RNA–Protein interactions for RNA: ENST00000632897.1

LIMS4-204, Transcript of LIM zinc finger domain containing 4, humanhuman

APPRIS P1 TSL 5 BASIC

Gene LIMS4, Length 1,460 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS4-204ENST00000632897 NISCHQ9Y2I1 1504 aa31.8■■■□□ 2.68
LIMS4-204ENST00000632897 CCDC180Q9P1Z9 1646 aa27.77■■■□□ 2.04
LIMS4-204ENST00000632897 ABCC9O60706 1549 aa27.5■■□□□ 1.99
LIMS4-204ENST00000632897 ZCCHC6Q5VYS8 1495 aaKnown RBP26.77■■□□□ 1.88
LIMS4-204ENST00000632897 RB1CC1Q8TDY2 1594 aa26.37■■□□□ 1.81
LIMS4-204ENST00000632897 DCAF1Q9Y4B6 1507 aa26.36■■□□□ 1.81
LIMS4-204ENST00000632897 NACADO15069 1562 aa26.2■■□□□ 1.78
LIMS4-204ENST00000632897 DCAF8L2P0C7V8 631 aa26.04■■□□□ 1.76
LIMS4-204ENST00000632897 MYO15BQ96JP2 1530 aa25.98■■□□□ 1.75
LIMS4-204ENST00000632897 SHROOM4Q9ULL8 1493 aa25.97■■□□□ 1.75
LIMS4-204ENST00000632897 UNC13AQ9UPW8 1703 aa25.69■■□□□ 1.7
LIMS4-204ENST00000632897 DNAJC5BQ9UF47 199 aa25.55■■□□□ 1.68
LIMS4-204ENST00000632897 PABPN1Q86U42 306 aaKnown RBP eCLIP25.54■■□□□ 1.68
LIMS4-204ENST00000632897 BICRAQ9NZM4 1560 aa25.44■■□□□ 1.66
LIMS4-204ENST00000632897 SCRIBQ14160 1630 aa25.4■■□□□ 1.66
LIMS4-204ENST00000632897 SUPT5HO00267 1087 aaKnown RBP25.09■■□□□ 1.61
LIMS4-204ENST00000632897 CC2D2AQ9P2K1 1620 aa24.9■■□□□ 1.58
LIMS4-204ENST00000632897 EIF4G1Q04637 1599 aaKnown RBP24.88■■□□□ 1.57
LIMS4-204ENST00000632897 CECR2Q9BXF3 1484 aa24.81■■□□□ 1.56
LIMS4-204ENST00000632897 RSF1Q96T23 1441 aaPredicted RBP24.73■■□□□ 1.55
LIMS4-204ENST00000632897 BAZ1AQ9NRL2 1556 aaPredicted RBP24.55■■□□□ 1.52
LIMS4-204ENST00000632897 MROH2BQ7Z745 1585 aa24.54■■□□□ 1.52
LIMS4-204ENST00000632897 SMARCA4P51532 1647 aa24.4■■□□□ 1.5
LIMS4-204ENST00000632897 WIZO95785 1651 aa24.34■■□□□ 1.49
LIMS4-204ENST00000632897 CHIC1Q5VXU3 224 aa24.19■■□□□ 1.46
LIMS4-204ENST00000632897 TOP2AP11388 1531 aaKnown RBP24.16■■□□□ 1.46
LIMS4-204ENST00000632897 PEG3Q9GZU2 1588 aa24.13■■□□□ 1.45
LIMS4-204ENST00000632897 NCAPD3P42695 1498 aa24.11■■□□□ 1.45
LIMS4-204ENST00000632897 SMARCA2P51531 1590 aa24.07■■□□□ 1.44
LIMS4-204ENST00000632897 ATAD2BQ9ULI0 1458 aa24.02■■□□□ 1.44
LIMS4-204ENST00000632897 HMGXB3Q12766 1538 aa24.01■■□□□ 1.43
LIMS4-204ENST00000632897 CCDC88BA6NC98 1476 aa23.87■■□□□ 1.41
LIMS4-204ENST00000632897 BAZ1BQ9UIG0 1483 aaKnown RBP23.86■■□□□ 1.41
LIMS4-204ENST00000632897 ERCC6Q03468 1493 aa23.85■■□□□ 1.41
LIMS4-204ENST00000632897 CUX2O14529 1486 aa23.81■■□□□ 1.4
LIMS4-204ENST00000632897 TRIM41Q8WV44 630 aa23.63■■□□□ 1.37
LIMS4-204ENST00000632897 LAMC3Q9Y6N6 1575 aa23.63■■□□□ 1.37
LIMS4-204ENST00000632897 NESP48681 1621 aa23.6■■□□□ 1.37
LIMS4-204ENST00000632897 DNAJC5Q9H3Z4 198 aa23.55■■□□□ 1.36
LIMS4-204ENST00000632897 PDS5BQ9NTI5 1447 aa23.48■■□□□ 1.35
LIMS4-204ENST00000632897 THOC2Q8NI27 1593 aaKnown RBP23.46■■□□□ 1.35
LIMS4-204ENST00000632897 KIF21AQ7Z4S6 1674 aa23.41■■□□□ 1.34
LIMS4-204ENST00000632897 ABCC8Q09428 1581 aa23.4■■□□□ 1.34
LIMS4-204ENST00000632897 CADPSQ9ULU8 1353 aa23.37■■□□□ 1.33
LIMS4-204ENST00000632897 WRNQ14191 1432 aaPredicted RBP eCLIP23.28■■□□□ 1.32
LIMS4-204ENST00000632897 MRC2Q9UBG0 1479 aa23.25■■□□□ 1.31
LIMS4-204ENST00000632897 CFTRP13569 1480 aa23.24■■□□□ 1.31
LIMS4-204ENST00000632897 LOC105371045A0A1W2PR82 267 aa23.2■■□□□ 1.3
LIMS4-204ENST00000632897 CEP164Q9UPV0 1460 aa23.19■■□□□ 1.3
LIMS4-204ENST00000632897 WDR62O43379 1518 aa23.18■■□□□ 1.3
LIMS4-204ENST00000632897 PRDM2Q13029 1718 aa23.17■■□□□ 1.3
LIMS4-204ENST00000632897 SYNJ1O43426 1573 aa23.16■■□□□ 1.3
LIMS4-204ENST00000632897 EEA1Q15075 1411 aa23.13■■□□□ 1.29
LIMS4-204ENST00000632897 FAM9AQ8IZU1 332 aaPredicted RBP23.13■■□□□ 1.29
LIMS4-204ENST00000632897 FANCD2Q9BXW9 1451 aa23.12■■□□□ 1.29
LIMS4-204ENST00000632897 TOP2BQ02880 1626 aa23.09■■□□□ 1.29
LIMS4-204ENST00000632897 BIVM-ERCC5R4GMW8 1640 aa23.07■■□□□ 1.28
LIMS4-204ENST00000632897 SOGA1O94964 1423 aa23.02■■□□□ 1.28
LIMS4-204ENST00000632897 CUX1P39880 1505 aa22.95■■□□□ 1.26
LIMS4-204ENST00000632897 CSRNP3Q8WYN3 585 aa22.89■■□□□ 1.25
LIMS4-204ENST00000632897 RUSC2Q8N2Y8 1516 aa22.89■■□□□ 1.25
LIMS4-204ENST00000632897 URB2Q14146 1524 aaKnown RBP22.87■■□□□ 1.25
LIMS4-204ENST00000632897 KIF21BO75037 1637 aa22.8■■□□□ 1.24
LIMS4-204ENST00000632897 GOLGA3Q08378 1498 aa22.77■■□□□ 1.24
LIMS4-204ENST00000632897 TNIKQ9UKE5 1360 aa22.74■■□□□ 1.23
LIMS4-204ENST00000632897 EHMT2Q96KQ7 1210 aa22.73■■□□□ 1.23
LIMS4-204ENST00000632897 IFT140Q96RY7 1462 aa22.72■■□□□ 1.23
LIMS4-204ENST00000632897 DNMBPQ6XZF7 1577 aa22.71■■□□□ 1.23
LIMS4-204ENST00000632897 KIF27Q86VH2 1401 aa22.69■■□□□ 1.22
LIMS4-204ENST00000632897 TOPBP1Q92547 1522 aa22.69■■□□□ 1.22
LIMS4-204ENST00000632897 OSCARQ8IYS5 282 aa22.66■■□□□ 1.22
LIMS4-204ENST00000632897 FGD5Q6ZNL6 1462 aa22.66■■□□□ 1.22
LIMS4-204ENST00000632897 ERICH3Q5RHP9 1530 aa22.61■■□□□ 1.21
LIMS4-204ENST00000632897 CEP162Q5TB80 1403 aa22.61■■□□□ 1.21
LIMS4-204ENST00000632897 PRXQ9BXM0 1461 aa22.59■■□□□ 1.21
LIMS4-204ENST00000632897 UBTFP17480 764 aaKnown RBP22.58■■□□□ 1.2
LIMS4-204ENST00000632897 RAPGEF2Q9Y4G8 1499 aa22.55■■□□□ 1.2
LIMS4-204ENST00000632897 ZNF608Q9ULD9 1512 aaPredicted RBP22.54■■□□□ 1.2
LIMS4-204ENST00000632897 EIF4G3O43432 1585 aaKnown RBP22.53■■□□□ 1.2
LIMS4-204ENST00000632897 POLA1P09884 1462 aaPredicted RBP22.52■■□□□ 1.2
LIMS4-204ENST00000632897 ABCA10Q8WWZ4 1543 aa22.5■■□□□ 1.19
LIMS4-204ENST00000632897 TARBP1Q13395 1621 aaKnown RBP22.47■■□□□ 1.19
LIMS4-204ENST00000632897 IGF1RP08069 1367 aa22.44■■□□□ 1.18
LIMS4-204ENST00000632897 RAD54L2Q9Y4B4 1467 aa22.42■■□□□ 1.18
LIMS4-204ENST00000632897 WDR97A6NE52 1622 aa22.42■■□□□ 1.18
LIMS4-204ENST00000632897 TRIM26Q12899 539 aaPredicted RBP22.41■■□□□ 1.18
LIMS4-204ENST00000632897 CLIP1P30622 1438 aa22.39■■□□□ 1.17
LIMS4-204ENST00000632897 PCGF6Q9BYE7 350 aa22.39■■□□□ 1.17
LIMS4-204ENST00000632897 AQRO60306 1485 aaKnown RBP eCLIP22.36■■□□□ 1.17
LIMS4-204ENST00000632897 CHD1O14646 1710 aa22.35■■□□□ 1.17
LIMS4-204ENST00000632897 RIMBP3CA6NJZ7 1639 aa22.35■■□□□ 1.17
LIMS4-204ENST00000632897 RIMBP3BA6NNM3 1639 aa22.35■■□□□ 1.17
LIMS4-204ENST00000632897 RIMBP3Q9UFD9 1639 aa22.35■■□□□ 1.17
LIMS4-204ENST00000632897 CARMIL1Q5VZK9 1371 aa22.33■■□□□ 1.17
LIMS4-204ENST00000632897 CUL7Q14999 1698 aa22.31■■□□□ 1.16
LIMS4-204ENST00000632897 ABCA5Q8WWZ7 1642 aa22.3■■□□□ 1.16
LIMS4-204ENST00000632897 ARHGEF11O15085 1522 aa22.29■■□□□ 1.16
LIMS4-204ENST00000632897 VPS8Q8N3P4 1428 aa22.24■■□□□ 1.15
LIMS4-204ENST00000632897 TDRD9Q8NDG6 1382 aaKnown RBP22.23■■□□□ 1.15
LIMS4-204ENST00000632897 FBLN2P98095 1184 aa22.23■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms