RNA–Protein interactions for RNA: ENST00000373993.5

A1CF-202, Transcript of APOBEC1 complementation factor, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene A1CF, Length 1,997 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
A1CF-202ENST00000373993 NISCHQ9Y2I1 1504 aa31.17■■■□□ 2.58
A1CF-202ENST00000373993 CCDC180Q9P1Z9 1646 aa27.83■■■□□ 2.05
A1CF-202ENST00000373993 ABCC9O60706 1549 aa27.65■■■□□ 2.02
A1CF-202ENST00000373993 RB1CC1Q8TDY2 1594 aa26.37■■□□□ 1.81
A1CF-202ENST00000373993 DCAF8L2P0C7V8 631 aa26.35■■□□□ 1.81
A1CF-202ENST00000373993 NACADO15069 1562 aa26.22■■□□□ 1.79
A1CF-202ENST00000373993 ZCCHC6Q5VYS8 1495 aaKnown RBP25.9■■□□□ 1.74
A1CF-202ENST00000373993 MYO15BQ96JP2 1530 aa25.88■■□□□ 1.73
A1CF-202ENST00000373993 UNC13AQ9UPW8 1703 aa25.85■■□□□ 1.73
A1CF-202ENST00000373993 PABPN1Q86U42 306 aaKnown RBP eCLIP25.8■■□□□ 1.72
A1CF-202ENST00000373993 DCAF1Q9Y4B6 1507 aa25.68■■□□□ 1.7
A1CF-202ENST00000373993 DNAJC5BQ9UF47 199 aa25.61■■□□□ 1.69
A1CF-202ENST00000373993 BICRAQ9NZM4 1560 aa25.59■■□□□ 1.69
A1CF-202ENST00000373993 SCRIBQ14160 1630 aa25.51■■□□□ 1.67
A1CF-202ENST00000373993 SHROOM4Q9ULL8 1493 aa25.17■■□□□ 1.62
A1CF-202ENST00000373993 CC2D2AQ9P2K1 1620 aa24.96■■□□□ 1.59
A1CF-202ENST00000373993 EIF4G1Q04637 1599 aaKnown RBP24.96■■□□□ 1.59
A1CF-202ENST00000373993 CECR2Q9BXF3 1484 aa24.83■■□□□ 1.56
A1CF-202ENST00000373993 SMARCA4P51532 1647 aa24.29■■□□□ 1.48
A1CF-202ENST00000373993 ATAD2BQ9ULI0 1458 aa24.2■■□□□ 1.46
A1CF-202ENST00000373993 BAZ1AQ9NRL2 1556 aaPredicted RBP24.19■■□□□ 1.46
A1CF-202ENST00000373993 NCAPD3P42695 1498 aa24.18■■□□□ 1.46
A1CF-202ENST00000373993 SMARCA2P51531 1590 aa24.14■■□□□ 1.46
A1CF-202ENST00000373993 MROH2BQ7Z745 1585 aa24.07■■□□□ 1.44
A1CF-202ENST00000373993 HMGXB3Q12766 1538 aa24.06■■□□□ 1.44
A1CF-202ENST00000373993 BAZ1BQ9UIG0 1483 aaKnown RBP24.03■■□□□ 1.44
A1CF-202ENST00000373993 HRCP23327 699 aa24■■□□□ 1.43
A1CF-202ENST00000373993 PEG3Q9GZU2 1588 aa23.97■■□□□ 1.43
A1CF-202ENST00000373993 PELP1Q8IZL8 1130 aaKnown RBP23.96■■□□□ 1.43
A1CF-202ENST00000373993 ERCC6Q03468 1493 aa23.85■■□□□ 1.41
A1CF-202ENST00000373993 WIZO95785 1651 aa23.84■■□□□ 1.41
A1CF-202ENST00000373993 NESP48681 1621 aa23.84■■□□□ 1.41
A1CF-202ENST00000373993 RSF1Q96T23 1441 aaPredicted RBP23.65■■□□□ 1.38
A1CF-202ENST00000373993 LAMC3Q9Y6N6 1575 aa23.64■■□□□ 1.37
A1CF-202ENST00000373993 CUX2O14529 1486 aa23.59■■□□□ 1.37
A1CF-202ENST00000373993 KIF21AQ7Z4S6 1674 aa23.55■■□□□ 1.36
A1CF-202ENST00000373993 CADPSQ9ULU8 1353 aa23.5■■□□□ 1.35
A1CF-202ENST00000373993 THOC2Q8NI27 1593 aaKnown RBP23.49■■□□□ 1.35
A1CF-202ENST00000373993 TOP2AP11388 1531 aaKnown RBP23.49■■□□□ 1.35
A1CF-202ENST00000373993 PDS5BQ9NTI5 1447 aa23.49■■□□□ 1.35
A1CF-202ENST00000373993 MYT1Q01538 1121 aa23.31■■□□□ 1.32
A1CF-202ENST00000373993 CFTRP13569 1480 aa23.29■■□□□ 1.32
A1CF-202ENST00000373993 MRC2Q9UBG0 1479 aa23.29■■□□□ 1.32
A1CF-202ENST00000373993 CEP164Q9UPV0 1460 aa23.28■■□□□ 1.32
A1CF-202ENST00000373993 FANCD2Q9BXW9 1451 aa23.28■■□□□ 1.32
A1CF-202ENST00000373993 CCDC88BA6NC98 1476 aa23.24■■□□□ 1.31
A1CF-202ENST00000373993 DNAJC5Q9H3Z4 198 aa23.23■■□□□ 1.31
A1CF-202ENST00000373993 WDR62O43379 1518 aa23.21■■□□□ 1.31
A1CF-202ENST00000373993 PRDM2Q13029 1718 aa23.15■■□□□ 1.3
A1CF-202ENST00000373993 URB2Q14146 1524 aaKnown RBP23.06■■□□□ 1.28
A1CF-202ENST00000373993 PCGF6Q9BYE7 350 aa23.01■■□□□ 1.27
A1CF-202ENST00000373993 SUPT5HO00267 1087 aaKnown RBP22.97■■□□□ 1.27
A1CF-202ENST00000373993 CHIC1Q5VXU3 224 aa22.93■■□□□ 1.26
A1CF-202ENST00000373993 ZEB1P37275 1124 aaPredicted RBP22.89■■□□□ 1.26
A1CF-202ENST00000373993 TOPBP1Q92547 1522 aa22.86■■□□□ 1.25
A1CF-202ENST00000373993 PPARGC1BQ86YN6 1023 aaKnown RBP22.85■■□□□ 1.25
A1CF-202ENST00000373993 DNMBPQ6XZF7 1577 aa22.8■■□□□ 1.24
A1CF-202ENST00000373993 ABCC8Q09428 1581 aa22.76■■□□□ 1.23
A1CF-202ENST00000373993 ZNF608Q9ULD9 1512 aaPredicted RBP22.76■■□□□ 1.23
A1CF-202ENST00000373993 IFT140Q96RY7 1462 aa22.76■■□□□ 1.23
A1CF-202ENST00000373993 TRIM26Q12899 539 aaPredicted RBP22.69■■□□□ 1.22
A1CF-202ENST00000373993 EIF4G3O43432 1585 aaKnown RBP22.66■■□□□ 1.22
A1CF-202ENST00000373993 POLA1P09884 1462 aaPredicted RBP22.66■■□□□ 1.22
A1CF-202ENST00000373993 TARBP1Q13395 1621 aaKnown RBP22.63■■□□□ 1.21
A1CF-202ENST00000373993 RAD54L2Q9Y4B4 1467 aa22.61■■□□□ 1.21
A1CF-202ENST00000373993 OSCARQ8IYS5 282 aa22.6■■□□□ 1.21
A1CF-202ENST00000373993 AQRO60306 1485 aaKnown RBP eCLIP22.59■■□□□ 1.214e-7■■■□□ 15.4
A1CF-202ENST00000373993 CUX1P39880 1505 aa22.59■■□□□ 1.21
A1CF-202ENST00000373993 FGD5Q6ZNL6 1462 aa22.58■■□□□ 1.2
A1CF-202ENST00000373993 SOGA1O94964 1423 aa22.55■■□□□ 1.2
A1CF-202ENST00000373993 SCAF1Q9H7N4 1312 aaKnown RBP22.53■■□□□ 1.2
A1CF-202ENST00000373993 TRIM41Q8WV44 630 aa22.51■■□□□ 1.19
A1CF-202ENST00000373993 TDRD9Q8NDG6 1382 aaKnown RBP22.5■■□□□ 1.19
A1CF-202ENST00000373993 CHD1O14646 1710 aa22.46■■□□□ 1.19
A1CF-202ENST00000373993 FBLN2P98095 1184 aa22.45■■□□□ 1.18
A1CF-202ENST00000373993 WDR97A6NE52 1622 aa22.39■■□□□ 1.17
A1CF-202ENST00000373993 SNAPC4Q5SXM2 1469 aa22.37■■□□□ 1.17
A1CF-202ENST00000373993 SYNJ1O43426 1573 aa22.33■■□□□ 1.17
A1CF-202ENST00000373993 WRNQ14191 1432 aaPredicted RBP eCLIP22.33■■□□□ 1.17
A1CF-202ENST00000373993 RIMBP3CA6NJZ7 1639 aa22.33■■□□□ 1.16
A1CF-202ENST00000373993 RIMBP3BA6NNM3 1639 aa22.33■■□□□ 1.16
A1CF-202ENST00000373993 RIMBP3Q9UFD9 1639 aa22.33■■□□□ 1.16
A1CF-202ENST00000373993 PBRM1Q86U86 1689 aa22.32■■□□□ 1.16
A1CF-202ENST00000373993 GRIN2BQ13224 1484 aa22.3■■□□□ 1.16
A1CF-202ENST00000373993 BIVM-ERCC5R4GMW8 1640 aa22.3■■□□□ 1.16
A1CF-202ENST00000373993 TOP2BQ02880 1626 aa22.3■■□□□ 1.16
A1CF-202ENST00000373993 GAPVD1Q14C86 1478 aa22.29■■□□□ 1.16
A1CF-202ENST00000373993 ABCA10Q8WWZ4 1543 aa22.28■■□□□ 1.16
A1CF-202ENST00000373993 ARHGEF11O15085 1522 aa22.27■■□□□ 1.16
A1CF-202ENST00000373993 CHMP7Q8WUX9 453 aaPredicted RBP22.27■■□□□ 1.15
A1CF-202ENST00000373993 MAGI1Q96QZ7 1491 aaPredicted RBP22.26■■□□□ 1.15
A1CF-202ENST00000373993 ABCA5Q8WWZ7 1642 aa22.26■■□□□ 1.15
A1CF-202ENST00000373993 SYNJ2O15056 1496 aa22.2■■□□□ 1.14
A1CF-202ENST00000373993 ACIN1Q9UKV3 1341 aaKnown RBP22.18■■□□□ 1.14
A1CF-202ENST00000373993 CYB5RLQ6IPT4 315 aa22.12■■□□□ 1.13
A1CF-202ENST00000373993 CLASP1Q7Z460 1538 aa22.12■■□□□ 1.13
A1CF-202ENST00000373993 ADAMTS12P58397 1594 aa22.08■■□□□ 1.13
A1CF-202ENST00000373993 ARAP1Q96P48 1450 aa22.06■■□□□ 1.12
A1CF-202ENST00000373993 TTBK1Q5TCY1 1321 aaPredicted RBP22.05■■□□□ 1.12
A1CF-202ENST00000373993 GRIN2AQ12879 1464 aa22.04■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 52.8 ms