RNA–Protein interactions for RNA: ENST00000427494.6

APOBEC3D-202, Transcript of apolipoprotein B mRNA editing enzyme catalytic subunit 3D, humanhuman

TSL 1 (best) BASIC

Gene APOBEC3D, Length 1,961 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
APOBEC3D-202ENST00000427494 NISCHQ9Y2I1 1504 aa30.51■■■□□ 2.47
APOBEC3D-202ENST00000427494 CCDC180Q9P1Z9 1646 aa26.34■■□□□ 1.81
APOBEC3D-202ENST00000427494 ZCCHC6Q5VYS8 1495 aaKnown RBP25.73■■□□□ 1.71
APOBEC3D-202ENST00000427494 SHROOM4Q9ULL8 1493 aa25.4■■□□□ 1.66
APOBEC3D-202ENST00000427494 DCAF8L2P0C7V8 631 aa25.18■■□□□ 1.62
APOBEC3D-202ENST00000427494 DCAF1Q9Y4B6 1507 aa25.14■■□□□ 1.62
APOBEC3D-202ENST00000427494 SUPT5HO00267 1087 aaKnown RBP24.65■■□□□ 1.54
APOBEC3D-202ENST00000427494 MYO15BQ96JP2 1530 aa24.63■■□□□ 1.53
APOBEC3D-202ENST00000427494 ABCC9O60706 1549 aa24.59■■□□□ 1.53
APOBEC3D-202ENST00000427494 SCRIBQ14160 1630 aa24.42■■□□□ 1.5
APOBEC3D-202ENST00000427494 NACADO15069 1562 aa24.41■■□□□ 1.5
APOBEC3D-202ENST00000427494 AEBP2Q6ZN18 517 aaPredicted RBP24.16■■□□□ 1.46
APOBEC3D-202ENST00000427494 RB1CC1Q8TDY2 1594 aa24.11■■□□□ 1.45
APOBEC3D-202ENST00000427494 RSF1Q96T23 1441 aaPredicted RBP23.87■■□□□ 1.41
APOBEC3D-202ENST00000427494 CHIC1Q5VXU3 224 aa23.79■■□□□ 1.4
APOBEC3D-202ENST00000427494 UNC13AQ9UPW8 1703 aa23.73■■□□□ 1.39
APOBEC3D-202ENST00000427494 CECR2Q9BXF3 1484 aa23.72■■□□□ 1.39
APOBEC3D-202ENST00000427494 MROH2BQ7Z745 1585 aa23.64■■□□□ 1.37
APOBEC3D-202ENST00000427494 BAZ1AQ9NRL2 1556 aaPredicted RBP23.51■■□□□ 1.35
APOBEC3D-202ENST00000427494 WIZO95785 1651 aa23.5■■□□□ 1.35
APOBEC3D-202ENST00000427494 BICRAQ9NZM4 1560 aa23.41■■□□□ 1.34
APOBEC3D-202ENST00000427494 SMARCA4P51532 1647 aa23.38■■□□□ 1.33
APOBEC3D-202ENST00000427494 PABPN1Q86U42 306 aaKnown RBP eCLIP23.31■■□□□ 1.32
APOBEC3D-202ENST00000427494 TOP2AP11388 1531 aaKnown RBP23.2■■□□□ 1.31
APOBEC3D-202ENST00000427494 TRIM41Q8WV44 630 aa23.08■■□□□ 1.29
APOBEC3D-202ENST00000427494 EIF4G1Q04637 1599 aaKnown RBP23.03■■□□□ 1.28
APOBEC3D-202ENST00000427494 SMARCA2P51531 1590 aa23.02■■□□□ 1.28
APOBEC3D-202ENST00000427494 CCDC88BA6NC98 1476 aa23■■□□□ 1.27
APOBEC3D-202ENST00000427494 PEG3Q9GZU2 1588 aa22.99■■□□□ 1.27
APOBEC3D-202ENST00000427494 LOC105371045A0A1W2PR82 267 aa22.96■■□□□ 1.27
APOBEC3D-202ENST00000427494 ATAD2BQ9ULI0 1458 aa22.84■■□□□ 1.25
APOBEC3D-202ENST00000427494 FAM9AQ8IZU1 332 aaPredicted RBP22.77■■□□□ 1.24
APOBEC3D-202ENST00000427494 BAZ1BQ9UIG0 1483 aaKnown RBP22.77■■□□□ 1.24
APOBEC3D-202ENST00000427494 ABCC8Q09428 1581 aa22.74■■□□□ 1.23
APOBEC3D-202ENST00000427494 HMGXB3Q12766 1538 aa22.54■■□□□ 1.2
APOBEC3D-202ENST00000427494 NCAPD3P42695 1498 aa22.52■■□□□ 1.2
APOBEC3D-202ENST00000427494 EHMT2Q96KQ7 1210 aa22.51■■□□□ 1.19
APOBEC3D-202ENST00000427494 WRNQ14191 1432 aaPredicted RBP eCLIP22.46■■□□□ 1.19
APOBEC3D-202ENST00000427494 PCGF6Q9BYE7 350 aa22.45■■□□□ 1.18
APOBEC3D-202ENST00000427494 SYNJ1O43426 1573 aa22.39■■□□□ 1.17
APOBEC3D-202ENST00000427494 SOGA1O94964 1423 aa22.39■■□□□ 1.17
APOBEC3D-202ENST00000427494 EEA1Q15075 1411 aa22.34■■□□□ 1.17
APOBEC3D-202ENST00000427494 RUSC2Q8N2Y8 1516 aa22.29■■□□□ 1.16
APOBEC3D-202ENST00000427494 TRIM26Q12899 539 aaPredicted RBP22.25■■□□□ 1.15
APOBEC3D-202ENST00000427494 CSRNP3Q8WYN3 585 aa22.23■■□□□ 1.15
APOBEC3D-202ENST00000427494 CC2D2AQ9P2K1 1620 aa22.23■■□□□ 1.15
APOBEC3D-202ENST00000427494 TOP2BQ02880 1626 aa22.22■■□□□ 1.15
APOBEC3D-202ENST00000427494 BIVM-ERCC5R4GMW8 1640 aa22.19■■□□□ 1.14
APOBEC3D-202ENST00000427494 CFTRP13569 1480 aa22.18■■□□□ 1.14
APOBEC3D-202ENST00000427494 HRCP23327 699 aa22.16■■□□□ 1.14
APOBEC3D-202ENST00000427494 PRDM2Q13029 1718 aa22.15■■□□□ 1.14
APOBEC3D-202ENST00000427494 GOLGA3Q08378 1498 aa22.12■■□□□ 1.13
APOBEC3D-202ENST00000427494 TNIKQ9UKE5 1360 aa22.12■■□□□ 1.13
APOBEC3D-202ENST00000427494 CEP162Q5TB80 1403 aa22.09■■□□□ 1.13
APOBEC3D-202ENST00000427494 KIF21BO75037 1637 aa22.08■■□□□ 1.13
APOBEC3D-202ENST00000427494 CUX1P39880 1505 aa22.06■■□□□ 1.12
APOBEC3D-202ENST00000427494 CEP164Q9UPV0 1460 aa22.06■■□□□ 1.12
APOBEC3D-202ENST00000427494 UBTFP17480 764 aaKnown RBP22.05■■□□□ 1.12
APOBEC3D-202ENST00000427494 CADPSQ9ULU8 1353 aa22.01■■□□□ 1.11
APOBEC3D-202ENST00000427494 PPARGC1BQ86YN6 1023 aaKnown RBP21.92■■□□□ 1.1
APOBEC3D-202ENST00000427494 RAPGEF2Q9Y4G8 1499 aa21.9■■□□□ 1.1
APOBEC3D-202ENST00000427494 KIF27Q86VH2 1401 aa21.84■■□□□ 1.09
APOBEC3D-202ENST00000427494 ERICH3Q5RHP9 1530 aa21.82■■□□□ 1.08
APOBEC3D-202ENST00000427494 FANCD2Q9BXW9 1451 aa21.8■■□□□ 1.08
APOBEC3D-202ENST00000427494 CLIP1P30622 1438 aa21.8■■□□□ 1.08
APOBEC3D-202ENST00000427494 PRXQ9BXM0 1461 aa21.8■■□□□ 1.08
APOBEC3D-202ENST00000427494 FGD5Q6ZNL6 1462 aa21.75■■□□□ 1.07
APOBEC3D-202ENST00000427494 NESP48681 1621 aa21.75■■□□□ 1.07
APOBEC3D-202ENST00000427494 CUX2O14529 1486 aa21.71■■□□□ 1.07
APOBEC3D-202ENST00000427494 LAMC3Q9Y6N6 1575 aa21.7■■□□□ 1.06
APOBEC3D-202ENST00000427494 DNMBPQ6XZF7 1577 aa21.69■■□□□ 1.06
APOBEC3D-202ENST00000427494 TTBK1Q5TCY1 1321 aaPredicted RBP21.67■■□□□ 1.06
APOBEC3D-202ENST00000427494 VPS8Q8N3P4 1428 aa21.66■■□□□ 1.06
APOBEC3D-202ENST00000427494 RANGAP1P46060 587 aaPredicted RBP21.65■■□□□ 1.06
APOBEC3D-202ENST00000427494 TOPBP1Q92547 1522 aa21.62■■□□□ 1.05
APOBEC3D-202ENST00000427494 IGF1RP08069 1367 aa21.59■■□□□ 1.05
APOBEC3D-202ENST00000427494 ZEB1P37275 1124 aaPredicted RBP21.58■■□□□ 1.05
APOBEC3D-202ENST00000427494 DNAJC5BQ9UF47 199 aa21.57■■□□□ 1.04
APOBEC3D-202ENST00000427494 POLA1P09884 1462 aaPredicted RBP21.56■■□□□ 1.04
APOBEC3D-202ENST00000427494 ARAP1Q96P48 1450 aa21.53■■□□□ 1.04
APOBEC3D-202ENST00000427494 RAD54L2Q9Y4B4 1467 aa21.53■■□□□ 1.04
APOBEC3D-202ENST00000427494 ABCA10Q8WWZ4 1543 aa21.52■■□□□ 1.04
APOBEC3D-202ENST00000427494 PDS5BQ9NTI5 1447 aa21.52■■□□□ 1.03
APOBEC3D-202ENST00000427494 URB2Q14146 1524 aaKnown RBP21.51■■□□□ 1.03
APOBEC3D-202ENST00000427494 CARMIL1Q5VZK9 1371 aa21.51■■□□□ 1.03
APOBEC3D-202ENST00000427494 KIF21AQ7Z4S6 1674 aa21.49■■□□□ 1.03
APOBEC3D-202ENST00000427494 APLP2Q06481 763 aa21.48■■□□□ 1.03
APOBEC3D-202ENST00000427494 WDR97A6NE52 1622 aa21.45■■□□□ 1.02
APOBEC3D-202ENST00000427494 ARHGAP35Q9NRY4 1499 aa21.42■■□□□ 1.02
APOBEC3D-202ENST00000427494 CUL7Q14999 1698 aa21.39■■□□□ 1.01
APOBEC3D-202ENST00000427494 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.37■■□□□ 1.01
APOBEC3D-202ENST00000427494 CCER1Q8TC90 406 aaPredicted RBP21.34■■□□□ 1.01
APOBEC3D-202ENST00000427494 ABCA5Q8WWZ7 1642 aa21.33■■□□□ 1.01
APOBEC3D-202ENST00000427494 TDRD9Q8NDG6 1382 aaKnown RBP21.27■■□□□ 1
APOBEC3D-202ENST00000427494 CTTNBP2Q8WZ74 1663 aa21.27■■□□□ 1
APOBEC3D-202ENST00000427494 GAPVD1Q14C86 1478 aa21.27■■□□□ 1
APOBEC3D-202ENST00000427494 TARBP1Q13395 1621 aaKnown RBP21.26■□□□□ 0.99
APOBEC3D-202ENST00000427494 MRC2Q9UBG0 1479 aa21.24■□□□□ 0.99
APOBEC3D-202ENST00000427494 KANK4Q5T7N3 995 aaPredicted RBP21.23■□□□□ 0.99
APOBEC3D-202ENST00000427494 HNRNPUL2Q1KMD3 747 aaKnown RBP21.21■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms