RNA–Protein interactions for RNA: ENST00000296875.3

GDF9-201, Transcript of growth differentiation factor 9, humanhuman

TSL 5 BASIC

Gene GDF9, Length 1,796 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GDF9-201ENST00000296875 NISCHQ9Y2I1 1504 aa31.61■■■□□ 2.65
GDF9-201ENST00000296875 CCDC180Q9P1Z9 1646 aa27.73■■■□□ 2.03
GDF9-201ENST00000296875 ZCCHC6Q5VYS8 1495 aaKnown RBP26.51■■□□□ 1.83
GDF9-201ENST00000296875 ABCC9O60706 1549 aa26.38■■□□□ 1.81
GDF9-201ENST00000296875 DCAF1Q9Y4B6 1507 aa26.17■■□□□ 1.78
GDF9-201ENST00000296875 DCAF8L2P0C7V8 631 aa26■■□□□ 1.75
GDF9-201ENST00000296875 MYO15BQ96JP2 1530 aa25.97■■□□□ 1.75
GDF9-201ENST00000296875 NACADO15069 1562 aa25.85■■□□□ 1.73
GDF9-201ENST00000296875 SHROOM4Q9ULL8 1493 aa25.7■■□□□ 1.7
GDF9-201ENST00000296875 RB1CC1Q8TDY2 1594 aa25.67■■□□□ 1.7
GDF9-201ENST00000296875 SCRIBQ14160 1630 aa25.4■■□□□ 1.66
GDF9-201ENST00000296875 UNC13AQ9UPW8 1703 aa25.27■■□□□ 1.64
GDF9-201ENST00000296875 SUPT5HO00267 1087 aaKnown RBP25.14■■□□□ 1.62
GDF9-201ENST00000296875 BICRAQ9NZM4 1560 aa25■■□□□ 1.59
GDF9-201ENST00000296875 PABPN1Q86U42 306 aaKnown RBP eCLIP24.79■■□□□ 1.56
GDF9-201ENST00000296875 DNAJC5BQ9UF47 199 aa24.66■■□□□ 1.54
GDF9-201ENST00000296875 CECR2Q9BXF3 1484 aa24.59■■□□□ 1.53
GDF9-201ENST00000296875 CHIC1Q5VXU3 224 aa24.42■■□□□ 1.5
GDF9-201ENST00000296875 MROH2BQ7Z745 1585 aa24.42■■□□□ 1.5
GDF9-201ENST00000296875 RSF1Q96T23 1441 aaPredicted RBP24.41■■□□□ 1.5
GDF9-201ENST00000296875 BAZ1AQ9NRL2 1556 aaPredicted RBP24.4■■□□□ 1.5
GDF9-201ENST00000296875 SMARCA4P51532 1647 aa24.37■■□□□ 1.49
GDF9-201ENST00000296875 EIF4G1Q04637 1599 aaKnown RBP24.2■■□□□ 1.46
GDF9-201ENST00000296875 WIZO95785 1651 aa24.2■■□□□ 1.46
GDF9-201ENST00000296875 PEG3Q9GZU2 1588 aa24.12■■□□□ 1.45
GDF9-201ENST00000296875 ATAD2BQ9ULI0 1458 aa24.02■■□□□ 1.44
GDF9-201ENST00000296875 SMARCA2P51531 1590 aa23.99■■□□□ 1.43
GDF9-201ENST00000296875 TOP2AP11388 1531 aaKnown RBP23.93■■□□□ 1.42
GDF9-201ENST00000296875 CC2D2AQ9P2K1 1620 aa23.91■■□□□ 1.42
GDF9-201ENST00000296875 NCAPD3P42695 1498 aa23.87■■□□□ 1.41
GDF9-201ENST00000296875 BAZ1BQ9UIG0 1483 aaKnown RBP23.82■■□□□ 1.4
GDF9-201ENST00000296875 HMGXB3Q12766 1538 aa23.82■■□□□ 1.4
GDF9-201ENST00000296875 TRIM41Q8WV44 630 aa23.69■■□□□ 1.38
GDF9-201ENST00000296875 CCDC88BA6NC98 1476 aa23.68■■□□□ 1.38
GDF9-201ENST00000296875 LOC105371045A0A1W2PR82 267 aa23.44■■□□□ 1.34
GDF9-201ENST00000296875 CFTRP13569 1480 aa23.26■■□□□ 1.31
GDF9-201ENST00000296875 PCGF6Q9BYE7 350 aa23.22■■□□□ 1.31
GDF9-201ENST00000296875 CADPSQ9ULU8 1353 aa23.21■■□□□ 1.31
GDF9-201ENST00000296875 PRDM2Q13029 1718 aa23.18■■□□□ 1.3
GDF9-201ENST00000296875 HRCP23327 699 aa23.17■■□□□ 1.3
GDF9-201ENST00000296875 TRIM26Q12899 539 aaPredicted RBP23.17■■□□□ 1.3
GDF9-201ENST00000296875 FAM9AQ8IZU1 332 aaPredicted RBP23.14■■□□□ 1.3
GDF9-201ENST00000296875 EEA1Q15075 1411 aa23.12■■□□□ 1.29
GDF9-201ENST00000296875 NESP48681 1621 aa23.11■■□□□ 1.29
GDF9-201ENST00000296875 LAMC3Q9Y6N6 1575 aa23.1■■□□□ 1.29
GDF9-201ENST00000296875 ABCC8Q09428 1581 aa23.08■■□□□ 1.29
GDF9-201ENST00000296875 FANCD2Q9BXW9 1451 aa22.94■■□□□ 1.26
GDF9-201ENST00000296875 WRNQ14191 1432 aaPredicted RBP eCLIP22.94■■□□□ 1.26
GDF9-201ENST00000296875 SYNJ1O43426 1573 aa22.91■■□□□ 1.26
GDF9-201ENST00000296875 PDS5BQ9NTI5 1447 aa22.87■■□□□ 1.25
GDF9-201ENST00000296875 KIF21AQ7Z4S6 1674 aa22.87■■□□□ 1.25
GDF9-201ENST00000296875 CUX1P39880 1505 aa22.85■■□□□ 1.25
GDF9-201ENST00000296875 BIVM-ERCC5R4GMW8 1640 aa22.84■■□□□ 1.25
GDF9-201ENST00000296875 TOP2BQ02880 1626 aa22.84■■□□□ 1.25
GDF9-201ENST00000296875 CEP164Q9UPV0 1460 aa22.81■■□□□ 1.24
GDF9-201ENST00000296875 CSRNP3Q8WYN3 585 aa22.78■■□□□ 1.24
GDF9-201ENST00000296875 TNIKQ9UKE5 1360 aa22.78■■□□□ 1.24
GDF9-201ENST00000296875 ZEB1P37275 1124 aaPredicted RBP22.77■■□□□ 1.24
GDF9-201ENST00000296875 SOGA1O94964 1423 aa22.76■■□□□ 1.23
GDF9-201ENST00000296875 GOLGA3Q08378 1498 aa22.74■■□□□ 1.23
GDF9-201ENST00000296875 EHMT2Q96KQ7 1210 aa22.72■■□□□ 1.23
GDF9-201ENST00000296875 URB2Q14146 1524 aaKnown RBP22.72■■□□□ 1.23
GDF9-201ENST00000296875 DNMBPQ6XZF7 1577 aa22.71■■□□□ 1.23
GDF9-201ENST00000296875 ERCC6Q03468 1493 aa22.69■■□□□ 1.22
GDF9-201ENST00000296875 TOPBP1Q92547 1522 aa22.69■■□□□ 1.22
GDF9-201ENST00000296875 CEP162Q5TB80 1403 aa22.67■■□□□ 1.22
GDF9-201ENST00000296875 KIF21BO75037 1637 aa22.66■■□□□ 1.22
GDF9-201ENST00000296875 CUX2O14529 1486 aa22.62■■□□□ 1.21
GDF9-201ENST00000296875 MRC2Q9UBG0 1479 aa22.62■■□□□ 1.21
GDF9-201ENST00000296875 FGD5Q6ZNL6 1462 aa22.61■■□□□ 1.21
GDF9-201ENST00000296875 UBTFP17480 764 aaKnown RBP22.58■■□□□ 1.21
GDF9-201ENST00000296875 THOC2Q8NI27 1593 aaKnown RBP22.57■■□□□ 1.2
GDF9-201ENST00000296875 POLA1P09884 1462 aaPredicted RBP22.56■■□□□ 1.2
GDF9-201ENST00000296875 RUSC2Q8N2Y8 1516 aa22.56■■□□□ 1.2
GDF9-201ENST00000296875 WDR62O43379 1518 aa22.55■■□□□ 1.2
GDF9-201ENST00000296875 RAD54L2Q9Y4B4 1467 aa22.46■■□□□ 1.19
GDF9-201ENST00000296875 DNAJC5Q9H3Z4 198 aa22.44■■□□□ 1.18
GDF9-201ENST00000296875 WDR97A6NE52 1622 aa22.44■■□□□ 1.18
GDF9-201ENST00000296875 ABCA10Q8WWZ4 1543 aa22.42■■□□□ 1.18
GDF9-201ENST00000296875 TARBP1Q13395 1621 aaKnown RBP22.42■■□□□ 1.18
GDF9-201ENST00000296875 ERICH3Q5RHP9 1530 aa22.41■■□□□ 1.18
GDF9-201ENST00000296875 KIF27Q86VH2 1401 aa22.37■■□□□ 1.17
GDF9-201ENST00000296875 CLIP1P30622 1438 aa22.36■■□□□ 1.17
GDF9-201ENST00000296875 PPARGC1BQ86YN6 1023 aaKnown RBP22.31■■□□□ 1.16
GDF9-201ENST00000296875 IFT140Q96RY7 1462 aa22.3■■□□□ 1.16
GDF9-201ENST00000296875 RAPGEF2Q9Y4G8 1499 aa22.3■■□□□ 1.16
GDF9-201ENST00000296875 ABCA5Q8WWZ7 1642 aa22.29■■□□□ 1.16
GDF9-201ENST00000296875 PRXQ9BXM0 1461 aa22.28■■□□□ 1.16
GDF9-201ENST00000296875 VPS8Q8N3P4 1428 aa22.28■■□□□ 1.16
GDF9-201ENST00000296875 IGF1RP08069 1367 aa22.25■■□□□ 1.15
GDF9-201ENST00000296875 TDRD9Q8NDG6 1382 aaKnown RBP22.24■■□□□ 1.15
GDF9-201ENST00000296875 APLP2Q06481 763 aa22.23■■□□□ 1.15
GDF9-201ENST00000296875 ZNF608Q9ULD9 1512 aaPredicted RBP22.21■■□□□ 1.15
GDF9-201ENST00000296875 GAPVD1Q14C86 1478 aa22.2■■□□□ 1.15
GDF9-201ENST00000296875 AQRO60306 1485 aaKnown RBP eCLIP22.17■■□□□ 1.14
GDF9-201ENST00000296875 PBRM1Q86U86 1689 aa22.14■■□□□ 1.14
GDF9-201ENST00000296875 EIF4G3O43432 1585 aaKnown RBP22.13■■□□□ 1.13
GDF9-201ENST00000296875 CCER1Q8TC90 406 aaPredicted RBP22.12■■□□□ 1.13
GDF9-201ENST00000296875 CUL7Q14999 1698 aa22.1■■□□□ 1.13
GDF9-201ENST00000296875 CARMIL1Q5VZK9 1371 aa22.09■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms