RNA–Protein interactions for RNA: ENST00000430889.2

HOXC4-202, Transcript of homeobox C4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXC4, Length 1,666 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4-202ENST00000430889 NISCHQ9Y2I1 1504 aa30.53■■■□□ 2.48
HOXC4-202ENST00000430889 CCDC180Q9P1Z9 1646 aa26.39■■□□□ 1.81
HOXC4-202ENST00000430889 ZCCHC6Q5VYS8 1495 aaKnown RBP25.8■■□□□ 1.72
HOXC4-202ENST00000430889 DCAF1Q9Y4B6 1507 aa25.27■■□□□ 1.64
HOXC4-202ENST00000430889 SHROOM4Q9ULL8 1493 aa25.23■■□□□ 1.63
HOXC4-202ENST00000430889 DCAF8L2P0C7V8 631 aa24.81■■□□□ 1.56
HOXC4-202ENST00000430889 MYO15BQ96JP2 1530 aa24.74■■□□□ 1.55
HOXC4-202ENST00000430889 SUPT5HO00267 1087 aaKnown RBP24.5■■□□□ 1.51
HOXC4-202ENST00000430889 NACADO15069 1562 aa24.38■■□□□ 1.49
HOXC4-202ENST00000430889 ABCC9O60706 1549 aa24.36■■□□□ 1.49
HOXC4-202ENST00000430889 SCRIBQ14160 1630 aa24.32■■□□□ 1.48
HOXC4-202ENST00000430889 RB1CC1Q8TDY2 1594 aa24.02■■□□□ 1.44
HOXC4-202ENST00000430889 RSF1Q96T23 1441 aaPredicted RBP23.91■■□□□ 1.42
HOXC4-202ENST00000430889 CHIC1Q5VXU3 224 aa23.86■■□□□ 1.41
HOXC4-202ENST00000430889 UNC13AQ9UPW8 1703 aa23.73■■□□□ 1.39
HOXC4-202ENST00000430889 CECR2Q9BXF3 1484 aa23.71■■□□□ 1.39
HOXC4-202ENST00000430889 MROH2BQ7Z745 1585 aa23.64■■□□□ 1.37
HOXC4-202ENST00000430889 BAZ1AQ9NRL2 1556 aaPredicted RBP23.5■■□□□ 1.35
HOXC4-202ENST00000430889 WIZO95785 1651 aa23.49■■□□□ 1.35
HOXC4-202ENST00000430889 BICRAQ9NZM4 1560 aa23.41■■□□□ 1.34
HOXC4-202ENST00000430889 SMARCA4P51532 1647 aa23.38■■□□□ 1.33
HOXC4-202ENST00000430889 TOP2AP11388 1531 aaKnown RBP23.23■■□□□ 1.31
HOXC4-202ENST00000430889 EIF4G1Q04637 1599 aaKnown RBP23.21■■□□□ 1.31
HOXC4-202ENST00000430889 PEG3Q9GZU2 1588 aa23.09■■□□□ 1.29
HOXC4-202ENST00000430889 SMARCA2P51531 1590 aa23.06■■□□□ 1.28
HOXC4-202ENST00000430889 PABPN1Q86U42 306 aaKnown RBP eCLIP23.05■■□□□ 1.28
HOXC4-202ENST00000430889 AEBP2Q6ZN18 517 aaPredicted RBP23■■□□□ 1.27
HOXC4-202ENST00000430889 CCDC88BA6NC98 1476 aa22.99■■□□□ 1.27
HOXC4-202ENST00000430889 TRIM41Q8WV44 630 aa22.97■■□□□ 1.27
HOXC4-202ENST00000430889 LOC105371045A0A1W2PR82 267 aa22.94■■□□□ 1.26
HOXC4-202ENST00000430889 ATAD2BQ9ULI0 1458 aa22.81■■□□□ 1.24
HOXC4-202ENST00000430889 ABCC8Q09428 1581 aa22.71■■□□□ 1.23
HOXC4-202ENST00000430889 BAZ1BQ9UIG0 1483 aaKnown RBP22.67■■□□□ 1.22
HOXC4-202ENST00000430889 FAM9AQ8IZU1 332 aaPredicted RBP22.58■■□□□ 1.21
HOXC4-202ENST00000430889 HMGXB3Q12766 1538 aa22.55■■□□□ 1.2
HOXC4-202ENST00000430889 NCAPD3P42695 1498 aa22.51■■□□□ 1.19
HOXC4-202ENST00000430889 PCGF6Q9BYE7 350 aa22.44■■□□□ 1.18
HOXC4-202ENST00000430889 WRNQ14191 1432 aaPredicted RBP eCLIP22.43■■□□□ 1.18
HOXC4-202ENST00000430889 SYNJ1O43426 1573 aa22.41■■□□□ 1.18
HOXC4-202ENST00000430889 EEA1Q15075 1411 aa22.41■■□□□ 1.18
HOXC4-202ENST00000430889 SOGA1O94964 1423 aa22.38■■□□□ 1.17
HOXC4-202ENST00000430889 HRCP23327 699 aa22.33■■□□□ 1.16
HOXC4-202ENST00000430889 TRIM26Q12899 539 aaPredicted RBP22.3■■□□□ 1.16
HOXC4-202ENST00000430889 RUSC2Q8N2Y8 1516 aa22.3■■□□□ 1.16
HOXC4-202ENST00000430889 TOP2BQ02880 1626 aa22.25■■□□□ 1.15
HOXC4-202ENST00000430889 BIVM-ERCC5R4GMW8 1640 aa22.25■■□□□ 1.15
HOXC4-202ENST00000430889 EHMT2Q96KQ7 1210 aa22.22■■□□□ 1.15
HOXC4-202ENST00000430889 PRDM2Q13029 1718 aa22.19■■□□□ 1.14
HOXC4-202ENST00000430889 CSRNP3Q8WYN3 585 aa22.19■■□□□ 1.14
HOXC4-202ENST00000430889 TNIKQ9UKE5 1360 aa22.18■■□□□ 1.14
HOXC4-202ENST00000430889 CFTRP13569 1480 aa22.18■■□□□ 1.14
HOXC4-202ENST00000430889 KIF21BO75037 1637 aa22.17■■□□□ 1.14
HOXC4-202ENST00000430889 GOLGA3Q08378 1498 aa22.13■■□□□ 1.13
HOXC4-202ENST00000430889 CEP162Q5TB80 1403 aa22.11■■□□□ 1.13
HOXC4-202ENST00000430889 CC2D2AQ9P2K1 1620 aa22.11■■□□□ 1.13
HOXC4-202ENST00000430889 CEP164Q9UPV0 1460 aa22.08■■□□□ 1.12
HOXC4-202ENST00000430889 CUX1P39880 1505 aa22.06■■□□□ 1.12
HOXC4-202ENST00000430889 CADPSQ9ULU8 1353 aa21.94■■□□□ 1.1
HOXC4-202ENST00000430889 RAPGEF2Q9Y4G8 1499 aa21.9■■□□□ 1.1
HOXC4-202ENST00000430889 ERICH3Q5RHP9 1530 aa21.89■■□□□ 1.09
HOXC4-202ENST00000430889 UBTFP17480 764 aaKnown RBP21.88■■□□□ 1.09
HOXC4-202ENST00000430889 PRXQ9BXM0 1461 aa21.88■■□□□ 1.09
HOXC4-202ENST00000430889 CLIP1P30622 1438 aa21.79■■□□□ 1.08
HOXC4-202ENST00000430889 KIF27Q86VH2 1401 aa21.79■■□□□ 1.08
HOXC4-202ENST00000430889 PPARGC1BQ86YN6 1023 aaKnown RBP21.76■■□□□ 1.07
HOXC4-202ENST00000430889 FANCD2Q9BXW9 1451 aa21.71■■□□□ 1.07
HOXC4-202ENST00000430889 VPS8Q8N3P4 1428 aa21.71■■□□□ 1.07
HOXC4-202ENST00000430889 FGD5Q6ZNL6 1462 aa21.69■■□□□ 1.06
HOXC4-202ENST00000430889 ZEB1P37275 1124 aaPredicted RBP21.66■■□□□ 1.06
HOXC4-202ENST00000430889 DNMBPQ6XZF7 1577 aa21.66■■□□□ 1.06
HOXC4-202ENST00000430889 LAMC3Q9Y6N6 1575 aa21.65■■□□□ 1.06
HOXC4-202ENST00000430889 CUX2O14529 1486 aa21.62■■□□□ 1.05
HOXC4-202ENST00000430889 NESP48681 1621 aa21.62■■□□□ 1.05
HOXC4-202ENST00000430889 ARAP1Q96P48 1450 aa21.59■■□□□ 1.05
HOXC4-202ENST00000430889 IGF1RP08069 1367 aa21.58■■□□□ 1.05
HOXC4-202ENST00000430889 TOPBP1Q92547 1522 aa21.57■■□□□ 1.04
HOXC4-202ENST00000430889 ABCA10Q8WWZ4 1543 aa21.53■■□□□ 1.04
HOXC4-202ENST00000430889 POLA1P09884 1462 aaPredicted RBP21.52■■□□□ 1.03
HOXC4-202ENST00000430889 WDR97A6NE52 1622 aa21.5■■□□□ 1.03
HOXC4-202ENST00000430889 DNAJC5BQ9UF47 199 aa21.47■■□□□ 1.03
HOXC4-202ENST00000430889 URB2Q14146 1524 aaKnown RBP21.47■■□□□ 1.03
HOXC4-202ENST00000430889 ARHGAP35Q9NRY4 1499 aa21.46■■□□□ 1.03
HOXC4-202ENST00000430889 CARMIL1Q5VZK9 1371 aa21.45■■□□□ 1.02
HOXC4-202ENST00000430889 RAD54L2Q9Y4B4 1467 aa21.44■■□□□ 1.02
HOXC4-202ENST00000430889 TTBK1Q5TCY1 1321 aaPredicted RBP21.43■■□□□ 1.02
HOXC4-202ENST00000430889 KIF21AQ7Z4S6 1674 aa21.4■■□□□ 1.02
HOXC4-202ENST00000430889 CUL7Q14999 1698 aa21.39■■□□□ 1.02
HOXC4-202ENST00000430889 PDS5BQ9NTI5 1447 aa21.39■■□□□ 1.01
HOXC4-202ENST00000430889 ABCA5Q8WWZ7 1642 aa21.36■■□□□ 1.01
HOXC4-202ENST00000430889 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.34■■□□□ 1.01
HOXC4-202ENST00000430889 RANGAP1P46060 587 aaPredicted RBP21.34■■□□□ 1.01
HOXC4-202ENST00000430889 APLP2Q06481 763 aa21.3■■□□□ 1
HOXC4-202ENST00000430889 CTTNBP2Q8WZ74 1663 aa21.28■■□□□ 1
HOXC4-202ENST00000430889 MAP3K1Q13233 1512 aa21.26■□□□□ 0.99
HOXC4-202ENST00000430889 TARBP1Q13395 1621 aaKnown RBP21.26■□□□□ 0.99
HOXC4-202ENST00000430889 CCER1Q8TC90 406 aaPredicted RBP21.26■□□□□ 0.99
HOXC4-202ENST00000430889 KANK4Q5T7N3 995 aaPredicted RBP21.21■□□□□ 0.99
HOXC4-202ENST00000430889 EFCAB5A4FU69 1503 aa21.2■□□□□ 0.98
HOXC4-202ENST00000430889 TIAM1Q13009 1591 aa21.19■□□□□ 0.98
HOXC4-202ENST00000430889 RRBP1Q9P2E9 1410 aaKnown RBP21.19■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms