RNA–Protein interactions for RNA: ENST00000294008.3

SLX4-201, Transcript of SLX4 structure-specific endonuclease subunit, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SLX4, Length 7,307 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLX4-201ENST00000294008 DCAF8L2P0C7V8 631 aa21.6■■□□□ 1.05
SLX4-201ENST00000294008 EHMT2Q96KQ7 1210 aa20.39■□□□□ 0.85
SLX4-201ENST00000294008 PELP1Q8IZL8 1130 aaKnown RBP20.14■□□□□ 0.81
SLX4-201ENST00000294008 ERICH6Q7L0X2 663 aa19.79■□□□□ 0.76
SLX4-201ENST00000294008 SUPT5HO00267 1087 aaKnown RBP19.78■□□□□ 0.76
SLX4-201ENST00000294008 TTBK1Q5TCY1 1321 aaPredicted RBP19.63■□□□□ 0.73
SLX4-201ENST00000294008 APLP2Q06481 763 aa19.58■□□□□ 0.72
SLX4-201ENST00000294008 FAM9AQ8IZU1 332 aaPredicted RBP19.55■□□□□ 0.72
SLX4-201ENST00000294008 MYT1Q01538 1121 aa19.43■□□□□ 0.7
SLX4-201ENST00000294008 RANGAP1P46060 587 aaPredicted RBP19.38■□□□□ 0.69
SLX4-201ENST00000294008 ATP1B4Q9UN42 357 aaPredicted RBP19.33■□□□□ 0.68
SLX4-201ENST00000294008 CCER1Q8TC90 406 aaPredicted RBP19.3■□□□□ 0.68
SLX4-201ENST00000294008 SHROOM4Q9ULL8 1493 aa19.14■□□□□ 0.65
SLX4-201ENST00000294008 CHIC1Q5VXU3 224 aa19.01■□□□□ 0.63
SLX4-201ENST00000294008 MYT1LQ9UL68 1186 aa19.01■□□□□ 0.63
SLX4-201ENST00000294008 PCGF6Q9BYE7 350 aa18.94■□□□□ 0.62
SLX4-201ENST00000294008 DAXXQ9UER7 740 aaPredicted RBP18.82■□□□□ 0.6
SLX4-201ENST00000294008 NEFLP07196 543 aa18.81■□□□□ 0.6
SLX4-201ENST00000294008 POLR3GLQ9BT43 218 aa18.8■□□□□ 0.6
SLX4-201ENST00000294008 YTHDC1Q96MU7 727 aaKnown RBP18.8■□□□□ 0.6
SLX4-201ENST00000294008 CNGB1Q14028 1251 aaPredicted RBP18.76■□□□□ 0.59
SLX4-201ENST00000294008 SLC4A1APQ9BWU0 796 aaKnown RBP18.72■□□□□ 0.59
SLX4-201ENST00000294008 CENPBP07199 599 aaPredicted RBP18.68■□□□□ 0.58
SLX4-201ENST00000294008 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.46■□□□□ 0.55
SLX4-201ENST00000294008 HNRNPUL2Q1KMD3 747 aaKnown RBP18.46■□□□□ 0.55
SLX4-201ENST00000294008 BCL11AQ9H165 835 aa18.37■□□□□ 0.53
SLX4-201ENST00000294008 SLC24A1O60721 1099 aa18.35■□□□□ 0.53
SLX4-201ENST00000294008 CLSPNQ9HAW4 1339 aa18.35■□□□□ 0.53
SLX4-201ENST00000294008 UBTFP17480 764 aaKnown RBP18.33■□□□□ 0.53
SLX4-201ENST00000294008 ZNF316A6NFI3 1004 aaPredicted RBP18.3■□□□□ 0.52
SLX4-201ENST00000294008 ITGAEP38570 1179 aa18.25■□□□□ 0.51
SLX4-201ENST00000294008 PPARGC1BQ86YN6 1023 aaKnown RBP18.23■□□□□ 0.51
SLX4-201ENST00000294008 TRIM41Q8WV44 630 aa18.01■□□□□ 0.47
SLX4-201ENST00000294008 RTL5Q5HYW3 569 aaPredicted RBP18.01■□□□□ 0.47
SLX4-201ENST00000294008 ZBTB47Q9UFB7 747 aaPredicted RBP17.97■□□□□ 0.47
SLX4-201ENST00000294008 BCANQ96GW7 911 aa17.96■□□□□ 0.47
SLX4-201ENST00000294008 ZEB1P37275 1124 aaPredicted RBP17.93■□□□□ 0.46
SLX4-201ENST00000294008 PLPPR3Q6T4P5 718 aa17.86■□□□□ 0.45
SLX4-201ENST00000294008 CANXP27824 592 aaKnown RBP17.67■□□□□ 0.42
SLX4-201ENST00000294008 A0A0G2JS52 829 aa17.65■□□□□ 0.42
SLX4-201ENST00000294008 ZNF326Q5BKZ1 582 aaKnown RBP17.63■□□□□ 0.41
SLX4-201ENST00000294008 TRIM52Q96A61 297 aa17.57■□□□□ 0.4
SLX4-201ENST00000294008 TULP1O00294 542 aaPredicted RBP17.52■□□□□ 0.4
SLX4-201ENST00000294008 NEFMP07197 916 aa17.51■□□□□ 0.39
SLX4-201ENST00000294008 SCAF1Q9H7N4 1312 aaKnown RBP17.5■□□□□ 0.39
SLX4-201ENST00000294008 NISCHQ9Y2I1 1504 aa17.49■□□□□ 0.39
SLX4-201ENST00000294008 CDK11BP21127 795 aaKnown RBP17.46■□□□□ 0.39
SLX4-201ENST00000294008 NCBP3Q53F19 620 aaKnown RBP17.46■□□□□ 0.39
SLX4-201ENST00000294008 CDK11AQ9UQ88 783 aaPredicted RBP17.46■□□□□ 0.39
SLX4-201ENST00000294008 FAM50AQ14320 339 aaKnown RBP17.45■□□□□ 0.38
SLX4-201ENST00000294008 PLEKHG5O94827 1062 aa17.42■□□□□ 0.38
SLX4-201ENST00000294008 NEUROD1Q13562 356 aa17.42■□□□□ 0.38
SLX4-201ENST00000294008 FBLN2P98095 1184 aa17.38■□□□□ 0.37
SLX4-201ENST00000294008 EIF5BO60841 1220 aaKnown RBP17.37■□□□□ 0.37
SLX4-201ENST00000294008 NPM2Q86SE8 214 aaKnown RBP17.35■□□□□ 0.37
SLX4-201ENST00000294008 HSP90AA1P07900 732 aaKnown RBP17.33■□□□□ 0.36
SLX4-201ENST00000294008 ESF1Q9H501 851 aaKnown RBP17.32■□□□□ 0.36
SLX4-201ENST00000294008 ANP32BQ92688 251 aaKnown RBP17.28■□□□□ 0.36
SLX4-201ENST00000294008 ARXQ96QS3 562 aa17.27■□□□□ 0.35
SLX4-201ENST00000294008 ZBTB7CA1YPR0 619 aa17.24■□□□□ 0.35
SLX4-201ENST00000294008 STAG3Q9UJ98 1225 aa17.24■□□□□ 0.35
SLX4-201ENST00000294008 ARID3CA6NKF2 412 aa17.21■□□□□ 0.35
SLX4-201ENST00000294008 CHGAP10645 457 aaKnown RBP17.19■□□□□ 0.34
SLX4-201ENST00000294008 HRCP23327 699 aa17.14■□□□□ 0.33
SLX4-201ENST00000294008 SENP3Q9H4L4 574 aaPredicted RBP17.12■□□□□ 0.33
SLX4-201ENST00000294008 TRIM26Q12899 539 aaPredicted RBP17.08■□□□□ 0.32
SLX4-201ENST00000294008 ANP32CO43423 234 aa17.07■□□□□ 0.32
SLX4-201ENST00000294008 TAOK2Q9UL54 1235 aa17.05■□□□□ 0.32
SLX4-201ENST00000294008 ANP32AP39687 249 aaKnown RBP17.03■□□□□ 0.32
SLX4-201ENST00000294008 C14orf37Q86TY3 774 aa17.01■□□□□ 0.31
SLX4-201ENST00000294008 TPRNQ4KMQ1 711 aa17.01■□□□□ 0.31
SLX4-201ENST00000294008 ZNF777Q9ULD5 760 aaPredicted RBP17■□□□□ 0.31
SLX4-201ENST00000294008 DIEXFQ68CQ4 756 aaKnown RBP16.99■□□□□ 0.31
SLX4-201ENST00000294008 SALL2Q9Y467 1007 aaPredicted RBP16.99■□□□□ 0.31
SLX4-201ENST00000294008 HAP1P54257 671 aaPredicted RBP16.94■□□□□ 0.3
SLX4-201ENST00000294008 CLSTN1O94985 981 aa16.94■□□□□ 0.3
SLX4-201ENST00000294008 NPHP1O15259 732 aa16.92■□□□□ 0.3
SLX4-201ENST00000294008 UPF2Q9HAU5 1272 aaKnown RBP16.92■□□□□ 0.3
SLX4-201ENST00000294008 LOC105371045A0A1W2PR82 267 aa16.89■□□□□ 0.29
SLX4-201ENST00000294008 PRM3Q9NNZ6 103 aa16.87■□□□□ 0.29
SLX4-201ENST00000294008 GLIPR1L2Q4G1C9 344 aa16.82■□□□□ 0.28
SLX4-201ENST00000294008 P3H3Q8IVL6 736 aa16.8■□□□□ 0.28
SLX4-201ENST00000294008 NBR1Q14596 966 aa16.78■□□□□ 0.28
SLX4-201ENST00000294008 GTF3C3Q9Y5Q9 886 aa16.74■□□□□ 0.27
SLX4-201ENST00000294008 ZRSR1Q15695 479 aaKnown RBP16.71■□□□□ 0.26
SLX4-201ENST00000294008 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.7■□□□□ 0.26
SLX4-201ENST00000294008 MYH16Q9H6N6 1097 aa16.69■□□□□ 0.26
SLX4-201ENST00000294008 AMER1Q5JTC6 1135 aaPredicted RBP16.69■□□□□ 0.26
SLX4-201ENST00000294008 NPM1P06748 294 aaKnown RBP eCLIP16.68■□□□□ 0.26
SLX4-201ENST00000294008 ISY1Q9ULR0 285 aaKnown RBP16.68■□□□□ 0.26
SLX4-201ENST00000294008 NCLP19338 710 aaKnown RBP16.67■□□□□ 0.26
SLX4-201ENST00000294008 FAM9BQ8IZU0 186 aa16.64■□□□□ 0.25
SLX4-201ENST00000294008 LMOD2Q6P5Q4 547 aa16.64■□□□□ 0.25
SLX4-201ENST00000294008 KRI1Q8N9T8 703 aaKnown RBP16.61■□□□□ 0.25
SLX4-201ENST00000294008 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.61■□□□□ 0.25
SLX4-201ENST00000294008 TRIM44Q96DX7 344 aaPredicted RBP16.59■□□□□ 0.25
SLX4-201ENST00000294008 DNTTIP2Q5QJE6 756 aaKnown RBP16.59■□□□□ 0.25
SLX4-201ENST00000294008 PTMAP06454 111 aaKnown RBP16.58■□□□□ 0.24
SLX4-201ENST00000294008 NAP1L2Q9ULW6 460 aaPredicted RBP16.58■□□□□ 0.24
SLX4-201ENST00000294008 PDE4CQ08493 712 aa16.57■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 52.2 ms