RNA–Protein interactions for RNA: ENST00000307712.10

SEC23A-201, Transcript of Sec23 homolog A, coat complex II component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SEC23A, Length 4,135 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEC23A-201ENST00000307712 NISCHQ9Y2I1 1504 aa24.16■■□□□ 1.46
SEC23A-201ENST00000307712 SUPT5HO00267 1087 aaKnown RBP22.77■■□□□ 1.24
SEC23A-201ENST00000307712 SHROOM4Q9ULL8 1493 aa22.61■■□□□ 1.21
SEC23A-201ENST00000307712 DCAF8L2P0C7V8 631 aa22.57■■□□□ 1.2
SEC23A-201ENST00000307712 PCGF6Q9BYE7 350 aa22.02■■□□□ 1.12
SEC23A-201ENST00000307712 HRCP23327 699 aa21.69■■□□□ 1.06
SEC23A-201ENST00000307712 EHMT2Q96KQ7 1210 aa21.54■■□□□ 1.04
SEC23A-201ENST00000307712 PPARGC1BQ86YN6 1023 aaKnown RBP21.42■■□□□ 1.02
SEC23A-201ENST00000307712 CHIC1Q5VXU3 224 aa21.39■■□□□ 1.01
SEC23A-201ENST00000307712 FAM9AQ8IZU1 332 aaPredicted RBP21.28■■□□□ 1
SEC23A-201ENST00000307712 LOC105371045A0A1W2PR82 267 aa21.2■□□□□ 0.98
SEC23A-201ENST00000307712 ZEB1P37275 1124 aaPredicted RBP21.1■□□□□ 0.97
SEC23A-201ENST00000307712 TRIM26Q12899 539 aaPredicted RBP21.08■□□□□ 0.97
SEC23A-201ENST00000307712 PELP1Q8IZL8 1130 aaKnown RBP21.06■□□□□ 0.96
SEC23A-201ENST00000307712 TRIM41Q8WV44 630 aa20.97■□□□□ 0.95
SEC23A-201ENST00000307712 TTBK1Q5TCY1 1321 aaPredicted RBP20.91■□□□□ 0.94
SEC23A-201ENST00000307712 CCER1Q8TC90 406 aaPredicted RBP20.83■□□□□ 0.92
SEC23A-201ENST00000307712 CENPBP07199 599 aaPredicted RBP20.75■□□□□ 0.91
SEC23A-201ENST00000307712 MYO15BQ96JP2 1530 aa20.62■□□□□ 0.89
SEC23A-201ENST00000307712 YTHDC1Q96MU7 727 aaKnown RBP20.51■□□□□ 0.87
SEC23A-201ENST00000307712 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.45■□□□□ 0.86
SEC23A-201ENST00000307712 DCAF1Q9Y4B6 1507 aa20.37■□□□□ 0.85
SEC23A-201ENST00000307712 APLP2Q06481 763 aa20.35■□□□□ 0.85
SEC23A-201ENST00000307712 MYT1Q01538 1121 aa20.32■□□□□ 0.84
SEC23A-201ENST00000307712 DIEXFQ68CQ4 756 aaKnown RBP20.29■□□□□ 0.84
SEC23A-201ENST00000307712 ZCCHC6Q5VYS8 1495 aaKnown RBP20.29■□□□□ 0.84
SEC23A-201ENST00000307712 UBTFP17480 764 aaKnown RBP20.28■□□□□ 0.84
SEC23A-201ENST00000307712 GTF3C3Q9Y5Q9 886 aa20.24■□□□□ 0.83
SEC23A-201ENST00000307712 RANGAP1P46060 587 aaPredicted RBP20.24■□□□□ 0.83
SEC23A-201ENST00000307712 SCAF1Q9H7N4 1312 aaKnown RBP20.23■□□□□ 0.83
SEC23A-201ENST00000307712 ACIN1Q9UKV3 1341 aaKnown RBP20.16■□□□□ 0.82
SEC23A-201ENST00000307712 HNRNPUL2Q1KMD3 747 aaKnown RBP20.04■□□□□ 0.8
SEC23A-201ENST00000307712 NEUROD1Q13562 356 aa20.02■□□□□ 0.8
SEC23A-201ENST00000307712 ZNF316A6NFI3 1004 aaPredicted RBP19.84■□□□□ 0.77
SEC23A-201ENST00000307712 CCDC180Q9P1Z9 1646 aa19.82■□□□□ 0.76
SEC23A-201ENST00000307712 NEFLP07196 543 aa19.67■□□□□ 0.74
SEC23A-201ENST00000307712 ITGAEP38570 1179 aa19.67■□□□□ 0.74
SEC23A-201ENST00000307712 ERICH6Q7L0X2 663 aa19.6■□□□□ 0.73
SEC23A-201ENST00000307712 ATP1B4Q9UN42 357 aaPredicted RBP19.58■□□□□ 0.72
SEC23A-201ENST00000307712 RSF1Q96T23 1441 aaPredicted RBP19.57■□□□□ 0.72
SEC23A-201ENST00000307712 MIER1Q8N108 512 aa19.52■□□□□ 0.72
SEC23A-201ENST00000307712 CSRNP3Q8WYN3 585 aa19.52■□□□□ 0.71
SEC23A-201ENST00000307712 SCRIBQ14160 1630 aa19.52■□□□□ 0.71
SEC23A-201ENST00000307712 BCANQ96GW7 911 aa19.49■□□□□ 0.71
SEC23A-201ENST00000307712 ABCC9O60706 1549 aa19.42■□□□□ 0.7
SEC23A-201ENST00000307712 CEP162Q5TB80 1403 aa19.24■□□□□ 0.67
SEC23A-201ENST00000307712 PABPN1Q86U42 306 aaKnown RBP eCLIP19.22■□□□□ 0.67
SEC23A-201ENST00000307712 RB1CC1Q8TDY2 1594 aa19.19■□□□□ 0.66
SEC23A-201ENST00000307712 FAM50AQ14320 339 aaKnown RBP19.15■□□□□ 0.66
SEC23A-201ENST00000307712 FKBP8Q14318 412 aa19.14■□□□□ 0.65
SEC23A-201ENST00000307712 CLSPNQ9HAW4 1339 aa19.13■□□□□ 0.65
SEC23A-201ENST00000307712 CECR2Q9BXF3 1484 aa19.1■□□□□ 0.65
SEC23A-201ENST00000307712 ANP32CO43423 234 aa19.06■□□□□ 0.64
SEC23A-201ENST00000307712 TNIKQ9UKE5 1360 aa19.06■□□□□ 0.64
SEC23A-201ENST00000307712 CNGB1Q14028 1251 aaPredicted RBP19.06■□□□□ 0.64
SEC23A-201ENST00000307712 DDX10Q13206 875 aaKnown RBP19.05■□□□□ 0.64
SEC23A-201ENST00000307712 CLIP1P30622 1438 aa19.01■□□□□ 0.63
SEC23A-201ENST00000307712 SUPT16HQ9Y5B9 1047 aaKnown RBP19■□□□□ 0.63
SEC23A-201ENST00000307712 SOGA1O94964 1423 aa18.97■□□□□ 0.63
SEC23A-201ENST00000307712 TRIM52Q96A61 297 aa18.96■□□□□ 0.63
SEC23A-201ENST00000307712 POLR3GLQ9BT43 218 aa18.95■□□□□ 0.62
SEC23A-201ENST00000307712 CDK11AQ9UQ88 783 aaPredicted RBP18.94■□□□□ 0.62
SEC23A-201ENST00000307712 GOLGA3Q08378 1498 aa18.93■□□□□ 0.62
SEC23A-201ENST00000307712 ANP32EQ9BTT0 268 aa18.92■□□□□ 0.62
SEC23A-201ENST00000307712 MROH2BQ7Z745 1585 aa18.9■□□□□ 0.62
SEC23A-201ENST00000307712 EEA1Q15075 1411 aa18.9■□□□□ 0.62
SEC23A-201ENST00000307712 HIRIP3Q9BW71 556 aaPredicted RBP18.89■□□□□ 0.62
SEC23A-201ENST00000307712 CCDC88BA6NC98 1476 aa18.87■□□□□ 0.61
SEC23A-201ENST00000307712 P3H3Q8IVL6 736 aa18.86■□□□□ 0.61
SEC23A-201ENST00000307712 ABCC8Q09428 1581 aa18.82■□□□□ 0.6
SEC23A-201ENST00000307712 HNRNPUQ00839 825 aaKnown RBP eCLIP18.79■□□□□ 0.6
SEC23A-201ENST00000307712 WRNQ14191 1432 aaPredicted RBP eCLIP18.78■□□□□ 0.6
SEC23A-201ENST00000307712 IRX6P78412 446 aaPredicted RBP18.76■□□□□ 0.59
SEC23A-201ENST00000307712 TSHZ2Q9NRE2 1034 aa18.75■□□□□ 0.59
SEC23A-201ENST00000307712 RTL5Q5HYW3 569 aaPredicted RBP18.75■□□□□ 0.59
SEC23A-201ENST00000307712 CEP164Q9UPV0 1460 aa18.73■□□□□ 0.59
SEC23A-201ENST00000307712 WIZO95785 1651 aa18.69■□□□□ 0.58
SEC23A-201ENST00000307712 TONSLQ96HA7 1378 aa18.67■□□□□ 0.58
SEC23A-201ENST00000307712 SIN3AQ96ST3 1273 aa18.66■□□□□ 0.58
SEC23A-201ENST00000307712 BAZ1AQ9NRL2 1556 aaPredicted RBP18.66■□□□□ 0.58
SEC23A-201ENST00000307712 VPS8Q8N3P4 1428 aa18.64■□□□□ 0.57
SEC23A-201ENST00000307712 BCL11AQ9H165 835 aa18.64■□□□□ 0.57
SEC23A-201ENST00000307712 RUSC2Q8N2Y8 1516 aa18.63■□□□□ 0.57
SEC23A-201ENST00000307712 NACADO15069 1562 aa18.63■□□□□ 0.57
SEC23A-201ENST00000307712 KANK4Q5T7N3 995 aaPredicted RBP18.62■□□□□ 0.57
SEC23A-201ENST00000307712 KCNH8Q96L42 1107 aa18.62■□□□□ 0.57
SEC23A-201ENST00000307712 FAM9BQ8IZU0 186 aa18.61■□□□□ 0.57
SEC23A-201ENST00000307712 RBM19Q9Y4C8 960 aaKnown RBP18.59■□□□□ 0.57
SEC23A-201ENST00000307712 DAXXQ9UER7 740 aaPredicted RBP18.57■□□□□ 0.56
SEC23A-201ENST00000307712 ZNF326Q5BKZ1 582 aaKnown RBP18.56■□□□□ 0.56
SEC23A-201ENST00000307712 NBR1Q14596 966 aa18.54■□□□□ 0.56
SEC23A-201ENST00000307712 CCNB3Q8WWL7 1395 aa18.51■□□□□ 0.55
SEC23A-201ENST00000307712 ANP32AP39687 249 aaKnown RBP18.5■□□□□ 0.55
SEC23A-201ENST00000307712 DHX57Q6P158 1386 aaKnown RBP18.5■□□□□ 0.55
SEC23A-201ENST00000307712 ARID3CA6NKF2 412 aa18.47■□□□□ 0.55
SEC23A-201ENST00000307712 NPM2Q86SE8 214 aaKnown RBP18.47■□□□□ 0.55
SEC23A-201ENST00000307712 MRS2Q9HD23 443 aa18.46■□□□□ 0.55
SEC23A-201ENST00000307712 CHIC2Q9UKJ5 165 aa18.45■□□□□ 0.54
SEC23A-201ENST00000307712 TOP2AP11388 1531 aaKnown RBP18.39■□□□□ 0.53
SEC23A-201ENST00000307712 CCDC136Q96JN2 1154 aa18.39■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms