RNA–Protein interactions for RNA: ENST00000426508.6

IFT140-203, Transcript of intraflagellar transport 140, humanhuman

APPRIS P1 TSL 5 BASIC

Gene IFT140, Length 5,270 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
IFT140-203ENST00000426508 NISCHQ9Y2I1 1504 aa31.26■■■□□ 2.6
IFT140-203ENST00000426508 DCAF8L2P0C7V8 631 aa29.88■■■□□ 2.37
IFT140-203ENST00000426508 SHROOM4Q9ULL8 1493 aa28.33■■■□□ 2.13
IFT140-203ENST00000426508 SUPT5HO00267 1087 aaKnown RBP28.24■■■□□ 2.11
IFT140-203ENST00000426508 EHMT2Q96KQ7 1210 aa26.68■■□□□ 1.86
IFT140-203ENST00000426508 ABCC9O60706 1549 aa26.61■■□□□ 1.85
IFT140-203ENST00000426508 FAM9AQ8IZU1 332 aaPredicted RBP26.43■■□□□ 1.82
IFT140-203ENST00000426508 TRIM41Q8WV44 630 aa26.34■■□□□ 1.81
IFT140-203ENST00000426508 CCDC180Q9P1Z9 1646 aa26.21■■□□□ 1.79
IFT140-203ENST00000426508 PCGF6Q9BYE7 350 aa26.16■■□□□ 1.78
IFT140-203ENST00000426508 APLP2Q06481 763 aa26.1■■□□□ 1.77
IFT140-203ENST00000426508 ZCCHC6Q5VYS8 1495 aaKnown RBP25.98■■□□□ 1.75
IFT140-203ENST00000426508 PABPN1Q86U42 306 aaKnown RBP eCLIP25.97■■□□□ 1.75
IFT140-203ENST00000426508 RANGAP1P46060 587 aaPredicted RBP25.76■■□□□ 1.71
IFT140-203ENST00000426508 UBTFP17480 764 aaKnown RBP25.75■■□□□ 1.71
IFT140-203ENST00000426508 CHIC1Q5VXU3 224 aa25.7■■□□□ 1.7
IFT140-203ENST00000426508 ZEB1P37275 1124 aaPredicted RBP25.69■■□□□ 1.7
IFT140-203ENST00000426508 TTBK1Q5TCY1 1321 aaPredicted RBP25.66■■□□□ 1.7
IFT140-203ENST00000426508 SCRIBQ14160 1630 aa25.55■■□□□ 1.68
IFT140-203ENST00000426508 PELP1Q8IZL8 1130 aaKnown RBP25.55■■□□□ 1.68
IFT140-203ENST00000426508 ATP1B4Q9UN42 357 aaPredicted RBP25.43■■□□□ 1.66
IFT140-203ENST00000426508 HRCP23327 699 aa25.34■■□□□ 1.65
IFT140-203ENST00000426508 CCER1Q8TC90 406 aaPredicted RBP25.34■■□□□ 1.65
IFT140-203ENST00000426508 LOC105371045A0A1W2PR82 267 aa25.3■■□□□ 1.64
IFT140-203ENST00000426508 CENPBP07199 599 aaPredicted RBP25.28■■□□□ 1.64
IFT140-203ENST00000426508 RB1CC1Q8TDY2 1594 aa25.28■■□□□ 1.64
IFT140-203ENST00000426508 TRIM26Q12899 539 aaPredicted RBP25.25■■□□□ 1.63
IFT140-203ENST00000426508 NACADO15069 1562 aa25.2■■□□□ 1.62
IFT140-203ENST00000426508 PPARGC1BQ86YN6 1023 aaKnown RBP25.09■■□□□ 1.61
IFT140-203ENST00000426508 DCAF1Q9Y4B6 1507 aa25.07■■□□□ 1.6
IFT140-203ENST00000426508 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.75■■□□□ 1.55
IFT140-203ENST00000426508 HNRNPUL2Q1KMD3 747 aaKnown RBP24.75■■□□□ 1.55
IFT140-203ENST00000426508 RSF1Q96T23 1441 aaPredicted RBP24.75■■□□□ 1.55
IFT140-203ENST00000426508 YTHDC1Q96MU7 727 aaKnown RBP24.68■■□□□ 1.54
IFT140-203ENST00000426508 CSRNP3Q8WYN3 585 aa24.63■■□□□ 1.53
IFT140-203ENST00000426508 ITGAEP38570 1179 aa24.61■■□□□ 1.53
IFT140-203ENST00000426508 MYO15BQ96JP2 1530 aa24.51■■□□□ 1.51
IFT140-203ENST00000426508 BAZ1AQ9NRL2 1556 aaPredicted RBP24.47■■□□□ 1.51
IFT140-203ENST00000426508 MYT1Q01538 1121 aa24.46■■□□□ 1.51
IFT140-203ENST00000426508 CECR2Q9BXF3 1484 aa24.45■■□□□ 1.5
IFT140-203ENST00000426508 BAZ1BQ9UIG0 1483 aaKnown RBP24.41■■□□□ 1.5
IFT140-203ENST00000426508 FBLN2P98095 1184 aa24.4■■□□□ 1.5
IFT140-203ENST00000426508 ERICH6Q7L0X2 663 aa24.39■■□□□ 1.49
IFT140-203ENST00000426508 NEFLP07196 543 aa24.38■■□□□ 1.49
IFT140-203ENST00000426508 MYT1LQ9UL68 1186 aa24.32■■□□□ 1.48
IFT140-203ENST00000426508 FAM50AQ14320 339 aaKnown RBP24.25■■□□□ 1.47
IFT140-203ENST00000426508 DIEXFQ68CQ4 756 aaKnown RBP24.22■■□□□ 1.47
IFT140-203ENST00000426508 P3H3Q8IVL6 736 aa24.21■■□□□ 1.47
IFT140-203ENST00000426508 MROH2BQ7Z745 1585 aa24.17■■□□□ 1.46
IFT140-203ENST00000426508 WRNQ14191 1432 aaPredicted RBP eCLIP24.1■■□□□ 1.45
IFT140-203ENST00000426508 EEA1Q15075 1411 aa24.02■■□□□ 1.44
IFT140-203ENST00000426508 SMARCA2P51531 1590 aa23.97■■□□□ 1.43
IFT140-203ENST00000426508 ARID3CA6NKF2 412 aa23.95■■□□□ 1.42
IFT140-203ENST00000426508 TRIM52Q96A61 297 aa23.93■■□□□ 1.42
IFT140-203ENST00000426508 CCDC88BA6NC98 1476 aa23.91■■□□□ 1.42
IFT140-203ENST00000426508 CDK11AQ9UQ88 783 aaPredicted RBP23.88■■□□□ 1.41
IFT140-203ENST00000426508 WIZO95785 1651 aa23.84■■□□□ 1.41
IFT140-203ENST00000426508 GOLGA3Q08378 1498 aa23.83■■□□□ 1.41
IFT140-203ENST00000426508 KIF27Q86VH2 1401 aa23.83■■□□□ 1.4
IFT140-203ENST00000426508 CLIP1P30622 1438 aa23.81■■□□□ 1.4
IFT140-203ENST00000426508 TOP2AP11388 1531 aaKnown RBP23.81■■□□□ 1.4
IFT140-203ENST00000426508 GTF3C3Q9Y5Q9 886 aa23.8■■□□□ 1.4
IFT140-203ENST00000426508 CHMP7Q8WUX9 453 aaPredicted RBP23.79■■□□□ 1.4
IFT140-203ENST00000426508 POLR3GLQ9BT43 218 aa23.78■■□□□ 1.4
IFT140-203ENST00000426508 ZNF316A6NFI3 1004 aaPredicted RBP23.76■■□□□ 1.39
IFT140-203ENST00000426508 NEUROD1Q13562 356 aa23.75■■□□□ 1.39
IFT140-203ENST00000426508 SMARCA4P51532 1647 aa23.74■■□□□ 1.39
IFT140-203ENST00000426508 ATAD2BQ9ULI0 1458 aa23.71■■□□□ 1.39
IFT140-203ENST00000426508 CEP164Q9UPV0 1460 aa23.7■■□□□ 1.38
IFT140-203ENST00000426508 CEP162Q5TB80 1403 aa23.69■■□□□ 1.38
IFT140-203ENST00000426508 ZNF777Q9ULD5 760 aaPredicted RBP23.69■■□□□ 1.38
IFT140-203ENST00000426508 ACIN1Q9UKV3 1341 aaKnown RBP23.68■■□□□ 1.38
IFT140-203ENST00000426508 ERCC6Q03468 1493 aa23.68■■□□□ 1.38
IFT140-203ENST00000426508 TNIKQ9UKE5 1360 aa23.66■■□□□ 1.38
IFT140-203ENST00000426508 ABCC8Q09428 1581 aa23.6■■□□□ 1.37
IFT140-203ENST00000426508 SOGA1O94964 1423 aa23.59■■□□□ 1.37
IFT140-203ENST00000426508 CUX2O14529 1486 aa23.54■■□□□ 1.36
IFT140-203ENST00000426508 PDS5BQ9NTI5 1447 aa23.54■■□□□ 1.36
IFT140-203ENST00000426508 MTUS2Q5JR59 1369 aa23.54■■□□□ 1.36
IFT140-203ENST00000426508 NPM1P06748 294 aaKnown RBP eCLIP23.52■■□□□ 1.36
IFT140-203ENST00000426508 CADPSQ9ULU8 1353 aa23.51■■□□□ 1.35
IFT140-203ENST00000426508 CNGB1Q14028 1251 aaPredicted RBP23.46■■□□□ 1.35
IFT140-203ENST00000426508 CARMIL1Q5VZK9 1371 aa23.46■■□□□ 1.35
IFT140-203ENST00000426508 ZNF326Q5BKZ1 582 aaKnown RBP23.45■■□□□ 1.34
IFT140-203ENST00000426508 ANP32CO43423 234 aa23.38■■□□□ 1.33
IFT140-203ENST00000426508 CHIC2Q9UKJ5 165 aa23.35■■□□□ 1.33
IFT140-203ENST00000426508 BCANQ96GW7 911 aa23.34■■□□□ 1.33
IFT140-203ENST00000426508 SLC4A1APQ9BWU0 796 aaKnown RBP23.33■■□□□ 1.32
IFT140-203ENST00000426508 DAXXQ9UER7 740 aaPredicted RBP23.33■■□□□ 1.32
IFT140-203ENST00000426508 PLEKHD1A6NEE1 506 aa23.29■■□□□ 1.32
IFT140-203ENST00000426508 TSPY4P0CV99 314 aa23.28■■□□□ 1.32
IFT140-203ENST00000426508 TSPY10P0CW01 314 aa23.28■■□□□ 1.32
IFT140-203ENST00000426508 NCAPD3P42695 1498 aa23.27■■□□□ 1.32
IFT140-203ENST00000426508 EIF4G1Q04637 1599 aaKnown RBP23.27■■□□□ 1.32
IFT140-203ENST00000426508 TDRD9Q8NDG6 1382 aaKnown RBP23.25■■□□□ 1.31
IFT140-203ENST00000426508 TONSLQ96HA7 1378 aa23.22■■□□□ 1.31
IFT140-203ENST00000426508 FHAD1B1AJZ9 1412 aa23.22■■□□□ 1.31
IFT140-203ENST00000426508 FANCD2Q9BXW9 1451 aa23.19■■□□□ 1.3
IFT140-203ENST00000426508 CLSPNQ9HAW4 1339 aa23.17■■□□□ 1.3
IFT140-203ENST00000426508 KCNH8Q96L42 1107 aa23.17■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms