) BASIC12.59□□□□□ -0.39
RFT1Q96AA3 OR2V1-204ENST00000641551 2423 ntAPPRIS P1 BASIC12.59□□□□□ -0.39
RFT1Q96AA3 ZNF792-201ENST00000404801 3888 ntAPPRIS P1 TSL 2 BASIC12.59□□□□□ -0.39
RFT1Q96AA3 DNAJA4-203ENST00000394855 3245 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
RFT1Q96AA3 ADCY7-201ENST00000254235 6138 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
RFT1Q96AA3 PPP2R1B-203ENST00000393055 1525 ntTSL 2 BASIC12.59□□□□□ -0.39
RFT1Q96AA3 DSN1-201ENST00000373734 1915 ntTSL 2 BASIC12.59□□□□□ -0.39
RFT1Q96AA3 TNS1-205ENST00000419504 5921 ntAPPRIS ALT2 TSL 1 (best) BASIC12.59□□□□□ -0.39
RFT1Q96AA3 TNS1-207ENST00000430930 5900 ntAPPRIS ALT2 TSL 1 (best) BASIC12.59□□□□□ -0.39
RFT1Q96AA3 COG5-201ENST00000297135 4060 ntAPPRIS P4 TSL 1 (best) BASIC12.59□□□□□ -0.39
RFT1Q96AA3 PLPPR1-201ENST00000374874 2495 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
RFT1Q96AA3 DHX38-201ENST00000268482 4608 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
RFT1Q96AA3 UEVLD-201ENST00000300038 995 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
RFT1Q96AA3 FAM169B-201ENST00000332908 579 ntAPPRIS P1 TSL 5 BASIC12.59□□□□□ -0.39
RFT1Q96AA3 LCE3E-201ENST00000368789 611 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
RFT1Q96AA3 KRTAP10-1-201ENST00000400375 1215 ntAPPRIS P1 BASIC12.59□□□□□ -0.39
RFT1Q96AA3 AC068587.3-201ENST00000526613 355 ntBASIC12.59□□□□□ -0.39
RFT1Q96AA3 COX14-203ENST00000550487 739 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
RFT1Q96AA3 GCHFR-206ENST00000561160 572 ntTSL 3 BASIC12.59□□□□□ -0.39
RFT1Q96AA3 SPCS2P1-201ENST00000561636 679 ntBASIC12.59□□□□□ -0.39
RFT1Q96AA3 MIR5189-201ENST00000577370 114 ntBASIC12.59□□□□□ -0.39
RFT1Q96AA3 MIR4745-201ENST00000577608 62 ntBASIC12.59□□□□□ -0.39
RFT1Q96AA3 YIF1B-216ENST00000592694 1181 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
RFT1Q96AA3 AC010319.3-201ENST00000597028 470 ntBASIC12.59□□□□□ -0.39
RFT1Q96AA3 ECM1P1-201ENST00000604092 1279 ntBASIC12.59□□□□□ -0.39
RFT1Q96AA3 AL096865.1-201ENST00000606796 927 ntBASIC12.59□□□□□ -0.39
RFT1Q96AA3 SLC43A3-214ENST00000529554 2207 ntAPPRIS P3 TSL 2 BASIC12.59□□□□□ -0.39
RFT1Q96AA3 CXorf40A-212ENST00000514208 1840 ntAPPRIS ALT1 TSL 5 BASIC12.59□□□□□ -0.39
RFT1Q96AA3 PRKD1-201ENST00000331968 3726 ntAPPRIS P3 TSL 1 (best) BASIC12.59□□□□□ -0.39
RFT1Q96AA3 BCL2L12-211ENST00000614495 1402 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
RFT1Q96AA3 PDE12-201ENST00000311180 8773 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
RFT1Q96AA3 IFT172-203ENST00000416524 1982 ntTSL 2 BASIC12.59□□□□□ -0.39
RFT1Q96AA3 APOBEC3D-202ENST00000427494 1961 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
RFT1Q96AA3 CDK3-201ENST00000425876 1582 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
RFT1Q96AA3 CDK3-202ENST00000448471 1570 ntAPPRIS P1 TSL 5 BASIC12.59□□□□□ -0.39
RFT1Q96AA3 PIK3R5-220ENST00000623421 4318 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
RFT1Q96AA3 DYSF-202ENST00000394120 6543 ntAPPRIS ALT2 TSL 1 (best) BASIC12.59□□□□□ -0.39
RFT1Q96AA3 ITSN1-208ENST00000399349 5191 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
RFT1Q96AA3 FBXO15-201ENST00000419743 1708 ntAPPRIS P2 TSL 2 BASIC12.59□□□□□ -0.39
RFT1Q96AA3 ICAM2-201ENST00000412356 1334 ntAPPRIS P1 TSL 5 BASIC12.59□□□□□ -0.39
RFT1Q96AA3 WDR45-224ENST00000485908 1301 ntTSL 5 BASIC12.59□□□□□ -0.39
RFT1Q96AA3 AL772337.1-201ENST00000399186 2014 ntTSL 5 BASIC12.59□□□□□ -0.39
RFT1Q96AA3 AMIGO3-201ENST00000320431 2862 ntAPPRIS P1 BASIC12.59□□□□□ -0.39
RFT1Q96AA3 F10-203ENST00000409306 1450 ntTSL 3 BASIC12.59□□□□□ -0.39
RFT1Q96AA3 APBB3-205ENST00000412920 1455 ntAPPRIS ALT1 TSL 1 (best) BASIC12.59□□□□□ -0.39
RFT1Q96AA3 HGNC:18790-211ENST00000621129 1483 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
RFT1Q96AA3 KCNMA1-210ENST00000404771 4014 ntAPPRIS ALT2 TSL 5 BASIC12.59□□□□□ -0.39
RFT1Q96AA3 C10orf88-204ENST00000481909 2482 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
RFT1Q96AA3 GNPDA1-204ENST00000503794 2622 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.39
RFT1Q96AA3 POLG-202ENST00000442287 4487 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.39
RFT1Q96AA3 MANBAL-201ENST00000373605 1915 ntAPPRIS P1 TSL 2 BASIC12.58□□□□□ -0.39
RFT1Q96AA3 PCDHB19P-202ENST00000625133 2914 ntBASIC12.58□□□□□ -0.39
RFT1Q96AA3 WDFY2-203ENST00000612477 6932 ntTSL 2 BASIC12.58□□□□□ -0.39
RFT1Q96AA3 HSPA12A-205ENST00000635765 5841 ntAPPRIS ALT2 TSL 5 BASIC12.58□□□□□ -0.4
RFT1Q96AA3 RS1-201ENST00000379984 2810 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
RFT1Q96AA3 MYCBP-201ENST00000397572 2818 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
RFT1Q96AA3 HOXC4-202ENST00000430889 1666 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
RFT1Q96AA3 LRRFIP1-202ENST00000289175 3709 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
RFT1Q96AA3 AP2M1-207ENST00000439647 1950 ntAPPRIS ALT1 TSL 2 BASIC12.58□□□□□ -0.4
RFT1Q96AA3 NTN4-203ENST00000538383 1971 ntTSL 2 BASIC12.58□□□□□ -0.4
RFT1Q96AA3 PDE2A-218ENST00000540345 3027 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
RFT1Q96AA3 ELP6-201ENST00000296149 1401 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
RFT1Q96AA3 TPM3P8-201ENST00000330554 643 ntBASIC12.58□□□□□ -0.4
RFT1Q96AA3 ZNRD1-201ENST00000332435 864 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
RFT1Q96AA3 CYP1A1-203ENST00000395049 1594 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
RFT1Q96AA3 BLVRA-202ENST00000402924 1161 ntAPPRIS P1 TSL 2 BASIC12.58□□□□□ -0.4
RFT1Q96AA3 RPL28-203ENST00000428193 573 ntTSL 2 BASIC12.58□□□□□ -0.4
RFT1Q96AA3 RPL28-204ENST00000431533 590 ntTSL 2 BASIC12.58□□□□□ -0.4
RFT1Q96AA3 GNB3-202ENST00000435982 1110 ntAPPRIS ALT1 TSL 1 (best) BASIC12.58□□□□□ -0.4
RFT1Q96AA3 SIRPB2-203ENST00000444444 884 ntTSL 2 BASIC12.58□□□□□ -0.4
RFT1Q96AA3 TGFA-205ENST00000444975 985 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
RFT1Q96AA3 CCDC159-201ENST00000458408 1062 ntAPPRIS P1 TSL 5 BASIC12.58□□□□□ -0.4
RFT1Q96AA3 TMEM14B-204ENST00000461342 559 ntTSL 2 BASIC12.58□□□□□ -0.4
RFT1Q96AA3 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC12.58□□□□□ -0.4
RFT1Q96AA3 IL32-218ENST00000530890 774 ntAPPRIS ALT2 TSL 2 BASIC12.58□□□□□ -0.4
RFT1Q96AA3 LINC02298-201ENST00000546968 965 ntTSL 5 BASIC12.58□□□□□ -0.4
RFT1Q96AA3 RPL28-207ENST00000558815 616 ntTSL 2 BASIC12.58□□□□□ -0.4
RFT1Q96AA3 PIGH-209ENST00000559581 1049 ntTSL 4 BASIC12.58□□□□□ -0.4
RFT1Q96AA3 VAT1-205ENST00000587173 1174 ntTSL 2 BASIC12.58□□□□□ -0.4
RFT1Q96AA3 BAP1-211ENST00000615113 489 ntBASIC12.58□□□□□ -0.4
RFT1Q96AA3 LINC01726-201ENST00000624692 1253 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
RFT1Q96AA3 SLX4-201ENST00000294008 7307 ntAPPRIS P1 TSL 5 BASIC12.58□□□□□ -0.4
RFT1Q96AA3 CDK11A-201ENST00000356200 2653 ntTSL 5 BASIC12.58□□□□□ -0.4
RFT1Q96AA3 SMU1-201ENST00000397149 7122 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
RFT1Q96AA3 AL133387.2-201ENST00000422661 2222 ntTSL 2 BASIC12.58□□□□□ -0.4
RFT1Q96AA3 ENO2-214ENST00000545045 1911 ntTSL 5 BASIC12.58□□□□□ -0.4
Retrieved 100 of 98,524 protein–RNA pairs in 65.4 ms