Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 RPL28-208ENST00000559463 852 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.727e-8■□□□□ 8.2
YBX3P16989 NUB1-210ENST00000493588 867 ntTSL 319.47■□□□□ 0.717e-8■□□□□ 8.2
YBX3P16989 PLCXD1-205ENST00000429181 469 ntTSL 419.41■□□□□ 0.77e-8■□□□□ 8.2
YBX3P16989 SEC23A-204ENST00000548032 907 ntTSL 2 BASIC19.13■□□□□ 0.657e-8■□□□□ 8.2
YBX3P16989 SEC23A-212ENST00000556092 571 ntTSL 419.13■□□□□ 0.657e-8■□□□□ 8.2
YBX3P16989 PLCXD1-207ENST00000443019 284 ntTSL 519.04■□□□□ 0.647e-8■□□□□ 8.2
YBX3P16989 ERCC2-211ENST00000588652 2405 ntTSL 218.7■□□□□ 0.587e-8■□□□□ 8.2
YBX3P16989 PLCXD1-210ENST00000448477 828 ntTSL 218.47■□□□□ 0.557e-8■□□□□ 8.2
YBX3P16989 H3F3B-213ENST00000593254 894 ntTSL 518.42■□□□□ 0.545e-17■□□□□ 8.2
YBX3P16989 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC18.21■□□□□ 0.514e-9■□□□□ 8.2
YBX3P16989 ERCC2-201ENST00000391941 2871 ntTSL 1 (best)18.16■□□□□ 0.57e-8■□□□□ 8.2
YBX3P16989 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC17.95■□□□□ 0.464e-9■□□□□ 8.2
YBX3P16989 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC17.93■□□□□ 0.464e-9■□□□□ 8.2
YBX3P16989 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC17.2■□□□□ 0.347e-8■□□□□ 8.2
YBX3P16989 SYS1-DBNDD2-202ENST00000452133 674 ntAPPRIS ALT2 TSL 3 BASIC16.7■□□□□ 0.267e-8■□□□□ 8.2
YBX3P16989 H3F3B-212ENST00000592643 795 ntTSL 3 BASIC15.34■□□□□ 0.055e-17■□□□□ 8.2
YBX3P16989 PARVB-201ENST00000338758 5429 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.064e-9■□□□□ 8.2
YBX3P16989 NUB1-203ENST00000468404 1703 ntTSL 514.61□□□□□ -0.077e-8■□□□□ 8.2
YBX3P16989 H3F3B-210ENST00000591890 783 ntTSL 3 BASIC14.39□□□□□ -0.115e-17■□□□□ 8.2
YBX3P16989 RTF1-201ENST00000389629 5021 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.117e-8■□□□□ 8.2
YBX3P16989 KDM1A-205ENST00000494920 905 ntTSL 313.88□□□□□ -0.194e-9■□□□□ 8.2
YBX3P16989 ERCC2-204ENST00000391945 4153 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.227e-8■□□□□ 8.2
YBX3P16989 SEC23A-201ENST00000307712 4135 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.227e-8■□□□□ 8.2
YBX3P16989 H3F3B-201ENST00000254810 2705 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.245e-17■□□□□ 8.2
YBX3P16989 PARVB-206ENST00000477438 421 ntTSL 513.31□□□□□ -0.284e-9■□□□□ 8.2
YBX3P16989 PLCXD1-201ENST00000381657 5507 ntAPPRIS P2 TSL 5 BASIC12.66□□□□□ -0.387e-8■□□□□ 8.2
YBX3P16989 PLCXD1-203ENST00000399012 5287 ntAPPRIS P2 TSL 5 BASIC12.19□□□□□ -0.467e-8■□□□□ 8.2
YBX3P16989 NUB1-211ENST00000497987 861 ntTSL 211.92□□□□□ -0.57e-8■□□□□ 8.2
YBX3P16989 RTF1-206ENST00000560447 551 ntTSL 310.21□□□□□ -0.777e-8■□□□□ 8.2
YBX3P16989 RTF1-204ENST00000558117 552 ntTSL 48.7□□□□□ -1.027e-8■□□□□ 8.2
YBX3P16989 KDM1A-206ENST00000602503 2810 nt7.94□□□□□ -1.144e-9■□□□□ 8.2
YBX3P16989 NUB1-208ENST00000480907 977 ntTSL 57.92□□□□□ -1.147e-8■□□□□ 8.2
YBX3P16989 SEC23A-210ENST00000555425 547 ntTSL 56.59□□□□□ -1.357e-8■□□□□ 8.2
YBX3P16989 NUB1-205ENST00000470316 1752 ntTSL 56.59□□□□□ -1.357e-8■□□□□ 8.2
YBX3P16989 SEC23A-215ENST00000625395 261 ntTSL 5 BASIC6.48□□□□□ -1.377e-8■□□□□ 8.2
YBX3P16989 SEC23A-208ENST00000555017 588 ntTSL 44.1□□□□□ -1.757e-8■□□□□ 8.2
YBX3P16989 MICAL2-228ENST00000533219 752 ntTSL 317.27■□□□□ 0.363e-6■□□□□ 8.2
YBX3P16989 MICAL2-221ENST00000530691 6307 ntTSL 1 (best)9.65□□□□□ -0.873e-6■□□□□ 8.2
YBX3P16989 RETSAT-203ENST00000429806 2335 ntTSL 1 (best)12.71□□□□□ -0.382e-6■□□□□ 8.2
YBX3P16989 RETSAT-201ENST00000295802 3100 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.732e-6■□□□□ 8.2
YBX3P16989 PREB-203ENST00000416802 564 ntTSL 431.83■■■□□ 2.697e-8■□□□□ 8.2
YBX3P16989 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC25.64■■□□□ 1.77e-8■□□□□ 8.2
YBX3P16989 CSNK1E-207ENST00000430335 996 ntTSL 525.47■■□□□ 1.677e-8■□□□□ 8.2
YBX3P16989 GTPBP4-201ENST00000360059 756 ntTSL 525.08■■□□□ 1.613e-6■□□□□ 8.2
YBX3P16989 PREB-209ENST00000474802 1283 ntTSL 524.92■■□□□ 1.587e-8■□□□□ 8.2
YBX3P16989 CHCHD6-202ENST00000503119 1148 ntTSL 1 (best)24.92■■□□□ 1.587e-8■□□□□ 8.2
YBX3P16989 PREB-202ENST00000406567 1910 ntTSL 5 BASIC24.62■■□□□ 1.537e-8■□□□□ 8.2
YBX3P16989 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.397e-8■□□□□ 8.2
YBX3P16989 PREB-206ENST00000444452 2030 ntTSL 1 (best)23.54■■□□□ 1.367e-8■□□□□ 8.2
YBX3P16989 DMGDH-205ENST00000520388 661 ntTSL 423.36■■□□□ 1.334e-9■□□□□ 8.2
YBX3P16989 UNC45A-204ENST00000471780 1730 ntTSL 522.82■■□□□ 1.247e-8■□□□□ 8.2
YBX3P16989 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC21.86■■□□□ 1.099e-12■□□□□ 8.2
YBX3P16989 EIF4G2-210ENST00000527419 571 ntTSL 521.55■■□□□ 1.044e-9■□□□□ 8.2
YBX3P16989 DDX41-214ENST00000512334 686 ntTSL 220.64■□□□□ 0.897e-8■□□□□ 8.2
YBX3P16989 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC19.82■□□□□ 0.769e-12■□□□□ 8.2
YBX3P16989 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC19.55■□□□□ 0.727e-8■□□□□ 8.2
YBX3P16989 PREB-208ENST00000468045 3057 ntTSL 217.96■□□□□ 0.477e-8■□□□□ 8.2
YBX3P16989 SDHA-215ENST00000512962 935 ntTSL 317.85■□□□□ 0.457e-8■□□□□ 8.2
YBX3P16989 SDHA-218ENST00000515752 1809 ntTSL 516.61■□□□□ 0.257e-8■□□□□ 8.2
YBX3P16989 DMGDH-204ENST00000518707 455 ntTSL 216.02■□□□□ 0.164e-9■□□□□ 8.2
YBX3P16989 MFSD14B-201ENST00000375344 3420 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.117e-8■□□□□ 8.2
YBX3P16989 GDA-203ENST00000376986 1771 ntTSL 2 BASIC15.26■□□□□ 0.037e-8■□□□□ 8.2
YBX3P16989 NASP-205ENST00000437901 874 ntTSL 515.11■□□□□ 0.014e-9■□□□□ 8.2
YBX3P16989 UNC45A-207ENST00000487875 2641 ntTSL 214.99□□□□□ -0.017e-8■□□□□ 8.2
YBX3P16989 NASP-212ENST00000527359 743 ntTSL 314.83□□□□□ -0.044e-9■□□□□ 8.2
YBX3P16989 NASP-204ENST00000437362 999 ntTSL 214.79□□□□□ -0.044e-9■□□□□ 8.2
YBX3P16989 EIF4G2-219ENST00000531507 591 ntTSL 514.41□□□□□ -0.14e-9■□□□□ 8.2
YBX3P16989 PPIP5K2-216ENST00000613907 1070 ntTSL 514.25□□□□□ -0.137e-8■□□□□ 8.2
YBX3P16989 AL513165.2-202ENST00000541804 1514 ntTSL 1 (best)14.23□□□□□ -0.137e-8■□□□□ 8.2
YBX3P16989 EIF4G2-226ENST00000532570 573 ntTSL 514.02□□□□□ -0.174e-9■□□□□ 8.2
YBX3P16989 GDA-208ENST00000489618 888 ntTSL 314□□□□□ -0.177e-8■□□□□ 8.2
YBX3P16989 UQCRFS1-201ENST00000304863 3475 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.27e-8■□□□□ 8.2
YBX3P16989 GTPBP4-202ENST00000360803 5075 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.263e-6■□□□□ 8.2
YBX3P16989 NASP-216ENST00000528238 894 ntAPPRIS ALT2 TSL 513.35□□□□□ -0.274e-9■□□□□ 8.2
YBX3P16989 GTF3C2-207ENST00000457098 762 ntTSL 313.14□□□□□ -0.317e-8■□□□□ 8.2
YBX3P16989 GDA-206ENST00000475764 2019 ntTSL 1 (best)12.95□□□□□ -0.347e-8■□□□□ 8.2
YBX3P16989 UNC45A-202ENST00000418476 3252 ntAPPRIS P3 TSL 1 (best) BASIC12.21□□□□□ -0.467e-8■□□□□ 8.2
YBX3P16989 PPIP5K2-212ENST00000511022 765 ntTSL 511.83□□□□□ -0.527e-8■□□□□ 8.2
YBX3P16989 PPIP5K2-213ENST00000511724 1063 ntTSL 511.83□□□□□ -0.527e-8■□□□□ 8.2
YBX3P16989 AL513165.2-201ENST00000544475 2999 ntTSL 1 (best)11.52□□□□□ -0.577e-8■□□□□ 8.2
YBX3P16989 GDA-202ENST00000358399 5340 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.577e-8■□□□□ 8.2
YBX3P16989 UNC45A-201ENST00000394275 4002 ntAPPRIS ALT2 TSL 1 (best) BASIC11.42□□□□□ -0.587e-8■□□□□ 8.2
YBX3P16989 SMAP2-204ENST00000487871 362 ntTSL 311.27□□□□□ -0.612e-14■□□□□ 8.2
YBX3P16989 SDHA-214ENST00000511810 3001 ntTSL 210.9□□□□□ -0.667e-8■□□□□ 8.2
YBX3P16989 NASP-206ENST00000453748 2080 ntTSL 210.67□□□□□ -0.74e-9■□□□□ 8.2
YBX3P16989 EIF4G2-206ENST00000525972 584 ntTSL 210.23□□□□□ -0.774e-9■□□□□ 8.2
YBX3P16989 GTPBP4-205ENST00000491635 2220 ntTSL 210.01□□□□□ -0.813e-6■□□□□ 8.2
YBX3P16989 GDA-205ENST00000436438 990 ntTSL 39.36□□□□□ -0.917e-8■□□□□ 8.2
YBX3P16989 NASP-214ENST00000527932 650 ntTSL 39.3□□□□□ -0.924e-9■□□□□ 8.2
YBX3P16989 EIF4G2-212ENST00000528562 601 ntTSL 49.23□□□□□ -0.934e-9■□□□□ 8.2
YBX3P16989 GDA-209ENST00000545168 5362 ntTSL 2 BASIC7.58□□□□□ -1.27e-8■□□□□ 8.2
YBX3P16989 EIF4G2-223ENST00000532152 587 ntTSL 26.6□□□□□ -1.354e-9■□□□□ 8.2
YBX3P16989 RNY3P1-201ENST00000365085 102 ntBASIC6.44□□□□□ -1.384e-9■□□□□ 8.2
YBX3P16989 SQLE-202ENST00000518604 743 ntTSL 26.27□□□□□ -1.419e-12■□□□□ 8.2
YBX3P16989 PPIP5K2-210ENST00000509597 2799 ntTSL 22.96□□□□□ -1.947e-8■□□□□ 8.2
YBX3P16989 EIF4G2-231ENST00000534605 198 ntTSL 31.23□□□□□ -2.214e-9■□□□□ 8.2
YBX3P16989 PKP4-208ENST00000462335 561 ntTSL 412.15□□□□□ -0.463e-8■□□□□ 8.2
YBX3P16989 RPL23A-206ENST00000496182 636 ntTSL 3 BASIC18.96■□□□□ 0.636e-11■□□□□ 8.2
YBX3P16989 RPL23A-205ENST00000472628 639 ntTSL 1 (best) BASIC14.23□□□□□ -0.136e-11■□□□□ 8.2
YBX3P16989 RPL23A-204ENST00000422514 1562 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.276e-11■□□□□ 8.2
Retrieved 100 of 29,075 protein–RNA pairs in 744.6 ms