Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 NUMBL-201ENST00000252891 3561 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
COL4A5P29400 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
COL4A5P29400 MYL3-201ENST00000292327 924 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
COL4A5P29400 ZMAT5-201ENST00000344318 899 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
COL4A5P29400 KLK8-203ENST00000347619 555 ntTSL 2 BASIC16.32■□□□□ 0.2
COL4A5P29400 CA6-201ENST00000377436 942 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
COL4A5P29400 CA6-202ENST00000377442 747 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
COL4A5P29400 BTF3-202ENST00000380591 1237 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
COL4A5P29400 RNF7-205ENST00000480908 782 ntTSL 4 BASIC16.32■□□□□ 0.2
COL4A5P29400 RN7SL47P-201ENST00000488710 299 ntBASIC16.32■□□□□ 0.2
COL4A5P29400 RN7SL638P-201ENST00000494527 290 ntBASIC16.32■□□□□ 0.2
COL4A5P29400 AC090200.1-201ENST00000522918 590 ntTSL 2 BASIC16.32■□□□□ 0.2
COL4A5P29400 DSCAS-201ENST00000581836 553 ntTSL 4 BASIC16.32■□□□□ 0.2
COL4A5P29400 TLE2-205ENST00000586422 389 ntTSL 5 BASIC16.32■□□□□ 0.2
COL4A5P29400 CDIPT-AS1-203ENST00000638164 713 ntBASIC16.32■□□□□ 0.2
COL4A5P29400 LILRB2-202ENST00000391746 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
COL4A5P29400 TMTC1-206ENST00000551659 4228 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
COL4A5P29400 DIRC2-201ENST00000261038 3596 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
COL4A5P29400 LAIR1-201ENST00000348231 1467 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
COL4A5P29400 NPHP4-211ENST00000622020 3004 ntTSL 5 BASIC16.32■□□□□ 0.2
COL4A5P29400 DDX46-212ENST00000628477 1584 ntTSL 5 BASIC16.32■□□□□ 0.2
COL4A5P29400 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
COL4A5P29400 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
COL4A5P29400 GDF9-201ENST00000296875 1796 ntTSL 5 BASIC16.32■□□□□ 0.2
COL4A5P29400 ATF4P4-201ENST00000393544 1930 ntBASIC16.31■□□□□ 0.2
COL4A5P29400 ELL-201ENST00000262809 4027 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
COL4A5P29400 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
COL4A5P29400 LEF1-202ENST00000379951 3477 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
COL4A5P29400 PDHX-201ENST00000227868 2389 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
COL4A5P29400 COA6-201ENST00000366612 1013 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
COL4A5P29400 UBIAD1-201ENST00000376804 825 ntTSL 2 BASIC16.31■□□□□ 0.2
COL4A5P29400 IQCF4-203ENST00000428561 420 ntBASIC16.31■□□□□ 0.2
COL4A5P29400 LINC01824-201ENST00000436082 528 ntTSL 4 BASIC16.31■□□□□ 0.2
COL4A5P29400 ACTG1P23-201ENST00000437653 1074 ntBASIC16.31■□□□□ 0.2
COL4A5P29400 BICD1P1-201ENST00000457832 1222 ntBASIC16.31■□□□□ 0.2
COL4A5P29400 AL358215.1-201ENST00000481350 482 ntTSL 5 BASIC16.31■□□□□ 0.2
COL4A5P29400 MYCBP-203ENST00000494695 750 ntTSL 2 BASIC16.31■□□□□ 0.2
COL4A5P29400 CCDC42-202ENST00000539522 1087 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
COL4A5P29400 AL583722.3-201ENST00000553433 503 ntTSL 4 BASIC16.31■□□□□ 0.2
COL4A5P29400 LINC00677-201ENST00000558224 486 ntTSL 3 BASIC16.31■□□□□ 0.2
COL4A5P29400 AC120498.5-201ENST00000561757 299 ntBASIC16.31■□□□□ 0.2
COL4A5P29400 RPL26-209ENST00000584164 873 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
COL4A5P29400 MXRA7-204ENST00000585519 540 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
COL4A5P29400 BLVRB-202ENST00000595483 649 ntTSL 2 BASIC16.31■□□□□ 0.2
COL4A5P29400 AC022001.3-201ENST00000606330 596 ntBASIC16.31■□□□□ 0.2
COL4A5P29400 AL109954.3-201ENST00000615088 558 ntBASIC16.31■□□□□ 0.2
COL4A5P29400 FBXO46-201ENST00000317683 3001 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
COL4A5P29400 EPS8L2-231ENST00000614442 3188 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
COL4A5P29400 TRIML2-207ENST00000512729 1639 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
COL4A5P29400 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
COL4A5P29400 GP6-201ENST00000310373 2268 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
COL4A5P29400 CEP78-203ENST00000376598 2404 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
COL4A5P29400 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
COL4A5P29400 GGACT-201ENST00000376250 2804 ntAPPRIS P1 TSL 3 BASIC16.31■□□□□ 0.2
COL4A5P29400 PPP1R21-201ENST00000281394 3137 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
COL4A5P29400 KCNC3-202ENST00000474951 3347 ntTSL 2 BASIC16.31■□□□□ 0.2
COL4A5P29400 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC16.31■□□□□ 0.2
COL4A5P29400 ANKRD42-201ENST00000260047 2514 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
COL4A5P29400 PAEP-201ENST00000277508 821 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
COL4A5P29400 SLC39A1-201ENST00000310483 2427 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
COL4A5P29400 IQCE-201ENST00000325979 2179 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
COL4A5P29400 ECHDC2-201ENST00000358358 1126 ntTSL 2 BASIC16.3■□□□□ 0.2
COL4A5P29400 FANK1-203ENST00000368693 1294 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
COL4A5P29400 TCEAL5-201ENST00000372680 1168 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
COL4A5P29400 IGHV3-11-201ENST00000390601 473 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
COL4A5P29400 SNX11-202ENST00000393405 2733 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
COL4A5P29400 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC16.3■□□□□ 0.2
COL4A5P29400 EFR3B-203ENST00000402191 3685 ntTSL 5 BASIC16.3■□□□□ 0.2
COL4A5P29400 AL589935.1-203ENST00000412751 465 ntTSL 3 BASIC16.3■□□□□ 0.2
COL4A5P29400 AL590399.1-204ENST00000430302 781 ntTSL 5 BASIC16.3■□□□□ 0.2
COL4A5P29400 HNRNPA1P3-201ENST00000440968 551 ntBASIC16.3■□□□□ 0.2
COL4A5P29400 CHRD-206ENST00000450923 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
COL4A5P29400 AC008021.1-201ENST00000474180 414 ntBASIC16.3■□□□□ 0.2
COL4A5P29400 AC068858.1-201ENST00000525114 1239 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
COL4A5P29400 KIRREL3-202ENST00000525704 2474 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
COL4A5P29400 BBOX1-AS1-203ENST00000530430 879 ntTSL 4 BASIC16.3■□□□□ 0.2
COL4A5P29400 BBOX1-AS1-204ENST00000531363 745 ntTSL 2 BASIC16.3■□□□□ 0.2
COL4A5P29400 NUMB-216ENST00000555394 3037 ntAPPRIS ALT1 TSL 1 (best) BASIC16.3■□□□□ 0.2
COL4A5P29400 LINC00637-201ENST00000556586 2056 ntTSL 2 BASIC16.3■□□□□ 0.2
COL4A5P29400 AC106785.2-201ENST00000564385 1319 ntBASIC16.3■□□□□ 0.2
COL4A5P29400 CDH16-204ENST00000565796 2694 ntTSL 2 BASIC16.3■□□□□ 0.2
COL4A5P29400 Z92544.2-202ENST00000566927 407 ntTSL 3 BASIC16.3■□□□□ 0.2
COL4A5P29400 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
COL4A5P29400 CCDC159-209ENST00000588790 1408 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
COL4A5P29400 AC048380.1-201ENST00000589818 465 ntTSL 3 BASIC16.3■□□□□ 0.2
COL4A5P29400 FAM90A28P-201ENST00000596881 489 ntTSL 5 BASIC16.3■□□□□ 0.2
COL4A5P29400 AP006248.1-201ENST00000610471 67 ntBASIC16.3■□□□□ 0.2
COL4A5P29400 AC011239.2-201ENST00000624820 1489 ntBASIC16.3■□□□□ 0.2
COL4A5P29400 LIMS4-204ENST00000632897 1460 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
COL4A5P29400 ZNF362-205ENST00000539719 3106 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
COL4A5P29400 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC16.3■□□□□ 0.2
COL4A5P29400 ST3GAL3-208ENST00000361392 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
COL4A5P29400 AGPAT1-203ENST00000375107 2234 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
COL4A5P29400 SCFD2-201ENST00000388940 2221 ntTSL 2 BASIC16.3■□□□□ 0.2
COL4A5P29400 AL139260.2-201ENST00000622355 2171 ntTSL 2 BASIC16.3■□□□□ 0.2
COL4A5P29400 NAALADL1-202ENST00000355721 2100 ntTSL 5 BASIC16.3■□□□□ 0.2
COL4A5P29400 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC16.3■□□□□ 0.2
COL4A5P29400 A1CF-202ENST00000373993 1997 ntAPPRIS P4 TSL 1 (best) BASIC16.3■□□□□ 0.2
COL4A5P29400 NCBP2-204ENST00000427641 1946 ntTSL 2 BASIC16.3■□□□□ 0.2
COL4A5P29400 RECQL5-218ENST00000584999 1922 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 55.4 ms