RNA–Protein interactions for RNA: ENST00000539522.2

CCDC42-202, Transcript of coiled-coil domain containing 42, humanhuman

TSL 1 (best) BASIC

Gene CCDC42, Length 1,087 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42-202ENST00000539522 NISCHQ9Y2I1 1504 aa31.44■■■□□ 2.62
CCDC42-202ENST00000539522 CCDC180Q9P1Z9 1646 aa27.81■■■□□ 2.04
CCDC42-202ENST00000539522 ABCC9O60706 1549 aa26.91■■□□□ 1.9
CCDC42-202ENST00000539522 ZCCHC6Q5VYS8 1495 aaKnown RBP26.27■■□□□ 1.8
CCDC42-202ENST00000539522 NACADO15069 1562 aa26.03■■□□□ 1.76
CCDC42-202ENST00000539522 DCAF1Q9Y4B6 1507 aa26.01■■□□□ 1.75
CCDC42-202ENST00000539522 MYO15BQ96JP2 1530 aa25.98■■□□□ 1.75
CCDC42-202ENST00000539522 RB1CC1Q8TDY2 1594 aa25.97■■□□□ 1.75
CCDC42-202ENST00000539522 DCAF8L2P0C7V8 631 aa25.94■■□□□ 1.74
CCDC42-202ENST00000539522 UNC13AQ9UPW8 1703 aa25.6■■□□□ 1.69
CCDC42-202ENST00000539522 SCRIBQ14160 1630 aa25.41■■□□□ 1.66
CCDC42-202ENST00000539522 BICRAQ9NZM4 1560 aa25.35■■□□□ 1.65
CCDC42-202ENST00000539522 PABPN1Q86U42 306 aaKnown RBP eCLIP25.17■■□□□ 1.62
CCDC42-202ENST00000539522 SHROOM4Q9ULL8 1493 aa24.96■■□□□ 1.59
CCDC42-202ENST00000539522 EIF4G1Q04637 1599 aaKnown RBP24.56■■□□□ 1.52
CCDC42-202ENST00000539522 DNAJC5BQ9UF47 199 aa24.54■■□□□ 1.52
CCDC42-202ENST00000539522 CECR2Q9BXF3 1484 aa24.51■■□□□ 1.51
CCDC42-202ENST00000539522 CC2D2AQ9P2K1 1620 aa24.39■■□□□ 1.5
CCDC42-202ENST00000539522 SMARCA4P51532 1647 aa24.35■■□□□ 1.49
CCDC42-202ENST00000539522 MROH2BQ7Z745 1585 aa24.29■■□□□ 1.48
CCDC42-202ENST00000539522 BAZ1AQ9NRL2 1556 aaPredicted RBP24.29■■□□□ 1.48
CCDC42-202ENST00000539522 PEG3Q9GZU2 1588 aa24.12■■□□□ 1.45
CCDC42-202ENST00000539522 ATAD2BQ9ULI0 1458 aa24.12■■□□□ 1.45
CCDC42-202ENST00000539522 RSF1Q96T23 1441 aaPredicted RBP24.07■■□□□ 1.44
CCDC42-202ENST00000539522 WIZO95785 1651 aa24.05■■□□□ 1.44
CCDC42-202ENST00000539522 NCAPD3P42695 1498 aa24.04■■□□□ 1.44
CCDC42-202ENST00000539522 SMARCA2P51531 1590 aa24.03■■□□□ 1.44
CCDC42-202ENST00000539522 HMGXB3Q12766 1538 aa23.95■■□□□ 1.43
CCDC42-202ENST00000539522 BAZ1BQ9UIG0 1483 aaKnown RBP23.87■■□□□ 1.41
CCDC42-202ENST00000539522 TOP2AP11388 1531 aaKnown RBP23.74■■□□□ 1.39
CCDC42-202ENST00000539522 SUPT5HO00267 1087 aaKnown RBP23.55■■□□□ 1.36
CCDC42-202ENST00000539522 CCDC88BA6NC98 1476 aa23.48■■□□□ 1.35
CCDC42-202ENST00000539522 NESP48681 1621 aa23.44■■□□□ 1.34
CCDC42-202ENST00000539522 LAMC3Q9Y6N6 1575 aa23.34■■□□□ 1.33
CCDC42-202ENST00000539522 CADPSQ9ULU8 1353 aa23.31■■□□□ 1.32
CCDC42-202ENST00000539522 CFTRP13569 1480 aa23.29■■□□□ 1.32
CCDC42-202ENST00000539522 PRDM2Q13029 1718 aa23.19■■□□□ 1.3
CCDC42-202ENST00000539522 KIF21AQ7Z4S6 1674 aa23.19■■□□□ 1.3
CCDC42-202ENST00000539522 PDS5BQ9NTI5 1447 aa23.08■■□□□ 1.28
CCDC42-202ENST00000539522 FANCD2Q9BXW9 1451 aa23.06■■□□□ 1.28
CCDC42-202ENST00000539522 THOC2Q8NI27 1593 aaKnown RBP23.05■■□□□ 1.28
CCDC42-202ENST00000539522 ERCC6Q03468 1493 aa23.05■■□□□ 1.28
CCDC42-202ENST00000539522 CEP164Q9UPV0 1460 aa22.97■■□□□ 1.27
CCDC42-202ENST00000539522 URB2Q14146 1524 aaKnown RBP22.9■■□□□ 1.26
CCDC42-202ENST00000539522 MRC2Q9UBG0 1479 aa22.9■■□□□ 1.26
CCDC42-202ENST00000539522 WDR62O43379 1518 aa22.88■■□□□ 1.25
CCDC42-202ENST00000539522 TOPBP1Q92547 1522 aa22.77■■□□□ 1.24
CCDC42-202ENST00000539522 CUX1P39880 1505 aa22.76■■□□□ 1.23
CCDC42-202ENST00000539522 CUX2O14529 1486 aa22.75■■□□□ 1.23
CCDC42-202ENST00000539522 ABCC8Q09428 1581 aa22.75■■□□□ 1.23
CCDC42-202ENST00000539522 DNMBPQ6XZF7 1577 aa22.75■■□□□ 1.23
CCDC42-202ENST00000539522 SYNJ1O43426 1573 aa22.67■■□□□ 1.22
CCDC42-202ENST00000539522 BIVM-ERCC5R4GMW8 1640 aa22.63■■□□□ 1.21
CCDC42-202ENST00000539522 WRNQ14191 1432 aaPredicted RBP eCLIP22.61■■□□□ 1.21
CCDC42-202ENST00000539522 TOP2BQ02880 1626 aa22.6■■□□□ 1.21
CCDC42-202ENST00000539522 POLA1P09884 1462 aaPredicted RBP22.6■■□□□ 1.21
CCDC42-202ENST00000539522 FGD5Q6ZNL6 1462 aa22.57■■□□□ 1.2
CCDC42-202ENST00000539522 TARBP1Q13395 1621 aaKnown RBP22.57■■□□□ 1.2
CCDC42-202ENST00000539522 RAD54L2Q9Y4B4 1467 aa22.52■■□□□ 1.2
CCDC42-202ENST00000539522 WDR97A6NE52 1622 aa22.49■■□□□ 1.19
CCDC42-202ENST00000539522 IFT140Q96RY7 1462 aa22.47■■□□□ 1.19
CCDC42-202ENST00000539522 ZNF608Q9ULD9 1512 aaPredicted RBP22.47■■□□□ 1.19
CCDC42-202ENST00000539522 SOGA1O94964 1423 aa22.43■■□□□ 1.18
CCDC42-202ENST00000539522 EIF4G3O43432 1585 aaKnown RBP22.38■■□□□ 1.17
CCDC42-202ENST00000539522 ABCA10Q8WWZ4 1543 aa22.36■■□□□ 1.17
CCDC42-202ENST00000539522 AQRO60306 1485 aaKnown RBP eCLIP22.33■■□□□ 1.16
CCDC42-202ENST00000539522 ABCA5Q8WWZ7 1642 aa22.31■■□□□ 1.16
CCDC42-202ENST00000539522 TDRD9Q8NDG6 1382 aaKnown RBP22.31■■□□□ 1.16
CCDC42-202ENST00000539522 CHIC1Q5VXU3 224 aa22.23■■□□□ 1.15
CCDC42-202ENST00000539522 PBRM1Q86U86 1689 aa22.23■■□□□ 1.15
CCDC42-202ENST00000539522 GAPVD1Q14C86 1478 aa22.2■■□□□ 1.14
CCDC42-202ENST00000539522 TRIM41Q8WV44 630 aa22.18■■□□□ 1.14
CCDC42-202ENST00000539522 RUSC2Q8N2Y8 1516 aa22.16■■□□□ 1.14
CCDC42-202ENST00000539522 GRIN2BQ13224 1484 aa22.14■■□□□ 1.13
CCDC42-202ENST00000539522 SNAPC4Q5SXM2 1469 aa22.12■■□□□ 1.13
CCDC42-202ENST00000539522 ERICH3Q5RHP9 1530 aa22.07■■□□□ 1.12
CCDC42-202ENST00000539522 KIF27Q86VH2 1401 aa22.06■■□□□ 1.12
CCDC42-202ENST00000539522 CHD1O14646 1710 aa22.06■■□□□ 1.12
CCDC42-202ENST00000539522 ADAMTS12P58397 1594 aa22.05■■□□□ 1.12
CCDC42-202ENST00000539522 MAGI1Q96QZ7 1491 aaPredicted RBP22.05■■□□□ 1.12
CCDC42-202ENST00000539522 IGF1RP08069 1367 aa22.03■■□□□ 1.12
CCDC42-202ENST00000539522 SYNJ2O15056 1496 aa21.97■■□□□ 1.11
CCDC42-202ENST00000539522 FHAD1B1AJZ9 1412 aa21.93■■□□□ 1.1
CCDC42-202ENST00000539522 CUL7Q14999 1698 aa21.93■■□□□ 1.1
CCDC42-202ENST00000539522 GRIN2AQ12879 1464 aa21.9■■□□□ 1.1
CCDC42-202ENST00000539522 CEP170Q5SW79 1584 aa21.86■■□□□ 1.09
CCDC42-202ENST00000539522 FBLN2P98095 1184 aa21.84■■□□□ 1.09
CCDC42-202ENST00000539522 CARMIL1Q5VZK9 1371 aa21.84■■□□□ 1.09
CCDC42-202ENST00000539522 PRXQ9BXM0 1461 aa21.83■■□□□ 1.09
CCDC42-202ENST00000539522 CHMP7Q8WUX9 453 aaPredicted RBP21.83■■□□□ 1.09
CCDC42-202ENST00000539522 CLASP1Q7Z460 1538 aa21.83■■□□□ 1.09
CCDC42-202ENST00000539522 NUP160Q12769 1436 aa21.81■■□□□ 1.08
CCDC42-202ENST00000539522 EEA1Q15075 1411 aa21.8■■□□□ 1.08
CCDC42-202ENST00000539522 OSCARQ8IYS5 282 aa21.79■■□□□ 1.08
CCDC42-202ENST00000539522 FAM9AQ8IZU1 332 aaPredicted RBP21.77■■□□□ 1.08
CCDC42-202ENST00000539522 CSRNP3Q8WYN3 585 aa21.77■■□□□ 1.08
CCDC42-202ENST00000539522 RAPGEF2Q9Y4G8 1499 aa21.76■■□□□ 1.07
CCDC42-202ENST00000539522 DNAJC5Q9H3Z4 198 aa21.72■■□□□ 1.07
CCDC42-202ENST00000539522 KIF21BO75037 1637 aa21.69■■□□□ 1.06
CCDC42-202ENST00000539522 SHROOM2Q13796 1616 aa21.67■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms