RNA–Protein interactions for RNA: ENST00000448471.2

CDK3-202, Transcript of cyclin dependent kinase 3, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CDK3, Length 1,570 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDK3-202ENST00000448471 NISCHQ9Y2I1 1504 aa35.19■■■■□ 3.22
CDK3-202ENST00000448471 ABCC9O60706 1549 aa32.11■■■□□ 2.73
CDK3-202ENST00000448471 CCDC180Q9P1Z9 1646 aa31.72■■■□□ 2.67
CDK3-202ENST00000448471 DNAJC5BQ9UF47 199 aa30.44■■■□□ 2.46
CDK3-202ENST00000448471 RB1CC1Q8TDY2 1594 aa30.39■■■□□ 2.46
CDK3-202ENST00000448471 NACADO15069 1562 aa30.09■■■□□ 2.41
CDK3-202ENST00000448471 DCAF8L2P0C7V8 631 aa29.86■■■□□ 2.37
CDK3-202ENST00000448471 PABPN1Q86U42 306 aaKnown RBP eCLIP29.83■■■□□ 2.37
CDK3-202ENST00000448471 UNC13AQ9UPW8 1703 aa29.66■■■□□ 2.34
CDK3-202ENST00000448471 MYO15BQ96JP2 1530 aa29.55■■■□□ 2.32
CDK3-202ENST00000448471 BICRAQ9NZM4 1560 aa29.52■■■□□ 2.32
CDK3-202ENST00000448471 ZCCHC6Q5VYS8 1495 aaKnown RBP29.1■■■□□ 2.25
CDK3-202ENST00000448471 SHROOM4Q9ULL8 1493 aa29.09■■■□□ 2.25
CDK3-202ENST00000448471 DCAF1Q9Y4B6 1507 aa29.04■■■□□ 2.24
CDK3-202ENST00000448471 CC2D2AQ9P2K1 1620 aa28.98■■■□□ 2.23
CDK3-202ENST00000448471 CECR2Q9BXF3 1484 aa28.96■■■□□ 2.23
CDK3-202ENST00000448471 SCRIBQ14160 1630 aa28.91■■■□□ 2.22
CDK3-202ENST00000448471 EIF4G1Q04637 1599 aaKnown RBP28.83■■■□□ 2.21
CDK3-202ENST00000448471 DNAJC5Q9H3Z4 198 aa28.21■■■□□ 2.11
CDK3-202ENST00000448471 CUX2O14529 1486 aa27.82■■■□□ 2.04
CDK3-202ENST00000448471 NCAPD3P42695 1498 aa27.79■■■□□ 2.04
CDK3-202ENST00000448471 ERCC6Q03468 1493 aa27.75■■■□□ 2.03
CDK3-202ENST00000448471 ATAD2BQ9ULI0 1458 aa27.65■■■□□ 2.02
CDK3-202ENST00000448471 SMARCA2P51531 1590 aa27.55■■■□□ 2
CDK3-202ENST00000448471 HMGXB3Q12766 1538 aa27.55■■■□□ 2
CDK3-202ENST00000448471 SMARCA4P51532 1647 aa27.53■■■□□ 2
CDK3-202ENST00000448471 NESP48681 1621 aa27.48■■□□□ 1.99
CDK3-202ENST00000448471 BAZ1BQ9UIG0 1483 aaKnown RBP27.37■■□□□ 1.97
CDK3-202ENST00000448471 BAZ1AQ9NRL2 1556 aaPredicted RBP27.34■■□□□ 1.97
CDK3-202ENST00000448471 THOC2Q8NI27 1593 aaKnown RBP27.27■■□□□ 1.96
CDK3-202ENST00000448471 PEG3Q9GZU2 1588 aa27.26■■□□□ 1.95
CDK3-202ENST00000448471 LAMC3Q9Y6N6 1575 aa27.22■■□□□ 1.95
CDK3-202ENST00000448471 MROH2BQ7Z745 1585 aa27.11■■□□□ 1.93
CDK3-202ENST00000448471 KIF21AQ7Z4S6 1674 aa27.09■■□□□ 1.93
CDK3-202ENST00000448471 PDS5BQ9NTI5 1447 aa27.07■■□□□ 1.92
CDK3-202ENST00000448471 CADPSQ9ULU8 1353 aa26.93■■□□□ 1.9
CDK3-202ENST00000448471 MRC2Q9UBG0 1479 aa26.87■■□□□ 1.89
CDK3-202ENST00000448471 TRIM41Q8WV44 630 aa26.84■■□□□ 1.89
CDK3-202ENST00000448471 WDR62O43379 1518 aa26.82■■□□□ 1.88
CDK3-202ENST00000448471 WIZO95785 1651 aa26.76■■□□□ 1.87
CDK3-202ENST00000448471 CEP164Q9UPV0 1460 aa26.7■■□□□ 1.86
CDK3-202ENST00000448471 FANCD2Q9BXW9 1451 aa26.63■■□□□ 1.85
CDK3-202ENST00000448471 CFTRP13569 1480 aa26.54■■□□□ 1.84
CDK3-202ENST00000448471 OSCARQ8IYS5 282 aa26.48■■□□□ 1.83
CDK3-202ENST00000448471 URB2Q14146 1524 aaKnown RBP26.43■■□□□ 1.82
CDK3-202ENST00000448471 RSF1Q96T23 1441 aaPredicted RBP26.42■■□□□ 1.82
CDK3-202ENST00000448471 TOP2AP11388 1531 aaKnown RBP26.41■■□□□ 1.82
CDK3-202ENST00000448471 PRDM2Q13029 1718 aa26.21■■□□□ 1.79
CDK3-202ENST00000448471 RIMBP3CA6NJZ7 1639 aa26.19■■□□□ 1.78
CDK3-202ENST00000448471 RIMBP3BA6NNM3 1639 aa26.19■■□□□ 1.78
CDK3-202ENST00000448471 RIMBP3Q9UFD9 1639 aa26.19■■□□□ 1.78
CDK3-202ENST00000448471 ZNF608Q9ULD9 1512 aaPredicted RBP26.17■■□□□ 1.78
CDK3-202ENST00000448471 IFT140Q96RY7 1462 aa26.17■■□□□ 1.78
CDK3-202ENST00000448471 CCDC88BA6NC98 1476 aa26.11■■□□□ 1.77
CDK3-202ENST00000448471 TOPBP1Q92547 1522 aa26.08■■□□□ 1.77
CDK3-202ENST00000448471 ARHGEF11O15085 1522 aa26.07■■□□□ 1.76
CDK3-202ENST00000448471 EIF4G3O43432 1585 aaKnown RBP26.01■■□□□ 1.75
CDK3-202ENST00000448471 ABCC8Q09428 1581 aa25.98■■□□□ 1.75
CDK3-202ENST00000448471 DNMBPQ6XZF7 1577 aa25.95■■□□□ 1.74
CDK3-202ENST00000448471 CYB5RLQ6IPT4 315 aa25.9■■□□□ 1.74
CDK3-202ENST00000448471 AQRO60306 1485 aaKnown RBP eCLIP25.88■■□□□ 1.735e-8■■■□□ 17.4
CDK3-202ENST00000448471 TARBP1Q13395 1621 aaKnown RBP25.86■■□□□ 1.73
CDK3-202ENST00000448471 CHD1O14646 1710 aa25.86■■□□□ 1.73
CDK3-202ENST00000448471 POLA1P09884 1462 aaPredicted RBP25.8■■□□□ 1.72
CDK3-202ENST00000448471 ARAP1Q96P48 1450 aa25.79■■□□□ 1.72
CDK3-202ENST00000448471 FBLN2P98095 1184 aa25.79■■□□□ 1.72
CDK3-202ENST00000448471 TRHP20396 242 aaPredicted RBP25.73■■□□□ 1.71
CDK3-202ENST00000448471 RAD54L2Q9Y4B4 1467 aa25.71■■□□□ 1.71
CDK3-202ENST00000448471 TDRD9Q8NDG6 1382 aaKnown RBP25.66■■□□□ 1.7
CDK3-202ENST00000448471 SOGA1O94964 1423 aa25.66■■□□□ 1.7
CDK3-202ENST00000448471 SNAPC4Q5SXM2 1469 aa25.62■■□□□ 1.69
CDK3-202ENST00000448471 FGD5Q6ZNL6 1462 aa25.58■■□□□ 1.69
CDK3-202ENST00000448471 WDR97A6NE52 1622 aa25.58■■□□□ 1.69
CDK3-202ENST00000448471 CLASP1Q7Z460 1538 aa25.58■■□□□ 1.68
CDK3-202ENST00000448471 CHMP7Q8WUX9 453 aaPredicted RBP25.53■■□□□ 1.68
CDK3-202ENST00000448471 SYNJ1O43426 1573 aa25.53■■□□□ 1.68
CDK3-202ENST00000448471 MAGI1Q96QZ7 1491 aaPredicted RBP25.52■■□□□ 1.68
CDK3-202ENST00000448471 SUPT5HO00267 1087 aaKnown RBP25.52■■□□□ 1.68
CDK3-202ENST00000448471 CUX1P39880 1505 aa25.5■■□□□ 1.67
CDK3-202ENST00000448471 GRIN2BQ13224 1484 aa25.49■■□□□ 1.67
CDK3-202ENST00000448471 SYNJ2O15056 1496 aa25.45■■□□□ 1.66
CDK3-202ENST00000448471 GAPVD1Q14C86 1478 aa25.35■■□□□ 1.65
CDK3-202ENST00000448471 PBRM1Q86U86 1689 aa25.34■■□□□ 1.65
CDK3-202ENST00000448471 ABCA5Q8WWZ7 1642 aa25.26■■□□□ 1.63
CDK3-202ENST00000448471 ABCA10Q8WWZ4 1543 aa25.26■■□□□ 1.63
CDK3-202ENST00000448471 AEBP2Q6ZN18 517 aaPredicted RBP25.26■■□□□ 1.63
CDK3-202ENST00000448471 GRIN2AQ12879 1464 aa25.16■■□□□ 1.62
CDK3-202ENST00000448471 ERCC6L2Q5T890 1561 aa25.16■■□□□ 1.62
CDK3-202ENST00000448471 ADAMTS12P58397 1594 aa25.1■■□□□ 1.61
CDK3-202ENST00000448471 NUP160Q12769 1436 aa25.09■■□□□ 1.61
CDK3-202ENST00000448471 WRNQ14191 1432 aaPredicted RBP eCLIP25.09■■□□□ 1.61
CDK3-202ENST00000448471 CEP170Q5SW79 1584 aa25.09■■□□□ 1.61
CDK3-202ENST00000448471 FHAD1B1AJZ9 1412 aa25.01■■□□□ 1.59
CDK3-202ENST00000448471 SHROOM2Q13796 1616 aa25.01■■□□□ 1.59
CDK3-202ENST00000448471 TOP2BQ02880 1626 aa24.98■■□□□ 1.59
CDK3-202ENST00000448471 BIVM-ERCC5R4GMW8 1640 aa24.98■■□□□ 1.59
CDK3-202ENST00000448471 ERICH3Q5RHP9 1530 aa24.93■■□□□ 1.58
CDK3-202ENST00000448471 PRG4Q92954 1404 aaPredicted RBP24.88■■□□□ 1.57
CDK3-202ENST00000448471 KIF13AQ9H1H9 1805 aa24.85■■□□□ 1.57
CDK3-202ENST00000448471 JPH4Q96JJ6 628 aa24.82■■□□□ 1.56
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms