RNA–Protein interactions for RNA: ENST00000588652.5

ERCC2-211, Transcript of ERCC excision repair 2, TFIIH core complex helicase subunit, humanhuman

TSL 2

Gene ERCC2, Length 2,405 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC2-211ENST00000588652 NISCHQ9Y2I1 1504 aa37.87■■■■□ 3.65
ERCC2-211ENST00000588652 CCDC180Q9P1Z9 1646 aa32.59■■■□□ 2.81
ERCC2-211ENST00000588652 ZCCHC6Q5VYS8 1495 aaKnown RBP31.95■■■□□ 2.71
ERCC2-211ENST00000588652 SHROOM4Q9ULL8 1493 aa31.6■■■□□ 2.65
ERCC2-211ENST00000588652 DCAF8L2P0C7V8 631 aa31.23■■■□□ 2.59
ERCC2-211ENST00000588652 DCAF1Q9Y4B6 1507 aa31.22■■■□□ 2.59
ERCC2-211ENST00000588652 SUPT5HO00267 1087 aaKnown RBP30.74■■■□□ 2.51
ERCC2-211ENST00000588652 MYO15BQ96JP2 1530 aa30.55■■■□□ 2.48
ERCC2-211ENST00000588652 ABCC9O60706 1549 aa30.36■■■□□ 2.45
ERCC2-211ENST00000588652 SCRIBQ14160 1630 aa30.23■■■□□ 2.43
ERCC2-211ENST00000588652 NACADO15069 1562 aa30.21■■■□□ 2.43
ERCC2-211ENST00000588652 RB1CC1Q8TDY2 1594 aa29.8■■■□□ 2.36
ERCC2-211ENST00000588652 CHIC1Q5VXU3 224 aa29.75■■■□□ 2.35
ERCC2-211ENST00000588652 RSF1Q96T23 1441 aaPredicted RBP29.7■■■□□ 2.35
ERCC2-211ENST00000588652 CECR2Q9BXF3 1484 aa29.46■■■□□ 2.31
ERCC2-211ENST00000588652 MROH2BQ7Z745 1585 aa29.35■■■□□ 2.29
ERCC2-211ENST00000588652 UNC13AQ9UPW8 1703 aa29.34■■■□□ 2.29
ERCC2-211ENST00000588652 WIZO95785 1651 aa29.17■■■□□ 2.26
ERCC2-211ENST00000588652 BAZ1AQ9NRL2 1556 aaPredicted RBP29.16■■■□□ 2.26
ERCC2-211ENST00000588652 BICRAQ9NZM4 1560 aa28.97■■■□□ 2.23
ERCC2-211ENST00000588652 SMARCA4P51532 1647 aa28.97■■■□□ 2.23
ERCC2-211ENST00000588652 PABPN1Q86U42 306 aaKnown RBP eCLIP28.83■■■□□ 2.21
ERCC2-211ENST00000588652 TOP2AP11388 1531 aaKnown RBP28.78■■■□□ 2.2
ERCC2-211ENST00000588652 TRIM41Q8WV44 630 aa28.78■■■□□ 2.2
ERCC2-211ENST00000588652 LOC105371045A0A1W2PR82 267 aa28.73■■■□□ 2.19
ERCC2-211ENST00000588652 EIF4G1Q04637 1599 aaKnown RBP28.63■■■□□ 2.17
ERCC2-211ENST00000588652 SMARCA2P51531 1590 aa28.58■■■□□ 2.17
ERCC2-211ENST00000588652 CCDC88BA6NC98 1476 aa28.57■■■□□ 2.16
ERCC2-211ENST00000588652 PEG3Q9GZU2 1588 aa28.53■■■□□ 2.16
ERCC2-211ENST00000588652 HRCP23327 699 aa28.48■■■□□ 2.15
ERCC2-211ENST00000588652 PCGF6Q9BYE7 350 aa28.42■■■□□ 2.14
ERCC2-211ENST00000588652 FAM9AQ8IZU1 332 aaPredicted RBP28.38■■■□□ 2.13
ERCC2-211ENST00000588652 ATAD2BQ9ULI0 1458 aa28.32■■■□□ 2.12
ERCC2-211ENST00000588652 ABCC8Q09428 1581 aa28.27■■■□□ 2.12
ERCC2-211ENST00000588652 BAZ1BQ9UIG0 1483 aaKnown RBP28.2■■■□□ 2.1
ERCC2-211ENST00000588652 EHMT2Q96KQ7 1210 aa28.03■■■□□ 2.08
ERCC2-211ENST00000588652 TRIM26Q12899 539 aaPredicted RBP27.97■■■□□ 2.07
ERCC2-211ENST00000588652 WRNQ14191 1432 aaPredicted RBP eCLIP27.92■■■□□ 2.06
ERCC2-211ENST00000588652 NCAPD3P42695 1498 aa27.91■■■□□ 2.06
ERCC2-211ENST00000588652 HMGXB3Q12766 1538 aa27.91■■■□□ 2.06
ERCC2-211ENST00000588652 SOGA1O94964 1423 aa27.88■■■□□ 2.05
ERCC2-211ENST00000588652 EEA1Q15075 1411 aa27.82■■■□□ 2.04
ERCC2-211ENST00000588652 PPARGC1BQ86YN6 1023 aaKnown RBP27.81■■■□□ 2.04
ERCC2-211ENST00000588652 SYNJ1O43426 1573 aa27.81■■■□□ 2.04
ERCC2-211ENST00000588652 RUSC2Q8N2Y8 1516 aa27.76■■■□□ 2.03
ERCC2-211ENST00000588652 CSRNP3Q8WYN3 585 aa27.7■■■□□ 2.03
ERCC2-211ENST00000588652 TOP2BQ02880 1626 aa27.59■■■□□ 2.01
ERCC2-211ENST00000588652 TNIKQ9UKE5 1360 aa27.58■■■□□ 2.01
ERCC2-211ENST00000588652 CEP162Q5TB80 1403 aa27.54■■■□□ 2
ERCC2-211ENST00000588652 BIVM-ERCC5R4GMW8 1640 aa27.53■■■□□ 2
ERCC2-211ENST00000588652 GOLGA3Q08378 1498 aa27.53■■■□□ 2
ERCC2-211ENST00000588652 CFTRP13569 1480 aa27.52■■■□□ 2
ERCC2-211ENST00000588652 KIF21BO75037 1637 aa27.46■■□□□ 1.99
ERCC2-211ENST00000588652 UBTFP17480 764 aaKnown RBP27.46■■□□□ 1.99
ERCC2-211ENST00000588652 CEP164Q9UPV0 1460 aa27.45■■□□□ 1.98
ERCC2-211ENST00000588652 CC2D2AQ9P2K1 1620 aa27.45■■□□□ 1.98
ERCC2-211ENST00000588652 PRDM2Q13029 1718 aa27.39■■□□□ 1.97
ERCC2-211ENST00000588652 CUX1P39880 1505 aa27.38■■□□□ 1.97
ERCC2-211ENST00000588652 ZEB1P37275 1124 aaPredicted RBP27.36■■□□□ 1.97
ERCC2-211ENST00000588652 CADPSQ9ULU8 1353 aa27.28■■□□□ 1.96
ERCC2-211ENST00000588652 RAPGEF2Q9Y4G8 1499 aa27.26■■□□□ 1.95
ERCC2-211ENST00000588652 CLIP1P30622 1438 aa27.15■■□□□ 1.94
ERCC2-211ENST00000588652 PRXQ9BXM0 1461 aa27.14■■□□□ 1.93
ERCC2-211ENST00000588652 ERICH3Q5RHP9 1530 aa27.13■■□□□ 1.93
ERCC2-211ENST00000588652 KIF27Q86VH2 1401 aa27.12■■□□□ 1.93
ERCC2-211ENST00000588652 TTBK1Q5TCY1 1321 aaPredicted RBP27.01■■□□□ 1.91
ERCC2-211ENST00000588652 FANCD2Q9BXW9 1451 aa27■■□□□ 1.91
ERCC2-211ENST00000588652 VPS8Q8N3P4 1428 aa27■■□□□ 1.91
ERCC2-211ENST00000588652 FGD5Q6ZNL6 1462 aa26.96■■□□□ 1.91
ERCC2-211ENST00000588652 CUX2O14529 1486 aa26.93■■□□□ 1.9
ERCC2-211ENST00000588652 NESP48681 1621 aa26.91■■□□□ 1.9
ERCC2-211ENST00000588652 RANGAP1P46060 587 aaPredicted RBP26.9■■□□□ 1.9
ERCC2-211ENST00000588652 IGF1RP08069 1367 aa26.85■■□□□ 1.89
ERCC2-211ENST00000588652 DNMBPQ6XZF7 1577 aa26.85■■□□□ 1.89
ERCC2-211ENST00000588652 LAMC3Q9Y6N6 1575 aa26.83■■□□□ 1.89
ERCC2-211ENST00000588652 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP26.8■■□□□ 1.88
ERCC2-211ENST00000588652 ARAP1Q96P48 1450 aa26.8■■□□□ 1.88
ERCC2-211ENST00000588652 TOPBP1Q92547 1522 aa26.79■■□□□ 1.88
ERCC2-211ENST00000588652 APLP2Q06481 763 aa26.76■■□□□ 1.87
ERCC2-211ENST00000588652 POLA1P09884 1462 aaPredicted RBP26.73■■□□□ 1.87
ERCC2-211ENST00000588652 CCER1Q8TC90 406 aaPredicted RBP26.73■■□□□ 1.87
ERCC2-211ENST00000588652 CARMIL1Q5VZK9 1371 aa26.72■■□□□ 1.87
ERCC2-211ENST00000588652 ABCA10Q8WWZ4 1543 aa26.7■■□□□ 1.86
ERCC2-211ENST00000588652 DNAJC5BQ9UF47 199 aa26.7■■□□□ 1.86
ERCC2-211ENST00000588652 RAD54L2Q9Y4B4 1467 aa26.7■■□□□ 1.86
ERCC2-211ENST00000588652 ARHGAP35Q9NRY4 1499 aa26.66■■□□□ 1.86
ERCC2-211ENST00000588652 URB2Q14146 1524 aaKnown RBP26.64■■□□□ 1.86
ERCC2-211ENST00000588652 PDS5BQ9NTI5 1447 aa26.62■■□□□ 1.85
ERCC2-211ENST00000588652 WDR97A6NE52 1622 aa26.55■■□□□ 1.84
ERCC2-211ENST00000588652 KIF21AQ7Z4S6 1674 aa26.54■■□□□ 1.84
ERCC2-211ENST00000588652 CUL7Q14999 1698 aa26.51■■□□□ 1.83
ERCC2-211ENST00000588652 KANK4Q5T7N3 995 aaPredicted RBP26.48■■□□□ 1.83
ERCC2-211ENST00000588652 HNRNPUL2Q1KMD3 747 aaKnown RBP26.47■■□□□ 1.83
ERCC2-211ENST00000588652 ABCA5Q8WWZ7 1642 aa26.43■■□□□ 1.82
ERCC2-211ENST00000588652 TDRD9Q8NDG6 1382 aaKnown RBP26.38■■□□□ 1.81
ERCC2-211ENST00000588652 CTTNBP2Q8WZ74 1663 aa26.36■■□□□ 1.81
ERCC2-211ENST00000588652 GAPVD1Q14C86 1478 aa26.36■■□□□ 1.81
ERCC2-211ENST00000588652 MAP3K1Q13233 1512 aa26.33■■□□□ 1.81
ERCC2-211ENST00000588652 TARBP1Q13395 1621 aaKnown RBP26.32■■□□□ 1.8
ERCC2-211ENST00000588652 TIAM1Q13009 1591 aa26.31■■□□□ 1.8
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms