RNA–Protein interactions for RNA: ENST00000545328.6

SEC23A-203, Transcript of Sec23 homolog A, coat complex II component, humanhuman

TSL 2 BASIC

Gene SEC23A, Length 2,734 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEC23A-203ENST00000545328 NISCHQ9Y2I1 1504 aa34.37■■■■□ 3.09
SEC23A-203ENST00000545328 SHROOM4Q9ULL8 1493 aa30.01■■■□□ 2.39
SEC23A-203ENST00000545328 SUPT5HO00267 1087 aaKnown RBP29.49■■■□□ 2.31
SEC23A-203ENST00000545328 DCAF8L2P0C7V8 631 aa29.11■■■□□ 2.25
SEC23A-203ENST00000545328 ZCCHC6Q5VYS8 1495 aaKnown RBP29.06■■■□□ 2.24
SEC23A-203ENST00000545328 CCDC180Q9P1Z9 1646 aa28.92■■■□□ 2.22
SEC23A-203ENST00000545328 CHIC1Q5VXU3 224 aa28.48■■■□□ 2.15
SEC23A-203ENST00000545328 MYO15BQ96JP2 1530 aa28.47■■■□□ 2.15
SEC23A-203ENST00000545328 PCGF6Q9BYE7 350 aa28■■■□□ 2.07
SEC23A-203ENST00000545328 DCAF1Q9Y4B6 1507 aa27.92■■■□□ 2.06
SEC23A-203ENST00000545328 LOC105371045A0A1W2PR82 267 aa27.88■■■□□ 2.05
SEC23A-203ENST00000545328 HRCP23327 699 aa27.88■■■□□ 2.05
SEC23A-203ENST00000545328 PPARGC1BQ86YN6 1023 aaKnown RBP27.61■■■□□ 2.01
SEC23A-203ENST00000545328 SCRIBQ14160 1630 aa27.57■■■□□ 2
SEC23A-203ENST00000545328 ABCC9O60706 1549 aa27.47■■□□□ 1.99
SEC23A-203ENST00000545328 RSF1Q96T23 1441 aaPredicted RBP27.35■■□□□ 1.97
SEC23A-203ENST00000545328 EHMT2Q96KQ7 1210 aa27.35■■□□□ 1.97
SEC23A-203ENST00000545328 FAM9AQ8IZU1 332 aaPredicted RBP27.34■■□□□ 1.97
SEC23A-203ENST00000545328 TRIM41Q8WV44 630 aa27.26■■□□□ 1.96
SEC23A-203ENST00000545328 RB1CC1Q8TDY2 1594 aa27.19■■□□□ 1.94
SEC23A-203ENST00000545328 TRIM26Q12899 539 aaPredicted RBP27.17■■□□□ 1.94
SEC23A-203ENST00000545328 CECR2Q9BXF3 1484 aa27.01■■□□□ 1.91
SEC23A-203ENST00000545328 MROH2BQ7Z745 1585 aa26.86■■□□□ 1.89
SEC23A-203ENST00000545328 NACADO15069 1562 aa26.78■■□□□ 1.88
SEC23A-203ENST00000545328 WIZO95785 1651 aa26.77■■□□□ 1.88
SEC23A-203ENST00000545328 ZEB1P37275 1124 aaPredicted RBP26.5■■□□□ 1.83
SEC23A-203ENST00000545328 TTBK1Q5TCY1 1321 aaPredicted RBP26.46■■□□□ 1.83
SEC23A-203ENST00000545328 BAZ1AQ9NRL2 1556 aaPredicted RBP26.41■■□□□ 1.82
SEC23A-203ENST00000545328 PELP1Q8IZL8 1130 aaKnown RBP26.37■■□□□ 1.81
SEC23A-203ENST00000545328 ABCC8Q09428 1581 aa26.34■■□□□ 1.81
SEC23A-203ENST00000545328 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP26.32■■□□□ 1.8
SEC23A-203ENST00000545328 EIF4G1Q04637 1599 aaKnown RBP26.23■■□□□ 1.79
SEC23A-203ENST00000545328 CCDC88BA6NC98 1476 aa26.22■■□□□ 1.79
SEC23A-203ENST00000545328 CCER1Q8TC90 406 aaPredicted RBP26.18■■□□□ 1.78
SEC23A-203ENST00000545328 PABPN1Q86U42 306 aaKnown RBP eCLIP26.18■■□□□ 1.78
SEC23A-203ENST00000545328 TOP2AP11388 1531 aaKnown RBP26.15■■□□□ 1.78
SEC23A-203ENST00000545328 SMARCA4P51532 1647 aa26.15■■□□□ 1.78
SEC23A-203ENST00000545328 SOGA1O94964 1423 aa26.1■■□□□ 1.77
SEC23A-203ENST00000545328 UNC13AQ9UPW8 1703 aa26.09■■□□□ 1.77
SEC23A-203ENST00000545328 SMARCA2P51531 1590 aa26.08■■□□□ 1.77
SEC23A-203ENST00000545328 UBTFP17480 764 aaKnown RBP26.04■■□□□ 1.76
SEC23A-203ENST00000545328 RUSC2Q8N2Y8 1516 aa26■■□□□ 1.75
SEC23A-203ENST00000545328 CEP162Q5TB80 1403 aa25.99■■□□□ 1.75
SEC23A-203ENST00000545328 SCAF1Q9H7N4 1312 aaKnown RBP25.92■■□□□ 1.74
SEC23A-203ENST00000545328 CSRNP3Q8WYN3 585 aa25.92■■□□□ 1.74
SEC23A-203ENST00000545328 TNIKQ9UKE5 1360 aa25.81■■□□□ 1.72
SEC23A-203ENST00000545328 RANGAP1P46060 587 aaPredicted RBP25.79■■□□□ 1.72
SEC23A-203ENST00000545328 WRNQ14191 1432 aaPredicted RBP eCLIP25.78■■□□□ 1.72
SEC23A-203ENST00000545328 BICRAQ9NZM4 1560 aa25.72■■□□□ 1.71
SEC23A-203ENST00000545328 DIEXFQ68CQ4 756 aaKnown RBP25.69■■□□□ 1.7
SEC23A-203ENST00000545328 GOLGA3Q08378 1498 aa25.66■■□□□ 1.7
SEC23A-203ENST00000545328 EEA1Q15075 1411 aa25.66■■□□□ 1.7
SEC23A-203ENST00000545328 HNRNPUL2Q1KMD3 747 aaKnown RBP25.65■■□□□ 1.7
SEC23A-203ENST00000545328 NEUROD1Q13562 356 aa25.6■■□□□ 1.69
SEC23A-203ENST00000545328 SYNJ1O43426 1573 aa25.6■■□□□ 1.69
SEC23A-203ENST00000545328 MYT1Q01538 1121 aa25.57■■□□□ 1.68
SEC23A-203ENST00000545328 ACIN1Q9UKV3 1341 aaKnown RBP25.52■■□□□ 1.68
SEC23A-203ENST00000545328 CLIP1P30622 1438 aa25.48■■□□□ 1.67
SEC23A-203ENST00000545328 BAZ1BQ9UIG0 1483 aaKnown RBP25.48■■□□□ 1.67
SEC23A-203ENST00000545328 ATAD2BQ9ULI0 1458 aa25.47■■□□□ 1.67
SEC23A-203ENST00000545328 CEP164Q9UPV0 1460 aa25.47■■□□□ 1.67
SEC23A-203ENST00000545328 PEG3Q9GZU2 1588 aa25.43■■□□□ 1.66
SEC23A-203ENST00000545328 APLP2Q06481 763 aa25.42■■□□□ 1.66
SEC23A-203ENST00000545328 RAPGEF2Q9Y4G8 1499 aa25.41■■□□□ 1.66
SEC23A-203ENST00000545328 YTHDC1Q96MU7 727 aaKnown RBP25.38■■□□□ 1.65
SEC23A-203ENST00000545328 ZNF316A6NFI3 1004 aaPredicted RBP25.37■■□□□ 1.65
SEC23A-203ENST00000545328 GTF3C3Q9Y5Q9 886 aa25.37■■□□□ 1.65
SEC23A-203ENST00000545328 KIF21BO75037 1637 aa25.34■■□□□ 1.65
SEC23A-203ENST00000545328 CENPBP07199 599 aaPredicted RBP25.34■■□□□ 1.65
SEC23A-203ENST00000545328 VPS8Q8N3P4 1428 aa25.3■■□□□ 1.64
SEC23A-203ENST00000545328 MIER1Q8N108 512 aa25.17■■□□□ 1.62
SEC23A-203ENST00000545328 TOP2BQ02880 1626 aa25.13■■□□□ 1.61
SEC23A-203ENST00000545328 KANK4Q5T7N3 995 aaPredicted RBP25.08■■□□□ 1.61
SEC23A-203ENST00000545328 ITGAEP38570 1179 aa25.01■■□□□ 1.59
SEC23A-203ENST00000545328 ARAP1Q96P48 1450 aa24.98■■□□□ 1.59
SEC23A-203ENST00000545328 BIVM-ERCC5R4GMW8 1640 aa24.98■■□□□ 1.59
SEC23A-203ENST00000545328 CUX1P39880 1505 aa24.96■■□□□ 1.59
SEC23A-203ENST00000545328 PRXQ9BXM0 1461 aa24.95■■□□□ 1.59
SEC23A-203ENST00000545328 KIF27Q86VH2 1401 aa24.88■■□□□ 1.57
SEC23A-203ENST00000545328 ERICH3Q5RHP9 1530 aa24.88■■□□□ 1.57
SEC23A-203ENST00000545328 DHX57Q6P158 1386 aaKnown RBP24.87■■□□□ 1.57
SEC23A-203ENST00000545328 NCAPD3P42695 1498 aa24.83■■□□□ 1.57
SEC23A-203ENST00000545328 HMGXB3Q12766 1538 aa24.79■■□□□ 1.56
SEC23A-203ENST00000545328 ARHGAP35Q9NRY4 1499 aa24.75■■□□□ 1.55
SEC23A-203ENST00000545328 CFTRP13569 1480 aa24.74■■□□□ 1.55
SEC23A-203ENST00000545328 CUX2O14529 1486 aa24.72■■□□□ 1.55
SEC23A-203ENST00000545328 ATP1B4Q9UN42 357 aaPredicted RBP24.71■■□□□ 1.55
SEC23A-203ENST00000545328 P3H3Q8IVL6 736 aa24.71■■□□□ 1.55
SEC23A-203ENST00000545328 CCNB3Q8WWL7 1395 aa24.69■■□□□ 1.54
SEC23A-203ENST00000545328 RRBP1Q9P2E9 1410 aaKnown RBP24.66■■□□□ 1.54
SEC23A-203ENST00000545328 CLSPNQ9HAW4 1339 aa24.63■■□□□ 1.53
SEC23A-203ENST00000545328 IGF1RP08069 1367 aa24.62■■□□□ 1.53
SEC23A-203ENST00000545328 FAM50AQ14320 339 aaKnown RBP24.58■■□□□ 1.53
SEC23A-203ENST00000545328 CARMIL1Q5VZK9 1371 aa24.56■■□□□ 1.52
SEC23A-203ENST00000545328 RAB3GAP2Q9H2M9 1393 aa24.55■■□□□ 1.52
SEC23A-203ENST00000545328 FGD5Q6ZNL6 1462 aa24.54■■□□□ 1.52
SEC23A-203ENST00000545328 CADPSQ9ULU8 1353 aa24.5■■□□□ 1.51
SEC23A-203ENST00000545328 SIN3AQ96ST3 1273 aa24.47■■□□□ 1.51
SEC23A-203ENST00000545328 PHLDB1Q86UU1 1377 aa24.46■■□□□ 1.51
SEC23A-203ENST00000545328 TIAM1Q13009 1591 aa24.45■■□□□ 1.51
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms