RNA–Protein interactions for RNA: ENST00000462335.1

PKP4-208, Transcript of plakophilin 4, humanhuman

TSL 4

Gene PKP4, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PKP4-208ENST00000462335 NISCHQ9Y2I1 1504 aa22.68■■□□□ 1.22
PKP4-208ENST00000462335 CCDC180Q9P1Z9 1646 aa20.12■□□□□ 0.81
PKP4-208ENST00000462335 ABCC9O60706 1549 aa19.75■□□□□ 0.75
PKP4-208ENST00000462335 DCAF8L2P0C7V8 631 aa19.28■□□□□ 0.68
PKP4-208ENST00000462335 RB1CC1Q8TDY2 1594 aa19■□□□□ 0.63
PKP4-208ENST00000462335 NACADO15069 1562 aa18.96■□□□□ 0.63
PKP4-208ENST00000462335 ZCCHC6Q5VYS8 1495 aaKnown RBP18.85■□□□□ 0.61
PKP4-208ENST00000462335 MYO15BQ96JP2 1530 aa18.77■□□□□ 0.6
PKP4-208ENST00000462335 DCAF1Q9Y4B6 1507 aa18.72■□□□□ 0.59
PKP4-208ENST00000462335 PABPN1Q86U42 306 aaKnown RBP eCLIP18.53■□□□□ 0.56
PKP4-208ENST00000462335 UNC13AQ9UPW8 1703 aa18.45■□□□□ 0.54
PKP4-208ENST00000462335 SCRIBQ14160 1630 aa18.43■□□□□ 0.54
PKP4-208ENST00000462335 BICRAQ9NZM4 1560 aa18.27■□□□□ 0.52
PKP4-208ENST00000462335 SHROOM4Q9ULL8 1493 aa18.14■□□□□ 0.5
PKP4-208ENST00000462335 DNAJC5BQ9UF47 199 aa18.01■□□□□ 0.47
PKP4-208ENST00000462335 EIF4G1Q04637 1599 aaKnown RBP17.87■□□□□ 0.45
PKP4-208ENST00000462335 CC2D2AQ9P2K1 1620 aa17.81■□□□□ 0.44
PKP4-208ENST00000462335 CECR2Q9BXF3 1484 aa17.74■□□□□ 0.43
PKP4-208ENST00000462335 BAZ1AQ9NRL2 1556 aaPredicted RBP17.62■□□□□ 0.41
PKP4-208ENST00000462335 SMARCA4P51532 1647 aa17.58■□□□□ 0.4
PKP4-208ENST00000462335 SMARCA2P51531 1590 aa17.52■□□□□ 0.39
PKP4-208ENST00000462335 ATAD2BQ9ULI0 1458 aa17.49■□□□□ 0.39
PKP4-208ENST00000462335 MROH2BQ7Z745 1585 aa17.46■□□□□ 0.39
PKP4-208ENST00000462335 NCAPD3P42695 1498 aa17.46■□□□□ 0.39
PKP4-208ENST00000462335 BAZ1BQ9UIG0 1483 aaKnown RBP17.42■□□□□ 0.38
PKP4-208ENST00000462335 HMGXB3Q12766 1538 aa17.36■□□□□ 0.37
PKP4-208ENST00000462335 PEG3Q9GZU2 1588 aa17.34■□□□□ 0.37
PKP4-208ENST00000462335 RSF1Q96T23 1441 aaPredicted RBP17.3■□□□□ 0.36
PKP4-208ENST00000462335 WIZO95785 1651 aa17.3■□□□□ 0.36
PKP4-208ENST00000462335 SUPT5HO00267 1087 aaKnown RBP17.15■□□□□ 0.34
PKP4-208ENST00000462335 ERCC6Q03468 1493 aa17.12■□□□□ 0.33
PKP4-208ENST00000462335 TOP2AP11388 1531 aaKnown RBP17.11■□□□□ 0.33
PKP4-208ENST00000462335 NESP48681 1621 aa17.04■□□□□ 0.32
PKP4-208ENST00000462335 CADPSQ9ULU8 1353 aa17.02■□□□□ 0.32
PKP4-208ENST00000462335 LAMC3Q9Y6N6 1575 aa17.02■□□□□ 0.32
PKP4-208ENST00000462335 PDS5BQ9NTI5 1447 aa17.01■□□□□ 0.31
PKP4-208ENST00000462335 CCDC88BA6NC98 1476 aa16.94■□□□□ 0.3
PKP4-208ENST00000462335 CFTRP13569 1480 aa16.86■□□□□ 0.29
PKP4-208ENST00000462335 KIF21AQ7Z4S6 1674 aa16.83■□□□□ 0.28
PKP4-208ENST00000462335 FANCD2Q9BXW9 1451 aa16.82■□□□□ 0.28
PKP4-208ENST00000462335 CEP164Q9UPV0 1460 aa16.82■□□□□ 0.28
PKP4-208ENST00000462335 CUX2O14529 1486 aa16.79■□□□□ 0.28
PKP4-208ENST00000462335 MRC2Q9UBG0 1479 aa16.75■□□□□ 0.27
PKP4-208ENST00000462335 PRDM2Q13029 1718 aa16.73■□□□□ 0.27
PKP4-208ENST00000462335 THOC2Q8NI27 1593 aaKnown RBP16.69■□□□□ 0.26
PKP4-208ENST00000462335 WDR62O43379 1518 aa16.62■□□□□ 0.25
PKP4-208ENST00000462335 ABCC8Q09428 1581 aa16.61■□□□□ 0.25
PKP4-208ENST00000462335 URB2Q14146 1524 aaKnown RBP16.58■□□□□ 0.24
PKP4-208ENST00000462335 TOPBP1Q92547 1522 aa16.53■□□□□ 0.24
PKP4-208ENST00000462335 DNMBPQ6XZF7 1577 aa16.51■□□□□ 0.23
PKP4-208ENST00000462335 IFT140Q96RY7 1462 aa16.45■□□□□ 0.22
PKP4-208ENST00000462335 SOGA1O94964 1423 aa16.42■□□□□ 0.22
PKP4-208ENST00000462335 CUX1P39880 1505 aa16.39■□□□□ 0.21
PKP4-208ENST00000462335 WRNQ14191 1432 aaPredicted RBP eCLIP16.38■□□□□ 0.21
PKP4-208ENST00000462335 POLA1P09884 1462 aaPredicted RBP16.37■□□□□ 0.21
PKP4-208ENST00000462335 FGD5Q6ZNL6 1462 aa16.37■□□□□ 0.21
PKP4-208ENST00000462335 RAD54L2Q9Y4B4 1467 aa16.34■□□□□ 0.21
PKP4-208ENST00000462335 ZNF608Q9ULD9 1512 aaPredicted RBP16.31■□□□□ 0.2
PKP4-208ENST00000462335 TDRD9Q8NDG6 1382 aaKnown RBP16.3■□□□□ 0.2
PKP4-208ENST00000462335 FBLN2P98095 1184 aa16.29■□□□□ 0.2
PKP4-208ENST00000462335 AQRO60306 1485 aaKnown RBP eCLIP16.29■□□□□ 0.21e-6■■□□□ 11.4
PKP4-208ENST00000462335 DNAJC5Q9H3Z4 198 aa16.28■□□□□ 0.2
PKP4-208ENST00000462335 TOP2BQ02880 1626 aa16.27■□□□□ 0.2
PKP4-208ENST00000462335 TARBP1Q13395 1621 aaKnown RBP16.27■□□□□ 0.2
PKP4-208ENST00000462335 OSCARQ8IYS5 282 aa16.25■□□□□ 0.19
PKP4-208ENST00000462335 SYNJ1O43426 1573 aa16.25■□□□□ 0.19
PKP4-208ENST00000462335 EIF4G3O43432 1585 aaKnown RBP16.25■□□□□ 0.19
PKP4-208ENST00000462335 BIVM-ERCC5R4GMW8 1640 aa16.24■□□□□ 0.19
PKP4-208ENST00000462335 CHMP7Q8WUX9 453 aaPredicted RBP16.21■□□□□ 0.19
PKP4-208ENST00000462335 TRIM41Q8WV44 630 aa16.2■□□□□ 0.18
PKP4-208ENST00000462335 WDR97A6NE52 1622 aa16.19■□□□□ 0.18
PKP4-208ENST00000462335 GAPVD1Q14C86 1478 aa16.19■□□□□ 0.18
PKP4-208ENST00000462335 ABCA10Q8WWZ4 1543 aa16.19■□□□□ 0.18
PKP4-208ENST00000462335 GRIN2BQ13224 1484 aa16.18■□□□□ 0.18
PKP4-208ENST00000462335 SNAPC4Q5SXM2 1469 aa16.12■□□□□ 0.17
PKP4-208ENST00000462335 MAGI1Q96QZ7 1491 aaPredicted RBP16.1■□□□□ 0.17
PKP4-208ENST00000462335 PBRM1Q86U86 1689 aa16.09■□□□□ 0.17
PKP4-208ENST00000462335 KIF27Q86VH2 1401 aa16.09■□□□□ 0.17
PKP4-208ENST00000462335 ABCA5Q8WWZ7 1642 aa16.07■□□□□ 0.16
PKP4-208ENST00000462335 CHD1O14646 1710 aa16.05■□□□□ 0.16
PKP4-208ENST00000462335 SYNJ2O15056 1496 aa16.04■□□□□ 0.16
PKP4-208ENST00000462335 ERICH3Q5RHP9 1530 aa16.01■□□□□ 0.15
PKP4-208ENST00000462335 AEBP2Q6ZN18 517 aaPredicted RBP16■□□□□ 0.15
PKP4-208ENST00000462335 FHAD1B1AJZ9 1412 aa16■□□□□ 0.15
PKP4-208ENST00000462335 IGF1RP08069 1367 aa15.95■□□□□ 0.14
PKP4-208ENST00000462335 ADAMTS12P58397 1594 aa15.93■□□□□ 0.14
PKP4-208ENST00000462335 GRIN2AQ12879 1464 aa15.93■□□□□ 0.14
PKP4-208ENST00000462335 CARMIL1Q5VZK9 1371 aa15.91■□□□□ 0.14
PKP4-208ENST00000462335 CHIC1Q5VXU3 224 aa15.91■□□□□ 0.14
PKP4-208ENST00000462335 CUL7Q14999 1698 aa15.89■□□□□ 0.13
PKP4-208ENST00000462335 FAM9AQ8IZU1 332 aaPredicted RBP15.88■□□□□ 0.13
PKP4-208ENST00000462335 CYB5RLQ6IPT4 315 aa15.86■□□□□ 0.13
PKP4-208ENST00000462335 RUSC2Q8N2Y8 1516 aa15.84■□□□□ 0.13
PKP4-208ENST00000462335 CSRNP3Q8WYN3 585 aa15.83■□□□□ 0.12
PKP4-208ENST00000462335 ARHGEF11O15085 1522 aa15.83■□□□□ 0.12
PKP4-208ENST00000462335 JPH4Q96JJ6 628 aa15.82■□□□□ 0.12
PKP4-208ENST00000462335 CLASP1Q7Z460 1538 aa15.82■□□□□ 0.12
PKP4-208ENST00000462335 RIMBP3CA6NJZ7 1639 aa15.82■□□□□ 0.12
PKP4-208ENST00000462335 RIMBP3BA6NNM3 1639 aa15.82■□□□□ 0.12
PKP4-208ENST00000462335 RIMBP3Q9UFD9 1639 aa15.82■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 67.9 ms